Wall clock time and date at job start Tue Mar 31 2020 23:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46497 * 126.03962 * 180.25154 * 6 4 3 8 8 C 1.53000 * 109.47116 * 89.99918 * 7 6 4 9 9 N 1.46900 * 109.46941 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99734 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.47171 * 324.99797 * 10 9 8 12 12 C 1.52998 * 109.47403 * 85.00329 * 10 9 8 13 13 C 1.53010 * 109.46863 * 205.00119 * 10 9 8 14 14 N 1.46497 * 109.47218 * 54.99728 * 13 10 9 15 15 C 1.34776 * 120.00337 * 180.02562 * 14 13 10 16 16 O 1.21289 * 119.99251 * 359.97438 * 15 14 13 17 17 C 1.50691 * 120.00377 * 180.02562 * 15 14 13 18 18 S 1.80997 * 109.47319 * 180.02562 * 17 15 14 19 19 C 1.76201 * 100.00138 * 179.97438 * 18 17 15 20 20 H 1.07996 * 119.99824 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99657 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00415 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99481 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47129 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46972 * 120.00409 * 23 21 19 26 26 H 1.48501 * 109.47114 * 239.99982 * 23 21 19 27 27 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 28 28 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 29 29 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 30 30 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 31 31 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 33 33 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 34 34 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 35 35 H 1.08997 * 109.46689 * 210.00046 * 7 6 4 36 36 H 1.09002 * 109.46868 * 329.99889 * 7 6 4 37 37 H 1.08998 * 109.47166 * 300.00133 * 8 7 6 38 38 H 1.09002 * 109.47275 * 60.00221 * 8 7 6 39 39 H 1.00902 * 111.00273 * 56.04624 * 9 8 7 40 40 H 1.09000 * 109.46676 * 299.99304 * 12 10 9 41 41 H 1.08998 * 109.47392 * 59.99603 * 12 10 9 42 42 H 1.09004 * 109.46924 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.46816 * 174.99657 * 13 10 9 44 44 H 1.09000 * 109.46724 * 294.99698 * 13 10 9 45 45 H 0.96999 * 119.99891 * 0.02562 * 14 13 10 46 46 H 1.09001 * 109.46960 * 299.99896 * 17 15 14 47 47 H 1.09004 * 109.47221 * 59.99517 * 17 15 14 48 48 H 0.96996 * 120.00157 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7900 -1.5006 0.0073 8 6 5.2006 -1.7957 1.4514 9 7 6.3847 -2.6652 1.4558 10 6 6.8082 -2.9708 2.8288 11 1 6.6282 -2.1048 3.4658 12 6 6.0102 -4.1655 3.3547 13 6 8.3002 -3.3100 2.8387 14 7 9.0542 -2.2141 2.2250 15 6 10.3958 -2.2932 2.1231 16 8 10.9788 -3.2717 2.5399 17 6 11.1714 -1.1657 1.4924 18 16 12.9362 -1.5676 1.5026 19 6 13.5836 -0.1225 0.7298 20 1 12.9166 0.6663 0.4149 21 6 14.9509 0.0019 0.5258 22 7 15.7639 -0.9593 0.9100 23 14 15.6372 1.5337 -0.2942 24 1 14.5236 2.4576 -0.6280 25 1 16.5805 2.2104 0.6318 26 1 16.3531 1.1510 -1.5376 27 7 2.2742 -1.0598 0.0048 28 1 -0.3633 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.9922 2.1598 0.0004 32 1 5.1300 1.8074 -1.0349 33 1 5.6508 1.0934 0.5102 34 1 4.6072 2.5354 0.5030 35 1 4.5566 -2.4354 -0.5023 36 1 5.6096 -1.0003 -0.5085 37 1 5.4339 -0.8609 1.9610 38 1 4.3810 -2.2960 1.9672 39 1 7.1388 -2.2519 0.9279 40 1 4.9473 -3.9239 3.3477 41 1 6.1901 -5.0315 2.7177 42 1 6.3242 -4.3920 4.3737 43 1 8.6342 -3.4497 3.8668 44 1 8.4680 -4.2272 2.2742 45 1 8.5879 -1.4314 1.8920 46 1 10.8371 -1.0252 0.4644 47 1 11.0039 -0.2487 2.0574 48 1 16.7193 -0.8724 0.7671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731582709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:09 Heat of formation + Delta-G solvation = 3.954230 kcal Electronic energy + Delta-G solvation = -26205.140400 eV Core-core repulsion = 22421.562137 eV Total energy + Delta-G solvation = -3783.578263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24018 -40.79886 -38.75296 -36.04325 -34.68989 -34.57160 -33.26285 -32.26777 -30.90652 -30.05395 -27.92315 -27.75072 -27.34179 -26.55413 -23.52820 -21.85477 -21.79856 -21.34545 -20.19012 -19.84483 -18.06427 -17.71426 -17.47558 -17.02468 -16.87888 -16.69457 -16.36307 -15.87579 -15.86218 -15.36093 -14.85457 -14.67171 -14.55633 -14.38531 -14.14976 -14.11852 -13.93790 -13.78977 -13.61792 -13.28389 -13.24585 -13.15467 -13.14356 -12.91212 -12.83269 -12.66370 -12.63249 -12.51201 -12.37844 -11.91748 -11.69465 -11.44177 -11.15667 -10.99838 -10.25946 -10.20309 -10.02904 -9.62089 -9.43999 -8.66054 -8.34415 -6.12188 0.88196 1.27011 1.41776 1.47158 1.48876 1.58049 1.59213 1.82401 2.21070 2.28062 3.00032 3.00376 3.32131 3.52300 3.62416 3.74594 3.80928 3.92809 3.98967 4.12859 4.16238 4.25183 4.29430 4.32167 4.50862 4.52155 4.57827 4.60729 4.67644 4.70079 4.78393 4.80526 4.82466 4.87868 4.95513 4.97974 5.05055 5.10681 5.26442 5.32985 5.39222 5.42911 5.76382 5.81986 6.12274 6.20494 6.23313 6.40073 6.79752 7.07326 7.19324 8.74935 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.002038 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.611089 B =13735.430512 C =15808.800253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.058 3.942 3 C -0.292 4.292 4 C 0.083 3.917 5 C -0.094 4.094 6 N -0.375 5.375 7 C 0.132 3.868 8 C 0.057 3.943 9 N -0.685 5.685 10 C 0.089 3.911 11 H 0.064 0.936 12 C -0.137 4.137 13 C 0.120 3.880 14 N -0.714 5.714 15 C 0.536 3.464 16 O -0.563 6.563 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.544 4.544 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.338 5.338 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.348 0.652 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.411 0.589 46 H 0.113 0.887 47 H 0.111 0.889 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.670 5.865 -0.450 31.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.320 4.320 4 C -0.045 4.045 5 C -0.152 4.152 6 N -0.158 5.158 7 C 0.011 3.989 8 C -0.073 4.073 9 N -0.320 5.320 10 C -0.021 4.021 11 H 0.082 0.918 12 C -0.195 4.195 13 C -0.004 4.004 14 N -0.369 5.369 15 C 0.322 3.678 16 O -0.441 6.441 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.692 4.692 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.201 1.201 27 N -0.161 5.161 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.169 0.831 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.248 0.752 46 H 0.132 0.868 47 H 0.129 0.871 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.757 2.221 0.199 29.840 hybrid contribution 0.291 3.414 -0.701 3.498 sum -29.466 5.636 -0.502 30.004 Atomic orbital electron populations 1.20268 0.84945 1.03988 1.03690 1.22911 0.98353 0.90865 0.98614 1.21463 0.91195 1.00448 1.18933 1.21711 0.98557 0.84596 0.99621 1.20610 0.91853 0.98265 1.04479 1.48607 1.05056 1.04572 1.57538 1.21670 0.84007 0.95233 0.98038 1.22185 0.93920 0.95455 0.95705 1.60354 1.08663 1.48926 1.14066 1.21672 0.91674 0.99389 0.89349 0.91847 1.21725 0.99628 0.97103 1.01073 1.21596 0.90016 0.90004 0.98781 1.45717 1.05421 1.22969 1.62841 1.20066 0.82761 0.87011 0.77987 1.90712 1.70024 1.34279 1.49076 1.23370 0.99175 1.00501 1.05013 1.85642 0.97728 1.29329 1.79927 1.23241 0.95593 1.05088 1.45279 0.89710 1.26124 0.96282 1.00878 0.95938 1.70186 1.04326 1.34470 1.45834 0.84916 0.78363 0.77096 0.77646 1.17812 1.20100 1.20075 1.77290 0.87397 1.24032 1.27414 0.89709 0.88672 0.91255 0.82004 0.89062 0.90201 0.88252 0.88696 0.86879 0.93685 0.91330 0.83094 0.92117 0.92078 0.91135 0.91144 0.91637 0.75190 0.86848 0.87109 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.45 71.24 0.74 -0.07 16 2 C 0.06 1.09 7.22 43.10 0.31 1.40 16 3 C -0.29 -4.74 10.65 21.99 0.23 -4.51 16 4 C 0.08 1.28 6.93 41.41 0.29 1.56 16 5 C -0.09 -0.78 9.90 71.24 0.71 -0.07 16 6 N -0.37 -6.80 3.61 -334.70 -1.21 -8.01 16 7 C 0.13 1.78 6.33 86.38 0.55 2.33 16 8 C 0.06 0.73 5.81 86.30 0.50 1.23 16 9 N -0.68 -9.06 6.30 -491.56 -3.10 -12.16 16 10 C 0.09 1.25 2.81 44.92 0.13 1.38 16 11 H 0.06 0.80 7.80 -2.39 -0.02 0.78 16 12 C -0.14 -1.90 9.41 71.98 0.68 -1.22 16 13 C 0.12 2.41 5.31 86.38 0.46 2.87 16 14 N -0.71 -15.63 4.99 -463.06 -2.31 -17.94 16 15 C 0.54 18.37 7.85 87.65 0.69 19.06 16 16 O -0.56 -25.15 15.86 -3.06 -0.05 -25.19 16 17 C -0.13 -4.76 6.16 71.23 0.44 -4.33 16 18 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 19 C -0.54 -30.21 9.50 67.95 0.65 -29.56 16 20 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 21 C 0.01 0.70 5.49 84.86 0.47 1.16 16 22 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 23 Si 1.00 42.62 29.55 68.60 2.03 44.65 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 27 N -0.34 -7.68 12.58 -47.38 -0.60 -8.28 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.52 7.72 -2.39 -0.02 0.50 16 34 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.03 7.66 -2.39 -0.02 1.01 16 37 H 0.05 0.51 8.06 -2.39 -0.02 0.49 16 38 H 0.07 1.12 7.43 -2.39 -0.02 1.10 16 39 H 0.35 4.19 6.71 -89.69 -0.60 3.59 16 40 H 0.06 0.83 7.45 -2.39 -0.02 0.81 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.41 5.98 7.37 -92.71 -0.68 5.30 16 46 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 47 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -80.25 413.90 0.40 -79.85 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.33 Total: 20.28 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 6.83 Total: -8.76 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -6.93 Total: -101.38 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.19 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -80.25 0.40 -79.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731582709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.807 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds