Wall clock time and date at job start Tue Mar 31 2020 23:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30835 * 125.89746 * 2 1 4 4 N 1.40090 * 108.20225 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.03629 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92626 * 359.75765 * 4 3 2 7 7 C 1.35316 * 107.74528 * 0.38934 * 6 4 3 8 8 C 1.50698 * 126.04026 * 179.87546 * 7 6 4 9 9 N 1.46900 * 109.47212 * 259.69050 * 8 7 6 10 10 C 1.46901 * 110.99890 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47401 * 34.99821 * 10 9 8 12 12 C 1.53002 * 109.46860 * 274.99873 * 10 9 8 13 13 C 1.53000 * 109.46769 * 155.00113 * 10 9 8 14 14 N 1.46504 * 109.47054 * 304.99530 * 13 10 9 15 15 C 1.46502 * 119.99951 * 270.00335 * 14 13 10 16 16 C 1.34772 * 119.99726 * 90.00258 * 14 13 10 17 17 O 1.21275 * 120.00245 * 0.02562 * 16 14 13 18 18 C 1.50702 * 119.99951 * 179.97438 * 16 14 13 19 19 S 1.80999 * 109.47288 * 180.02562 * 18 16 14 20 20 C 1.76196 * 100.00215 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99567 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00210 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46794 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46946 * 119.99737 * 24 22 20 27 27 H 1.48494 * 109.46907 * 239.99913 * 24 22 20 28 28 H 1.08996 * 109.47762 * 270.03064 * 1 2 3 29 29 H 1.09000 * 109.46991 * 30.02784 * 1 2 3 30 30 H 1.09001 * 109.47267 * 150.02315 * 1 2 3 31 31 H 1.08999 * 109.47780 * 89.97008 * 5 4 3 32 32 H 1.08996 * 109.47439 * 209.97585 * 5 4 3 33 33 H 1.09003 * 109.47270 * 329.97341 * 5 4 3 34 34 H 1.08002 * 126.12793 * 180.24040 * 6 4 3 35 35 H 1.09002 * 109.47143 * 139.68653 * 8 7 6 36 36 H 1.09005 * 109.47073 * 19.69252 * 8 7 6 37 37 H 1.00898 * 110.99796 * 56.04201 * 9 8 7 38 38 H 1.09002 * 109.47075 * 299.99593 * 12 10 9 39 39 H 1.08996 * 109.47407 * 60.00550 * 12 10 9 40 40 H 1.09000 * 109.46986 * 180.02562 * 12 10 9 41 41 H 1.08991 * 109.47625 * 64.99793 * 13 10 9 42 42 H 1.09002 * 109.46642 * 184.99944 * 13 10 9 43 43 H 1.09002 * 109.46936 * 90.00417 * 15 14 13 44 44 H 1.08999 * 109.46527 * 209.99942 * 15 14 13 45 45 H 1.09001 * 109.47444 * 329.99840 * 15 14 13 46 46 H 1.09001 * 109.47160 * 300.00062 * 18 16 14 47 47 H 1.09004 * 109.47123 * 60.00351 * 18 16 14 48 48 H 0.96997 * 120.00091 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1330 0.0006 8 6 1.8598 -2.5657 0.0013 9 7 1.4794 -2.9574 -1.3624 10 6 1.0182 -4.3517 -1.4004 11 1 0.4843 -4.5830 -0.4787 12 6 2.2235 -5.2839 -1.5393 13 6 0.0822 -4.5468 -2.5949 14 7 -1.0093 -3.5722 -2.5242 15 6 -2.2457 -3.9073 -1.8133 16 6 -0.8760 -2.3673 -3.1132 17 8 0.1473 -2.0901 -3.7021 18 6 -1.9990 -1.3649 -3.0411 19 16 -1.5199 0.1423 -3.9212 20 6 -2.9725 1.1107 -3.6830 21 1 -3.8052 0.7070 -3.1261 22 6 -3.0470 2.3919 -4.2117 23 7 -2.0327 2.8832 -4.8916 24 14 -4.5873 3.4182 -3.9597 25 1 -5.5754 2.6418 -3.1685 26 1 -4.2381 4.6642 -3.2310 27 1 -5.1729 3.7643 -5.2797 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 5.0821 1.7159 1.0291 32 1 5.6097 0.9980 -0.5118 33 1 4.5567 2.4331 -0.5129 34 1 4.4891 -1.3486 0.0120 35 1 0.9987 -2.6668 0.6620 36 1 2.6653 -3.2104 0.3532 37 1 2.2422 -2.8115 -2.0066 38 1 2.7574 -5.0526 -2.4610 39 1 2.8903 -5.1449 -0.6883 40 1 1.8813 -6.3184 -1.5679 41 1 0.6392 -4.4020 -3.5204 42 1 -0.3296 -5.5558 -2.5726 43 1 -2.1561 -3.6095 -0.7686 44 1 -3.0823 -3.3795 -2.2711 45 1 -2.4184 -4.9819 -1.8714 46 1 -2.8922 -1.7862 -3.5024 47 1 -2.2068 -1.1265 -1.9980 48 1 -2.0846 3.7787 -5.2608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725483221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:01 Heat of formation + Delta-G solvation = 22.105576 kcal Electronic energy + Delta-G solvation = -28473.717954 eV Core-core repulsion = 24690.926792 eV Total energy + Delta-G solvation = -3782.791161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10731 -40.55517 -38.00909 -35.98298 -34.83191 -34.53367 -32.90433 -31.09003 -30.41613 -29.77216 -28.01522 -27.61442 -26.81993 -26.11775 -24.60073 -21.87249 -21.57063 -20.55804 -20.29840 -19.38407 -17.83122 -17.52513 -16.97866 -16.84141 -16.58876 -16.49199 -15.97701 -15.78422 -15.49081 -15.06583 -14.82902 -14.48119 -14.39837 -14.27330 -14.10634 -13.80024 -13.56519 -13.45193 -13.29272 -13.19002 -13.12570 -13.06971 -12.94136 -12.93054 -12.83690 -12.82929 -12.52712 -12.46654 -12.07104 -11.76093 -11.61923 -11.35191 -11.11651 -10.50106 -10.12419 -10.10762 -9.43013 -9.26945 -8.85611 -8.54393 -8.29822 -6.03783 1.01920 1.31648 1.40690 1.50416 1.64761 1.76088 1.82528 2.01450 2.30417 2.45550 3.04111 3.39253 3.52063 3.72535 3.94042 3.99734 4.09193 4.25239 4.29872 4.34237 4.38346 4.42612 4.46786 4.49788 4.52764 4.60044 4.63749 4.66101 4.69887 4.77182 4.82624 4.84980 4.95642 5.04609 5.05699 5.12370 5.15944 5.20658 5.30324 5.37169 5.45822 5.80953 5.88719 6.24271 6.25211 6.44676 6.63007 6.67332 6.87656 7.11897 7.58214 8.79357 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008738 B = 0.004386 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.674538 B = 6381.780648 C = 8744.890441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.084 3.916 3 N -0.352 5.352 4 N -0.385 5.385 5 C 0.096 3.904 6 C 0.063 3.937 7 C -0.247 4.247 8 C 0.156 3.844 9 N -0.683 5.683 10 C 0.072 3.928 11 H 0.088 0.912 12 C -0.170 4.170 13 C 0.127 3.873 14 N -0.602 5.602 15 C 0.075 3.925 16 C 0.546 3.454 17 O -0.547 6.547 18 C -0.122 4.122 19 S -0.141 6.141 20 C -0.541 4.541 21 H 0.078 0.922 22 C 0.014 3.986 23 N -0.913 5.913 24 Si 0.992 3.008 25 H -0.256 1.256 26 H -0.277 1.277 27 H -0.273 1.273 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.210 0.790 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.335 0.665 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.670 -18.587 14.321 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 N -0.176 5.176 4 N -0.167 5.167 5 C -0.044 4.044 6 C -0.084 4.084 7 C -0.259 4.259 8 C 0.026 3.974 9 N -0.314 5.314 10 C -0.039 4.039 11 H 0.106 0.894 12 C -0.229 4.229 13 C 0.003 3.997 14 N -0.336 5.336 15 C -0.067 4.067 16 C 0.333 3.667 17 O -0.424 6.424 18 C -0.273 4.273 19 S 0.086 5.914 20 C -0.689 4.689 21 H 0.096 0.904 22 C -0.190 4.190 23 N -0.550 5.550 24 Si 0.814 3.186 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.199 1.199 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.153 0.847 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.785 -16.422 13.417 23.791 hybrid contribution -1.053 -0.242 0.477 1.181 sum 9.732 -16.664 13.894 23.779 Atomic orbital electron populations 1.20031 0.87193 1.02534 1.02157 1.22391 0.97081 0.91020 0.97717 1.77311 0.88277 1.24313 1.27741 1.48684 1.05356 1.05792 1.56850 1.22120 0.83001 0.94778 1.04483 1.22879 0.99799 0.84893 1.00831 1.20139 0.91755 0.96569 1.17404 1.19991 0.98670 0.88512 0.90207 1.60390 1.42575 1.21496 1.06899 1.21992 0.95709 0.87129 0.99022 0.89408 1.22342 0.98052 1.00773 1.01747 1.21642 0.87946 0.91725 0.98343 1.47496 1.17589 1.14007 1.54484 1.21967 0.84985 1.02989 0.96760 1.19564 0.86814 0.82291 0.78040 1.90622 1.30733 1.77353 1.43707 1.23372 1.00884 0.98554 1.04535 1.85556 1.25484 1.09709 1.70660 1.23229 1.02577 1.02864 1.40186 0.90408 1.26044 1.00687 0.98171 0.94100 1.70202 1.32628 1.17275 1.34871 0.85006 0.77508 0.77736 0.78349 1.17922 1.20223 1.19864 0.89553 0.93999 0.90430 0.89143 0.86559 0.90562 0.77327 0.91183 0.93111 0.84718 0.93320 0.91963 0.90386 0.92700 0.87336 0.92041 0.91786 0.88261 0.88878 0.88776 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.19 10.26 71.24 0.73 -1.46 16 2 C 0.08 3.05 7.22 43.10 0.31 3.36 16 3 N -0.35 -13.67 12.58 -47.39 -0.60 -14.26 16 4 N -0.39 -11.03 4.01 -369.57 -1.48 -12.52 16 5 C 0.10 1.75 11.47 127.77 1.47 3.21 16 6 C 0.06 1.53 11.40 83.54 0.95 2.48 16 7 C -0.25 -7.04 5.61 -20.14 -0.11 -7.15 16 8 C 0.16 3.44 5.59 85.56 0.48 3.92 16 9 N -0.68 -17.05 4.51 -495.56 -2.24 -19.29 16 10 C 0.07 1.29 2.89 44.92 0.13 1.42 16 11 H 0.09 1.36 7.80 -2.39 -0.02 1.34 16 12 C -0.17 -2.24 9.16 71.98 0.66 -1.58 16 13 C 0.13 2.63 5.24 86.38 0.45 3.08 16 14 N -0.60 -15.77 2.78 -846.76 -2.35 -18.12 16 15 C 0.08 1.38 10.29 127.77 1.31 2.69 16 16 C 0.55 20.89 7.03 87.66 0.62 21.50 16 17 O -0.55 -25.47 14.59 -3.02 -0.04 -25.51 16 18 C -0.12 -5.17 4.71 71.24 0.34 -4.83 16 19 S -0.14 -8.16 20.57 -56.49 -1.16 -9.33 16 20 C -0.54 -32.06 9.50 67.95 0.65 -31.41 16 21 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 22 C 0.01 0.85 5.49 84.86 0.47 1.31 16 23 N -0.91 -58.35 13.22 21.65 0.29 -58.06 16 24 Si 0.99 45.54 29.55 68.60 2.03 47.57 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.81 7.88 -2.39 -0.02 2.80 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.07 1.55 8.06 -2.39 -0.02 1.53 16 36 H 0.05 0.85 7.43 -2.38 -0.02 0.83 16 37 H 0.33 9.53 8.46 -89.70 -0.76 8.77 16 38 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 39 H 0.06 0.74 7.45 -2.39 -0.02 0.72 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 1.45 7.42 -2.39 -0.02 1.43 16 42 H 0.11 1.44 7.89 -2.39 -0.02 1.42 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.28 6.44 -2.39 -0.02 1.27 16 45 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 46 H 0.09 3.66 7.40 -2.40 -0.02 3.64 16 47 H 0.09 3.75 8.03 -2.39 -0.02 3.74 16 48 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -87.53 410.45 3.08 -84.45 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.19 Total: 28.52 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 8.44 Total: -3.45 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -6.38 Total: -122.25 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -87.53 3.08 -84.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725483221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.557 kcal (2) G-P(sol) polarization free energy of solvation -87.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds