Wall clock time and date at job start Tue Mar 31 2020 23:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46497 * 126.03962 * 180.25154 * 6 4 3 8 8 C 1.53000 * 109.47116 * 89.99918 * 7 6 4 9 9 N 1.46900 * 109.46941 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99734 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47171 * 324.99797 * 10 9 8 12 12 C 1.52998 * 109.47403 * 85.00329 * 10 9 8 13 13 C 1.53010 * 109.46863 * 205.00119 * 10 9 8 14 14 N 1.46497 * 109.47218 * 54.99728 * 13 10 9 15 15 C 1.34776 * 120.00337 * 180.02562 * 14 13 10 16 16 O 1.21289 * 119.99251 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00377 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47319 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00138 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99657 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00415 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99481 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47129 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46972 * 120.00409 * 23 21 19 26 26 H 1.48501 * 109.47114 * 239.99982 * 23 21 19 27 27 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 28 28 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 29 29 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 30 30 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 31 31 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 35 35 H 1.08997 * 109.46689 * 210.00046 * 7 6 4 36 36 H 1.09002 * 109.46868 * 329.99889 * 7 6 4 37 37 H 1.08998 * 109.47166 * 300.00133 * 8 7 6 38 38 H 1.09002 * 109.47275 * 60.00221 * 8 7 6 39 39 H 1.00902 * 111.00273 * 56.04624 * 9 8 7 40 40 H 1.09000 * 109.46676 * 299.99304 * 12 10 9 41 41 H 1.08998 * 109.47392 * 59.99603 * 12 10 9 42 42 H 1.09004 * 109.46924 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.46816 * 174.99657 * 13 10 9 44 44 H 1.09000 * 109.46724 * 294.99698 * 13 10 9 45 45 H 0.96999 * 119.99891 * 0.02562 * 14 13 10 46 46 H 1.09001 * 109.46960 * 299.99896 * 17 15 14 47 47 H 1.09004 * 109.47221 * 59.99517 * 17 15 14 48 48 H 0.96996 * 120.00157 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7900 -1.5006 0.0073 8 6 5.2006 -1.7957 1.4514 9 7 6.3847 -2.6652 1.4558 10 6 6.8082 -2.9708 2.8288 11 1 6.6282 -2.1048 3.4658 12 6 6.0102 -4.1655 3.3547 13 6 8.3002 -3.3100 2.8387 14 7 9.0542 -2.2141 2.2250 15 6 10.3958 -2.2932 2.1231 16 8 10.9788 -3.2717 2.5399 17 6 11.1714 -1.1657 1.4924 18 16 12.9362 -1.5676 1.5026 19 6 13.5836 -0.1225 0.7298 20 1 12.9166 0.6663 0.4149 21 6 14.9509 0.0019 0.5258 22 7 15.7639 -0.9593 0.9100 23 14 15.6372 1.5337 -0.2942 24 1 14.5236 2.4576 -0.6280 25 1 16.5805 2.2104 0.6318 26 1 16.3531 1.1510 -1.5376 27 7 2.2742 -1.0598 0.0048 28 1 -0.3633 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.9922 2.1598 0.0004 32 1 5.1300 1.8074 -1.0349 33 1 5.6508 1.0934 0.5102 34 1 4.6072 2.5354 0.5030 35 1 4.5566 -2.4354 -0.5023 36 1 5.6096 -1.0003 -0.5085 37 1 5.4339 -0.8609 1.9610 38 1 4.3810 -2.2960 1.9672 39 1 7.1388 -2.2519 0.9279 40 1 4.9473 -3.9239 3.3477 41 1 6.1901 -5.0315 2.7177 42 1 6.3242 -4.3920 4.3737 43 1 8.6342 -3.4497 3.8668 44 1 8.4680 -4.2272 2.2742 45 1 8.5879 -1.4314 1.8920 46 1 10.8371 -1.0252 0.4644 47 1 11.0039 -0.2487 2.0574 48 1 16.7193 -0.8724 0.7671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731582709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:09 Heat of formation + Delta-G solvation = 29.510678 kcal Electronic energy + Delta-G solvation = -26204.032189 eV Core-core repulsion = 22421.562137 eV Total energy + Delta-G solvation = -3782.470052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61172 -39.54486 -37.85618 -35.23654 -33.74147 -32.60001 -32.47059 -31.56617 -29.68956 -29.31472 -27.38481 -26.71703 -25.85030 -25.36369 -22.90234 -21.07433 -20.72318 -20.50141 -19.56033 -17.99019 -17.09954 -16.80219 -16.29682 -16.18222 -15.77189 -15.49830 -14.86153 -14.84613 -14.68665 -14.23205 -14.09782 -13.85847 -13.68546 -13.46675 -13.28044 -13.24122 -12.98301 -12.92625 -12.81542 -12.69629 -12.51826 -12.24903 -12.11581 -11.92912 -11.85956 -11.69281 -11.20151 -11.10699 -11.06552 -10.79826 -10.79350 -9.85408 -9.50407 -9.37507 -9.12504 -9.02173 -8.99786 -8.80403 -8.28375 -6.54910 -6.25994 -3.96942 1.51930 2.07576 2.46055 2.93754 3.00450 3.18214 3.24240 3.28331 3.57424 3.71142 4.09462 4.15873 4.25898 4.34043 4.45379 4.54666 4.64080 4.80960 4.83549 4.98061 4.99207 5.05994 5.06504 5.09357 5.17558 5.25194 5.27009 5.34366 5.40465 5.42506 5.48653 5.51544 5.54995 5.57241 5.62274 5.78325 5.81149 5.88562 5.95808 6.05257 6.37620 6.43361 6.47256 6.70387 6.84777 7.45231 7.52620 7.55757 8.30844 8.50424 9.19444 10.81461 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.002038 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.611089 B =13735.430512 C =15808.800253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.070 3.930 3 C -0.275 4.275 4 C 0.086 3.914 5 C -0.095 4.095 6 N -0.367 5.367 7 C 0.133 3.867 8 C 0.045 3.955 9 N -0.682 5.682 10 C 0.077 3.923 11 H 0.052 0.948 12 C -0.139 4.139 13 C 0.118 3.882 14 N -0.743 5.743 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.279 1.279 27 N -0.294 5.294 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.036 0.964 38 H 0.084 0.916 39 H 0.345 0.655 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.391 0.609 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.196 3.316 0.108 29.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.304 4.304 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.150 5.150 7 C 0.011 3.989 8 C -0.085 4.085 9 N -0.317 5.317 10 C -0.032 4.032 11 H 0.070 0.930 12 C -0.197 4.197 13 C -0.006 4.006 14 N -0.399 5.399 15 C 0.319 3.681 16 O -0.386 6.386 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 N -0.117 5.117 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.165 0.835 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.225 0.775 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.213 -0.350 0.763 28.226 hybrid contribution -0.017 4.239 -0.897 4.333 sum -28.230 3.889 -0.134 28.497 Atomic orbital electron populations 1.20165 0.86748 1.03231 1.02890 1.22335 0.96940 0.90838 0.99478 1.21119 0.90978 0.99759 1.18532 1.21159 0.97419 0.84694 1.00805 1.20498 0.92946 0.98316 1.03625 1.48458 1.05250 1.03927 1.57358 1.21598 0.83941 0.95487 0.97903 1.22350 0.94772 0.95547 0.95866 1.60387 1.08451 1.48478 1.14334 1.21779 0.93866 0.98772 0.88831 0.93017 1.21738 0.99562 0.97626 1.00767 1.21528 0.88587 0.91026 0.99496 1.46048 1.07327 1.22051 1.64483 1.20308 0.81262 0.88176 0.78353 1.90719 1.68620 1.32600 1.46648 1.23533 1.04794 0.99216 1.02920 1.85437 0.90583 1.27757 1.79439 1.22898 0.94948 1.05046 1.45556 0.90885 1.24997 0.95871 0.97321 0.95399 1.70020 1.03944 1.31961 1.44257 0.86115 0.78894 0.81517 0.78956 1.19637 1.20551 1.20527 1.77354 0.86210 1.22600 1.25499 0.90611 0.90495 0.90983 0.83708 0.89928 0.91118 0.89469 0.87607 0.88913 0.94549 0.89787 0.83475 0.92419 0.91318 0.91923 0.90695 0.90397 0.77489 0.89217 0.89301 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.45 36.01 0.38 -0.07 16 2 C 0.07 0.68 7.22 -82.40 -0.59 0.09 16 3 C -0.27 -2.42 10.65 -40.01 -0.43 -2.85 16 4 C 0.09 0.74 6.93 -82.26 -0.57 0.17 16 5 C -0.10 -0.53 9.90 36.01 0.36 -0.18 16 6 N -0.37 -3.53 3.61 -57.14 -0.21 -3.73 16 7 C 0.13 0.99 6.33 -4.04 -0.03 0.97 16 8 C 0.04 0.33 5.81 -3.82 -0.02 0.31 16 9 N -0.68 -5.24 6.30 -106.72 -0.67 -5.91 16 10 C 0.08 0.63 2.81 -67.71 -0.19 0.44 16 11 H 0.05 0.41 7.80 -51.93 -0.41 0.00 16 12 C -0.14 -1.06 9.41 37.16 0.35 -0.71 16 13 C 0.12 1.27 5.31 -4.04 -0.02 1.25 16 14 N -0.74 -8.98 4.99 -60.29 -0.30 -9.28 16 15 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 16 O -0.51 -11.32 15.86 5.55 0.09 -11.23 16 17 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 23 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 N -0.29 -3.37 12.58 33.67 0.42 -2.94 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.35 7.72 -51.93 -0.40 -0.05 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.04 0.26 8.06 -51.93 -0.42 -0.16 16 38 H 0.08 0.74 7.43 -51.93 -0.39 0.35 16 39 H 0.34 2.56 6.71 -39.29 -0.26 2.29 16 40 H 0.06 0.43 7.45 -51.93 -0.39 0.05 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.39 3.55 7.37 -40.82 -0.30 3.25 16 46 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 47 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -35.73 413.90 -9.37 -45.10 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.00 Total: 1.27 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.43 Total: -6.69 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.02 Total: -46.96 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.73 -9.37 -45.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731582709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.612 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds