Wall clock time and date at job start Tue Mar 31 2020 23:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30835 * 125.89746 * 2 1 4 4 N 1.40090 * 108.20225 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.03629 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92626 * 359.75765 * 4 3 2 7 7 C 1.35316 * 107.74528 * 0.38934 * 6 4 3 8 8 C 1.50698 * 126.04026 * 179.87546 * 7 6 4 9 9 N 1.46900 * 109.47212 * 259.69050 * 8 7 6 10 10 C 1.46901 * 110.99890 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47401 * 34.99821 * 10 9 8 12 12 C 1.53002 * 109.46860 * 274.99873 * 10 9 8 13 13 C 1.53000 * 109.46769 * 155.00113 * 10 9 8 14 14 N 1.46504 * 109.47054 * 304.99530 * 13 10 9 15 15 C 1.46502 * 119.99951 * 270.00335 * 14 13 10 16 16 C 1.34772 * 119.99726 * 90.00258 * 14 13 10 17 17 O 1.21275 * 120.00245 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99951 * 179.97438 * 16 14 13 19 19 S 1.80999 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76196 * 100.00215 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99567 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00210 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46794 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46946 * 119.99737 * 24 22 20 27 27 H 1.48494 * 109.46907 * 239.99913 * 24 22 20 28 28 H 1.08996 * 109.47762 * 270.03064 * 1 2 3 29 29 H 1.09000 * 109.46991 * 30.02784 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.02315 * 1 2 3 31 31 H 1.08999 * 109.47780 * 89.97008 * 5 4 3 32 32 H 1.08996 * 109.47439 * 209.97585 * 5 4 3 33 33 H 1.09003 * 109.47270 * 329.97341 * 5 4 3 34 34 H 1.08002 * 126.12793 * 180.24040 * 6 4 3 35 35 H 1.09002 * 109.47143 * 139.68653 * 8 7 6 36 36 H 1.09005 * 109.47073 * 19.69252 * 8 7 6 37 37 H 1.00898 * 110.99796 * 56.04201 * 9 8 7 38 38 H 1.09002 * 109.47075 * 299.99593 * 12 10 9 39 39 H 1.08996 * 109.47407 * 60.00550 * 12 10 9 40 40 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 41 41 H 1.08991 * 109.47625 * 64.99793 * 13 10 9 42 42 H 1.09002 * 109.46642 * 184.99944 * 13 10 9 43 43 H 1.09002 * 109.46936 * 90.00417 * 15 14 13 44 44 H 1.08999 * 109.46527 * 209.99942 * 15 14 13 45 45 H 1.09001 * 109.47444 * 329.99840 * 15 14 13 46 46 H 1.09001 * 109.47160 * 300.00062 * 18 16 14 47 47 H 1.09004 * 109.47123 * 60.00351 * 18 16 14 48 48 H 0.96997 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1330 0.0006 8 6 1.8598 -2.5657 0.0013 9 7 1.4794 -2.9574 -1.3624 10 6 1.0182 -4.3517 -1.4004 11 1 0.4843 -4.5830 -0.4787 12 6 2.2235 -5.2839 -1.5393 13 6 0.0822 -4.5468 -2.5949 14 7 -1.0093 -3.5722 -2.5242 15 6 -2.2457 -3.9073 -1.8133 16 6 -0.8760 -2.3673 -3.1132 17 8 0.1473 -2.0901 -3.7021 18 6 -1.9990 -1.3649 -3.0411 19 16 -1.5199 0.1423 -3.9212 20 6 -2.9725 1.1107 -3.6830 21 1 -3.8052 0.7070 -3.1261 22 6 -3.0470 2.3919 -4.2117 23 7 -2.0327 2.8832 -4.8916 24 14 -4.5873 3.4182 -3.9597 25 1 -5.5754 2.6418 -3.1685 26 1 -4.2381 4.6642 -3.2310 27 1 -5.1729 3.7643 -5.2797 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 5.0821 1.7159 1.0291 32 1 5.6097 0.9980 -0.5118 33 1 4.5567 2.4331 -0.5129 34 1 4.4891 -1.3486 0.0120 35 1 0.9987 -2.6668 0.6620 36 1 2.6653 -3.2104 0.3532 37 1 2.2422 -2.8115 -2.0066 38 1 2.7574 -5.0526 -2.4610 39 1 2.8903 -5.1449 -0.6883 40 1 1.8813 -6.3184 -1.5679 41 1 0.6392 -4.4020 -3.5204 42 1 -0.3296 -5.5558 -2.5726 43 1 -2.1561 -3.6095 -0.7686 44 1 -3.0823 -3.3795 -2.2711 45 1 -2.4184 -4.9819 -1.8714 46 1 -2.8922 -1.7862 -3.5024 47 1 -2.2068 -1.1265 -1.9980 48 1 -2.0846 3.7787 -5.2608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725483221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:02 Heat of formation + Delta-G solvation = 48.049023 kcal Electronic energy + Delta-G solvation = -28472.592961 eV Core-core repulsion = 24690.926792 eV Total energy + Delta-G solvation = -3781.666169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00020 -39.26382 -36.97112 -34.77956 -33.75753 -32.30932 -31.87556 -29.85032 -29.13444 -28.65595 -27.04645 -25.83035 -25.47692 -24.94865 -23.62245 -20.95660 -20.50336 -19.33297 -18.90962 -17.49573 -16.65069 -16.29333 -15.80690 -15.44640 -15.35030 -14.99353 -14.70282 -14.57158 -14.08448 -13.80240 -13.69135 -13.30321 -13.23687 -12.96129 -12.75559 -12.65166 -12.48238 -12.40181 -12.37862 -12.19118 -12.10069 -11.83437 -11.63089 -11.58062 -11.52803 -11.17860 -10.99469 -10.90590 -10.87736 -10.65146 -10.16933 -9.65822 -8.97610 -8.95822 -8.91575 -8.34374 -8.21317 -8.02847 -7.89029 -6.32403 -6.09953 -3.77404 2.08767 2.71701 3.00740 3.18553 3.28544 3.35445 3.39679 3.51000 3.83643 4.32518 4.42231 4.65428 4.85079 4.88767 5.05298 5.11508 5.12572 5.21230 5.25109 5.25955 5.28427 5.31671 5.40049 5.47700 5.48748 5.60950 5.67555 5.74096 5.77493 5.80007 5.86780 5.88285 5.94812 6.08724 6.10737 6.14194 6.28450 6.30591 6.45853 6.57636 6.93373 7.05105 7.18992 7.30455 7.66420 7.71052 7.91118 8.04997 8.47002 8.99189 9.35724 10.97315 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008738 B = 0.004386 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.674538 B = 6381.780648 C = 8744.890441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.112 3.888 3 N -0.295 5.295 4 N -0.382 5.382 5 C 0.106 3.894 6 C 0.052 3.948 7 C -0.231 4.231 8 C 0.146 3.854 9 N -0.661 5.661 10 C 0.068 3.932 11 H 0.074 0.926 12 C -0.180 4.180 13 C 0.131 3.869 14 N -0.615 5.615 15 C 0.084 3.916 16 C 0.546 3.454 17 O -0.504 6.504 18 C -0.148 4.148 19 S -0.056 6.056 20 C -0.531 4.531 21 H 0.070 0.930 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.913 3.087 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.024 0.976 37 H 0.346 0.654 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 -15.786 12.387 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 N -0.117 5.117 4 N -0.163 5.163 5 C -0.036 4.036 6 C -0.095 4.095 7 C -0.243 4.243 8 C 0.016 3.984 9 N -0.292 5.292 10 C -0.044 4.044 11 H 0.092 0.908 12 C -0.240 4.240 13 C 0.007 3.993 14 N -0.351 5.351 15 C -0.060 4.060 16 C 0.333 3.667 17 O -0.377 6.377 18 C -0.299 4.299 19 S 0.171 5.829 20 C -0.680 4.680 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.740 3.260 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.182 0.818 35 H 0.090 0.910 36 H 0.042 0.958 37 H 0.166 0.834 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.941 -13.567 11.446 20.851 hybrid contribution -1.168 -0.999 1.035 1.853 sum 9.773 -14.565 12.481 21.527 Atomic orbital electron populations 1.20213 0.86409 1.05041 1.01535 1.22220 0.97012 0.89633 0.96654 1.77442 0.85922 1.22753 1.25615 1.48312 1.05793 1.04458 1.57771 1.21753 0.83782 0.95312 1.02721 1.22181 0.98825 0.85228 1.03262 1.19802 0.91518 0.96031 1.16982 1.20040 0.97939 0.89682 0.90731 1.60432 1.42668 1.19473 1.06629 1.21999 0.95097 0.87988 0.99329 0.90783 1.22459 0.99133 1.00414 1.01963 1.21364 0.88425 0.90881 0.98676 1.47550 1.15835 1.15630 1.56078 1.21688 0.86999 1.00587 0.96752 1.19910 0.88123 0.81078 0.77552 1.90636 1.29515 1.76160 1.41362 1.23553 0.99605 1.01460 1.05287 1.85410 1.23802 1.05061 1.68666 1.22920 1.02551 1.02290 1.40225 0.91137 1.24945 0.97013 0.96816 0.94704 1.70033 1.30024 1.16728 1.33557 0.86200 0.81982 0.79812 0.78008 1.19645 1.20666 1.20728 0.91749 0.89910 0.89839 0.91296 0.89932 0.89277 0.81825 0.91037 0.95753 0.83447 0.92221 0.92785 0.92277 0.90197 0.91201 0.93254 0.91069 0.92017 0.90152 0.89742 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.26 36.00 0.37 -0.88 16 2 C 0.11 1.96 7.22 -82.41 -0.59 1.37 16 3 N -0.30 -5.47 12.58 33.67 0.42 -5.05 16 4 N -0.38 -5.54 4.01 -68.17 -0.27 -5.81 16 5 C 0.11 1.02 11.47 59.85 0.69 1.71 16 6 C 0.05 0.67 11.40 -17.22 -0.20 0.47 16 7 C -0.23 -3.36 5.61 -105.05 -0.59 -3.95 16 8 C 0.15 1.74 5.59 -4.98 -0.03 1.72 16 9 N -0.66 -8.60 4.51 -107.99 -0.49 -9.09 16 10 C 0.07 0.69 2.89 -67.71 -0.20 0.50 16 11 H 0.07 0.72 7.80 -51.93 -0.41 0.32 16 12 C -0.18 -1.47 9.16 37.16 0.34 -1.13 16 13 C 0.13 1.51 5.24 -4.04 -0.02 1.49 16 14 N -0.62 -8.58 2.78 -181.57 -0.50 -9.08 16 15 C 0.08 0.89 10.29 59.85 0.62 1.51 16 16 C 0.55 10.34 7.03 -10.99 -0.08 10.26 16 17 O -0.50 -11.28 14.59 5.56 0.08 -11.20 16 18 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 24 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 1.45 7.88 -51.93 -0.41 1.04 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.02 0.25 7.43 -51.93 -0.39 -0.14 16 37 H 0.35 4.96 8.46 -39.29 -0.33 4.63 16 38 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 39 H 0.05 0.42 7.45 -51.93 -0.39 0.04 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 42 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 45 H 0.06 0.50 7.89 -51.93 -0.41 0.09 16 46 H 0.08 1.58 7.40 -51.91 -0.38 1.19 16 47 H 0.08 1.66 8.03 -51.91 -0.42 1.24 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -37.06 410.45 -8.43 -45.49 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.03 Total: 4.29 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 0.68 Total: -2.85 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.11 Total: -55.03 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.06 -8.43 -45.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725483221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.535 kcal (2) G-P(sol) polarization free energy of solvation -37.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds