Wall clock time and date at job start Tue Mar 31 2020 23:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38828 * 120.41495 * 2 1 4 4 C 1.38775 * 118.50568 * 179.97438 * 3 2 1 5 5 N 1.32123 * 119.16617 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.77123 * 0.02562 * 5 4 3 7 7 C 1.48534 * 119.18964 * 179.97438 * 6 5 4 8 8 O 1.21463 * 120.00199 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00106 * 179.97438 * 9 7 6 11 11 C 1.50690 * 109.47462 * 180.02562 * 10 9 7 12 12 C 1.38238 * 120.00225 * 269.73115 * 11 10 9 13 13 C 1.38234 * 120.00088 * 179.76764 * 12 11 10 14 14 C 1.38233 * 119.99885 * 0.49889 * 13 12 11 15 15 C 1.50707 * 119.99919 * 179.72661 * 14 13 12 16 16 H 1.09000 * 109.47103 * 200.02761 * 15 14 13 17 17 C 1.52998 * 109.46810 * 80.02534 * 15 14 13 18 18 N 1.46494 * 109.46951 * 320.02487 * 15 14 13 19 19 C 1.36939 * 120.00155 * 204.99914 * 18 15 14 20 20 H 1.08005 * 119.99572 * 0.02562 * 19 18 15 21 21 C 1.38805 * 120.00505 * 180.02562 * 19 18 15 22 22 N 1.31619 * 120.00128 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47372 * 119.99706 * 23 21 19 26 26 H 1.48497 * 109.47327 * 239.99940 * 23 21 19 27 27 C 1.38236 * 120.00382 * 359.75361 * 14 13 12 28 28 C 1.38236 * 119.99500 * 359.97438 * 27 14 13 29 29 N 1.32094 * 120.41788 * 179.71821 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99590 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 33 33 H 1.08000 * 120.74407 * 359.95344 * 3 2 1 34 34 H 1.07996 * 120.41743 * 179.97438 * 4 3 2 35 35 H 0.97000 * 120.00171 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.47384 * 300.00497 * 10 9 7 37 37 H 1.09005 * 109.46609 * 59.99804 * 10 9 7 38 38 H 1.08005 * 119.99768 * 359.97438 * 12 11 10 39 39 H 1.07999 * 119.99776 * 180.22981 * 13 12 11 40 40 H 1.08999 * 109.47304 * 60.00254 * 17 15 14 41 41 H 1.09003 * 109.46874 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47473 * 300.00001 * 17 15 14 43 43 H 0.96999 * 120.00227 * 25.00043 * 18 15 14 44 44 H 0.97000 * 120.00458 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.00272 * 179.97438 * 27 14 13 46 46 H 1.08000 * 119.99604 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0235 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2171 -2.4483 0.0021 8 8 3.5886 -3.4877 0.0017 9 7 5.5646 -2.4755 0.0032 10 6 6.2713 -3.7588 0.0043 11 6 7.7581 -3.5135 0.0060 12 6 8.4424 -3.4069 -1.1904 13 6 9.8055 -3.1771 -1.1888 14 6 10.4860 -3.0642 0.0091 15 6 11.9732 -2.8199 0.0107 16 1 12.3876 -3.1076 0.9770 17 6 12.2463 -1.3355 -0.2397 18 7 12.6002 -3.6170 -1.0464 19 6 13.9174 -3.9767 -0.9428 20 1 14.4939 -3.6731 -0.0814 21 6 14.5117 -4.7315 -1.9446 22 7 13.8091 -5.1020 -2.9941 23 14 16.3087 -5.2216 -1.8035 24 1 16.8702 -4.6850 -0.5379 25 1 16.4195 -6.7025 -1.8049 26 1 17.0648 -4.6676 -2.9553 27 6 9.8027 -3.1761 1.2055 28 6 8.4386 -3.4003 1.2039 29 7 2.1759 -1.1391 0.0056 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6889 2.1433 -0.0008 34 1 4.1744 2.0636 0.0001 35 1 6.0665 -1.6455 0.0032 36 1 5.9957 -4.3246 0.8943 37 1 5.9970 -4.3253 -0.8857 38 1 7.9115 -3.4997 -2.1263 39 1 10.3395 -3.0901 -2.1236 40 1 11.7798 -0.7424 0.5469 41 1 13.3219 -1.1586 -0.2381 42 1 11.8319 -1.0477 -1.2059 43 1 12.0823 -3.8900 -1.8198 44 1 14.2244 -5.6292 -3.6944 45 1 10.3345 -3.0884 2.1414 46 1 7.9048 -3.4881 2.1386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733681630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:00 Heat of formation + Delta-G solvation = 49.722504 kcal Electronic energy + Delta-G solvation = -27361.377300 eV Core-core repulsion = 23444.339747 eV Total energy + Delta-G solvation = -3917.037553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69677 -39.79064 -39.01021 -36.01950 -35.15677 -34.44108 -33.14201 -32.32612 -30.71916 -30.39846 -29.10600 -28.35096 -26.74858 -25.03642 -23.84880 -23.62066 -22.57796 -21.69476 -21.04185 -19.73682 -18.49287 -18.18080 -17.42445 -16.40681 -16.14476 -16.07130 -15.75389 -15.38951 -15.17081 -14.71490 -14.65802 -14.27965 -14.03159 -13.71240 -13.54522 -13.38633 -13.32517 -13.07066 -12.99946 -12.88145 -12.47935 -12.30667 -11.93089 -11.73076 -11.52674 -11.23360 -11.11422 -10.91062 -10.86188 -10.62709 -10.39215 -10.26339 -10.10816 -9.97703 -9.80344 -9.68927 -9.28188 -8.98886 -8.62583 -8.32234 -7.00144 -5.79163 -3.07969 -0.00240 0.54475 1.44705 1.70335 2.32539 2.58726 3.42089 3.42236 3.46620 3.47860 3.50106 3.76705 3.92571 4.12743 4.38264 4.47382 4.57743 4.67592 4.76863 4.89214 4.98805 4.99418 5.18851 5.23097 5.31340 5.37623 5.40079 5.55766 5.58410 5.72725 5.78170 5.79035 5.97016 6.02595 6.13662 6.25870 6.31527 6.36035 6.42398 6.50274 6.62279 6.72387 6.77912 6.95091 7.13237 7.16507 7.28916 7.52063 7.68602 7.90006 8.39113 9.50584 10.06250 10.41396 11.43525 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.001786 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.060968 B =15676.348373 C =16048.374883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.172 3.828 3 C -0.211 4.211 4 C 0.150 3.850 5 N -0.498 5.498 6 C 0.291 3.709 7 C 0.581 3.419 8 O -0.506 6.506 9 N -0.700 5.700 10 C 0.167 3.833 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.106 4.106 14 C -0.052 4.052 15 C 0.203 3.797 16 H 0.056 0.944 17 C -0.159 4.159 18 N -0.721 5.721 19 C -0.239 4.239 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.122 4.122 28 C -0.100 4.100 29 N -0.471 5.471 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.121 0.879 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.454 15.035 7.634 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.025 3.975 3 C -0.233 4.233 4 C -0.016 4.016 5 N -0.215 5.215 6 C 0.020 3.980 7 C 0.362 3.638 8 O -0.379 6.379 9 N -0.353 5.353 10 C 0.044 3.956 11 C -0.132 4.132 12 C -0.115 4.115 13 C -0.124 4.124 14 C -0.053 4.053 15 C 0.094 3.906 16 H 0.074 0.926 17 C -0.219 4.219 18 N -0.364 5.364 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.140 4.140 28 C -0.119 4.119 29 N -0.187 5.187 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.172 0.828 34 H 0.195 0.805 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.139 0.861 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.235 13.294 7.687 29.540 hybrid contribution 0.730 0.950 -0.327 1.242 sum -24.505 14.244 7.359 29.284 Atomic orbital electron populations 1.20837 0.87136 1.04470 1.04098 1.21912 0.98051 0.87738 0.89780 1.23046 0.96682 1.00782 1.02835 1.23332 0.92235 0.96042 0.89971 1.68323 1.41588 0.98859 1.12754 1.22904 0.87460 0.92999 0.94592 1.17251 0.82339 0.85961 0.78228 1.90818 1.66873 1.32090 1.48076 1.45952 1.05074 1.10940 1.73299 1.20255 0.87623 0.84414 1.03268 1.19589 0.93899 1.05756 0.93937 1.21023 0.94494 0.98922 0.97066 1.21083 0.93609 0.99055 0.98698 1.20537 0.97049 0.94926 0.92815 1.19256 0.86302 0.91155 0.93931 0.92606 1.22417 1.01591 0.97737 1.00186 1.42531 1.09969 1.62067 1.21805 1.19290 0.86879 1.26873 1.03989 0.91006 1.24742 0.98225 1.00898 0.97028 1.69666 1.35545 1.42387 1.10398 0.86115 0.84884 0.77971 0.77200 1.20530 1.21872 1.21875 1.21009 0.93947 1.01263 0.97810 1.20925 0.94370 0.99623 0.96939 1.68103 1.08585 1.30528 1.11470 0.89284 0.89489 0.89767 0.82818 0.80505 0.74960 0.90363 0.90267 0.86269 0.85356 0.94321 0.92410 0.93313 0.77984 0.93511 0.86103 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.22 36.01 0.37 -0.10 16 2 C 0.17 1.33 6.82 -82.26 -0.56 0.77 16 3 C -0.21 -1.13 9.87 -39.16 -0.39 -1.51 16 4 C 0.15 0.96 11.30 -17.23 -0.19 0.77 16 5 N -0.50 -4.89 9.58 -11.12 -0.11 -5.00 16 6 C 0.29 3.50 7.60 -157.06 -1.19 2.30 16 7 C 0.58 7.78 7.85 -12.01 -0.09 7.69 16 8 O -0.51 -8.32 16.86 5.40 0.09 -8.23 16 9 N -0.70 -8.03 5.54 -62.21 -0.34 -8.37 16 10 C 0.17 1.95 5.80 -5.20 -0.03 1.92 16 11 C -0.13 -1.68 5.25 -104.63 -0.55 -2.23 16 12 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 13 C -0.11 -1.77 9.06 -39.58 -0.36 -2.13 16 14 C -0.05 -0.89 4.95 -104.62 -0.52 -1.41 16 15 C 0.20 4.00 3.09 -69.08 -0.21 3.79 16 16 H 0.06 1.11 7.94 -51.93 -0.41 0.69 16 17 C -0.16 -2.83 9.47 37.16 0.35 -2.47 16 18 N -0.72 -17.79 5.07 -54.55 -0.28 -18.07 16 19 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 23 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.12 -1.78 9.67 -39.58 -0.38 -2.16 16 28 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 29 N -0.47 -5.54 10.07 -7.37 -0.07 -5.62 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.15 8.10 -51.93 -0.42 -0.27 16 33 H 0.15 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.18 0.50 8.06 -52.49 -0.42 0.07 16 35 H 0.41 4.36 7.77 -40.82 -0.32 4.05 16 36 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.13 2.31 6.92 -52.49 -0.36 1.95 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.38 10.01 6.06 -40.82 -0.25 9.76 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 46 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -34.46 396.90 -10.18 -44.64 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.37 Total: 10.01 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -4.78 Total: -5.38 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -0.08 Total: -64.24 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.46 -10.18 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.359 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds