Wall clock time and date at job start Tue Mar 31 2020 23:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38828 * 120.41495 * 2 1 4 4 C 1.38775 * 118.50568 * 179.97438 * 3 2 1 5 5 N 1.32123 * 119.16617 * 359.97438 * 4 3 2 6 6 C 1.32451 * 120.77123 * 0.02562 * 5 4 3 7 7 C 1.48534 * 119.18964 * 179.97438 * 6 5 4 8 8 O 1.21463 * 120.00199 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99782 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00106 * 179.97438 * 9 7 6 11 11 C 1.50690 * 109.47462 * 180.02562 * 10 9 7 12 12 C 1.38238 * 120.00225 * 269.73115 * 11 10 9 13 13 C 1.38234 * 120.00088 * 179.76764 * 12 11 10 14 14 C 1.38233 * 119.99885 * 0.49889 * 13 12 11 15 15 C 1.50707 * 119.99919 * 179.72661 * 14 13 12 16 16 H 1.09000 * 109.47103 * 200.02761 * 15 14 13 17 17 C 1.52998 * 109.46810 * 80.02534 * 15 14 13 18 18 N 1.46494 * 109.46951 * 320.02487 * 15 14 13 19 19 C 1.36939 * 120.00155 * 204.99914 * 18 15 14 20 20 H 1.08005 * 119.99572 * 0.02562 * 19 18 15 21 21 C 1.38805 * 120.00505 * 180.02562 * 19 18 15 22 22 N 1.31619 * 120.00128 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47039 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47372 * 119.99706 * 23 21 19 26 26 H 1.48497 * 109.47327 * 239.99940 * 23 21 19 27 27 C 1.38236 * 120.00382 * 359.75361 * 14 13 12 28 28 C 1.38236 * 119.99500 * 359.97438 * 27 14 13 29 29 N 1.32094 * 120.41788 * 179.71821 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00438 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99590 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00308 * 1 2 3 33 33 H 1.08000 * 120.74407 * 359.95344 * 3 2 1 34 34 H 1.07996 * 120.41743 * 179.97438 * 4 3 2 35 35 H 0.97000 * 120.00171 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.47384 * 300.00497 * 10 9 7 37 37 H 1.09005 * 109.46609 * 59.99804 * 10 9 7 38 38 H 1.08005 * 119.99768 * 359.97438 * 12 11 10 39 39 H 1.07999 * 119.99776 * 180.22981 * 13 12 11 40 40 H 1.08999 * 109.47304 * 60.00254 * 17 15 14 41 41 H 1.09003 * 109.46874 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.47473 * 300.00001 * 17 15 14 43 43 H 0.96999 * 120.00227 * 25.00043 * 18 15 14 44 44 H 0.97000 * 120.00458 * 179.97438 * 22 21 19 45 45 H 1.07998 * 120.00272 * 179.97438 * 27 14 13 46 46 H 1.08000 * 119.99604 * 179.97438 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2099 1.1972 0.0000 4 6 3.5969 1.1510 0.0005 5 7 4.2020 -0.0235 0.0016 6 6 3.5006 -1.1471 0.0015 7 6 4.2171 -2.4483 0.0021 8 8 3.5886 -3.4877 0.0017 9 7 5.5646 -2.4755 0.0032 10 6 6.2713 -3.7588 0.0043 11 6 7.7581 -3.5135 0.0060 12 6 8.4424 -3.4069 -1.1904 13 6 9.8055 -3.1771 -1.1888 14 6 10.4860 -3.0642 0.0091 15 6 11.9732 -2.8199 0.0107 16 1 12.3876 -3.1076 0.9770 17 6 12.2463 -1.3355 -0.2397 18 7 12.6002 -3.6170 -1.0464 19 6 13.9174 -3.9767 -0.9428 20 1 14.4939 -3.6731 -0.0814 21 6 14.5117 -4.7315 -1.9446 22 7 13.8091 -5.1020 -2.9941 23 14 16.3087 -5.2216 -1.8035 24 1 16.8702 -4.6850 -0.5379 25 1 16.4195 -6.7025 -1.8049 26 1 17.0648 -4.6676 -2.9553 27 6 9.8027 -3.1761 1.2055 28 6 8.4386 -3.4003 1.2039 29 7 2.1759 -1.1391 0.0056 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6889 2.1433 -0.0008 34 1 4.1744 2.0636 0.0001 35 1 6.0665 -1.6455 0.0032 36 1 5.9957 -4.3246 0.8943 37 1 5.9970 -4.3253 -0.8857 38 1 7.9115 -3.4997 -2.1263 39 1 10.3395 -3.0901 -2.1236 40 1 11.7798 -0.7424 0.5469 41 1 13.3219 -1.1586 -0.2381 42 1 11.8319 -1.0477 -1.2059 43 1 12.0823 -3.8900 -1.8198 44 1 14.2244 -5.6292 -3.6944 45 1 10.3345 -3.0884 2.1414 46 1 7.9048 -3.4881 2.1386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733681630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:59 Heat of formation + Delta-G solvation = 26.939215 kcal Electronic energy + Delta-G solvation = -27362.365258 eV Core-core repulsion = 23444.339747 eV Total energy + Delta-G solvation = -3918.025510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34518 -40.84949 -40.12395 -37.46179 -36.04901 -35.42957 -34.13017 -33.71317 -31.96723 -31.70253 -30.12809 -29.49469 -27.73578 -26.16725 -25.55165 -24.14719 -23.79629 -22.98313 -21.94553 -21.11306 -19.43564 -19.27710 -18.82869 -17.32044 -17.03182 -16.99634 -16.78295 -16.58226 -16.22870 -15.98373 -15.61919 -15.52904 -15.08705 -14.99235 -14.73766 -14.46049 -14.26696 -14.19057 -13.92185 -13.84098 -13.54244 -13.43473 -13.18704 -12.98253 -12.80925 -12.72653 -12.48086 -12.35622 -12.09414 -12.01506 -11.74836 -11.59986 -11.53838 -11.34715 -11.01052 -10.64384 -10.42930 -10.24451 -9.78629 -9.56202 -9.01838 -7.93792 -5.22140 -0.64759 0.01816 0.28395 0.53834 1.47712 1.48258 1.48537 1.58204 1.72473 2.56236 2.72840 2.78251 2.93333 3.19572 3.40931 3.51126 3.62884 3.83610 3.87428 3.98616 4.02253 4.04622 4.16057 4.29994 4.34151 4.54120 4.57883 4.59990 4.64598 4.71062 4.77510 4.78493 4.79385 5.02249 5.05536 5.06891 5.12637 5.17749 5.22907 5.35816 5.42826 5.51432 5.56212 5.62729 5.84284 5.89038 6.09574 6.24477 6.28643 6.81313 6.99207 7.34720 8.09779 8.33507 9.30023 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025990 B = 0.001786 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.060968 B =15676.348373 C =16048.374883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.151 3.849 3 C -0.185 4.185 4 C 0.140 3.860 5 N -0.509 5.509 6 C 0.262 3.738 7 C 0.580 3.420 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.170 3.830 11 C -0.117 4.117 12 C -0.097 4.097 13 C -0.123 4.123 14 C -0.072 4.072 15 C 0.198 3.802 16 H 0.056 0.944 17 C -0.148 4.148 18 N -0.735 5.735 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.121 4.121 28 C -0.091 4.091 29 N -0.509 5.509 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.200 0.800 34 H 0.216 0.784 35 H 0.419 0.581 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.140 0.860 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.879 17.567 9.479 33.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.206 4.206 4 C -0.025 4.025 5 N -0.227 5.227 6 C -0.008 4.008 7 C 0.362 3.638 8 O -0.424 6.424 9 N -0.341 5.341 10 C 0.048 3.952 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.073 4.073 15 C 0.090 3.910 16 H 0.073 0.927 17 C -0.208 4.208 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.222 1.222 27 C -0.139 4.139 28 C -0.109 4.109 29 N -0.227 5.227 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.217 0.783 34 H 0.233 0.767 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.149 0.851 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.158 0.842 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.658 15.890 9.580 32.480 hybrid contribution 1.001 0.326 -0.838 1.346 sum -25.657 16.215 8.742 31.585 Atomic orbital electron populations 1.20954 0.85011 1.05369 1.04922 1.22582 0.99552 0.87683 0.89668 1.23537 0.96304 1.01638 0.99172 1.24095 0.93396 0.96009 0.88971 1.68293 1.41938 0.99373 1.13117 1.22495 0.87811 0.92924 0.97531 1.17577 0.82554 0.86393 0.77276 1.90776 1.67697 1.33706 1.50251 1.45829 1.04687 1.11014 1.72541 1.20204 0.86705 0.84671 1.03605 1.19677 0.94337 1.04219 0.93525 1.21126 0.93545 0.98516 0.98363 1.20963 0.94654 1.00776 0.97808 1.20345 0.95635 0.97304 0.94031 1.19435 0.87956 0.91366 0.92216 0.92652 1.22248 1.00795 0.96766 1.00975 1.42740 1.09348 1.62721 1.22827 1.19688 0.88158 1.25427 1.03581 0.90378 1.25540 1.02269 1.01986 0.97146 1.69826 1.37135 1.43882 1.11314 0.85089 0.80243 0.77056 0.77488 1.18848 1.22343 1.22201 1.21192 0.94695 1.00556 0.97443 1.21222 0.93759 0.97901 0.98050 1.68034 1.08832 1.33055 1.12743 0.88371 0.90928 0.86513 0.78263 0.76744 0.74286 0.89616 0.90524 0.85108 0.87737 0.91061 0.93853 0.94078 0.79255 0.94148 0.84248 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.22 71.24 0.73 0.04 16 2 C 0.15 2.07 6.82 42.66 0.29 2.36 16 3 C -0.19 -1.30 9.87 22.54 0.22 -1.08 16 4 C 0.14 1.37 11.30 84.78 0.96 2.32 16 5 N -0.51 -9.31 9.58 -189.10 -1.81 -11.12 16 6 C 0.26 6.29 7.60 137.68 1.05 7.33 16 7 C 0.58 15.75 7.85 86.99 0.68 16.44 16 8 O -0.55 -18.67 16.86 -3.60 -0.06 -18.73 16 9 N -0.69 -15.39 5.54 -469.05 -2.60 -17.98 16 10 C 0.17 3.82 5.80 85.63 0.50 4.31 16 11 C -0.12 -2.83 5.25 -19.87 -0.10 -2.94 16 12 C -0.10 -2.72 9.70 22.27 0.22 -2.51 16 13 C -0.12 -4.21 9.06 22.27 0.20 -4.01 16 14 C -0.07 -2.45 4.95 -19.86 -0.10 -2.55 16 15 C 0.20 7.80 3.09 44.25 0.14 7.94 16 16 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 17 C -0.15 -5.19 9.47 71.98 0.68 -4.50 16 18 N -0.74 -37.12 5.07 -326.51 -1.66 -38.78 16 19 C -0.24 -13.12 9.93 84.03 0.83 -12.28 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 22 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 23 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 27 C -0.12 -3.29 9.67 22.27 0.22 -3.07 16 28 C -0.09 -2.12 9.70 22.27 0.22 -1.90 16 29 N -0.51 -11.98 10.07 -177.23 -1.78 -13.76 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.12 -0.03 8.10 -2.39 -0.02 -0.05 16 33 H 0.20 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.42 8.42 7.77 -92.71 -0.72 7.70 16 36 H 0.09 1.84 8.09 -2.38 -0.02 1.82 16 37 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 38 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.10 4.01 6.92 -2.91 -0.02 3.99 16 40 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.37 20.30 6.06 -92.71 -0.56 19.74 16 44 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.14 3.24 8.04 -2.91 -0.02 3.22 16 46 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -78.61 396.90 1.33 -77.28 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: -0.27 Total: 32.41 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 7.19 Total: 1.90 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -7.56 Total: -141.28 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -78.61 1.33 -77.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733681630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.219 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds