Wall clock time and date at job start Tue Mar 31 2020 23:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30841 * 125.89852 * 2 1 4 4 N 1.40088 * 108.20497 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03785 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92646 * 359.75639 * 4 3 2 7 7 C 1.35314 * 107.74262 * 0.39661 * 6 4 3 8 8 C 1.50706 * 126.03956 * 179.87614 * 7 6 4 9 9 N 1.46895 * 109.46632 * 259.68593 * 8 7 6 10 10 C 1.46896 * 110.99852 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47519 * 34.99796 * 10 9 8 12 12 C 1.53002 * 109.47268 * 274.99645 * 10 9 8 13 13 C 1.53004 * 109.47363 * 154.99840 * 10 9 8 14 14 H 1.08995 * 109.47216 * 59.99924 * 13 10 9 15 15 C 1.52999 * 109.47083 * 299.99920 * 13 10 9 16 16 N 1.46498 * 109.47065 * 179.97438 * 13 10 9 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 13 10 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47081 * 120.00118 * 25 23 21 28 28 H 1.48496 * 109.47496 * 240.00528 * 25 23 21 29 29 H 1.08995 * 109.47681 * 270.02375 * 1 2 3 30 30 H 1.09004 * 109.47261 * 30.02430 * 1 2 3 31 31 H 1.09004 * 109.47442 * 150.01876 * 1 2 3 32 32 H 1.08990 * 109.47342 * 89.96838 * 5 4 3 33 33 H 1.08998 * 109.47139 * 209.97331 * 5 4 3 34 34 H 1.09009 * 109.46412 * 329.97061 * 5 4 3 35 35 H 1.07992 * 126.12670 * 180.23989 * 6 4 3 36 36 H 1.08999 * 109.47025 * 139.68166 * 8 7 6 37 37 H 1.08994 * 109.46730 * 19.67946 * 8 7 6 38 38 H 1.00906 * 111.00437 * 56.04161 * 9 8 7 39 39 H 1.08995 * 109.47099 * 299.99946 * 12 10 9 40 40 H 1.09003 * 109.46657 * 59.99626 * 12 10 9 41 41 H 1.08994 * 109.47387 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.47054 * 59.99725 * 15 13 10 43 43 H 1.08996 * 109.47245 * 179.97438 * 15 13 10 44 44 H 1.08995 * 109.47098 * 300.00077 * 15 13 10 45 45 H 0.97001 * 120.00384 * 25.00562 * 16 13 10 46 46 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 47 47 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 48 48 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1330 0.0005 8 6 1.8598 -2.5658 0.0012 9 7 1.4796 -2.9574 -1.3626 10 6 1.0184 -4.3515 -1.4007 11 1 0.4844 -4.5829 -0.4791 12 6 2.2235 -5.2838 -1.5396 13 6 0.0823 -4.5467 -2.5952 14 1 0.6163 -4.3153 -3.5168 15 6 -1.1229 -3.6144 -2.4563 16 7 -0.3771 -5.9372 -2.6335 17 6 -0.7769 -6.4829 -3.7992 18 8 -0.7515 -5.8245 -4.8174 19 6 -1.2554 -7.9115 -3.8376 20 16 -1.7179 -8.3476 -5.5323 21 6 -2.2230 -10.0183 -5.2912 22 1 -2.1828 -10.4578 -4.3055 23 6 -2.6736 -10.7693 -6.3680 24 7 -2.7232 -10.2335 -7.5694 25 14 -3.2085 -12.5408 -6.1126 26 1 -3.0574 -12.9018 -4.6802 27 1 -4.6306 -12.6912 -6.5132 28 1 -2.3633 -13.4375 -6.9413 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.0820 1.7160 1.0291 33 1 5.6097 0.9981 -0.5118 34 1 4.5566 2.4332 -0.5130 35 1 4.4890 -1.3485 0.0120 36 1 0.9987 -2.6668 0.6618 37 1 2.6653 -3.2104 0.3530 38 1 2.2424 -2.8114 -2.0068 39 1 2.7575 -5.0525 -2.4612 40 1 2.8904 -5.1448 -0.6886 41 1 1.8814 -6.3183 -1.5674 42 1 -0.7806 -2.5799 -2.4280 43 1 -1.7894 -3.7531 -3.3075 44 1 -1.6568 -3.8458 -1.5347 45 1 -0.3975 -6.4639 -1.8192 46 1 -0.4571 -8.5713 -3.4979 47 1 -2.1210 -8.0223 -3.1843 48 1 -3.0377 -10.7585 -8.3218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733964800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:49 Heat of formation + Delta-G solvation = 32.553049 kcal Electronic energy + Delta-G solvation = -26460.294728 eV Core-core repulsion = 22677.956603 eV Total energy + Delta-G solvation = -3782.338125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56605 -39.50205 -37.62820 -34.93999 -33.95545 -32.40833 -31.87551 -30.49983 -29.97856 -29.00429 -28.32792 -26.28892 -25.46140 -24.38698 -23.30832 -21.06132 -20.86649 -20.21582 -19.79042 -17.83141 -17.10351 -16.43587 -16.16562 -15.88306 -15.33270 -15.01371 -14.79902 -14.76332 -14.49789 -14.24577 -13.90487 -13.71642 -13.65343 -13.55333 -13.09820 -13.01275 -12.93169 -12.69155 -12.57359 -12.37438 -12.35383 -12.25692 -11.78583 -11.73439 -11.62327 -11.25618 -11.05730 -10.99566 -10.82970 -10.75155 -10.63320 -9.77822 -9.51062 -9.30733 -9.05770 -8.87769 -8.76582 -8.49279 -8.19582 -6.46877 -6.19768 -3.89720 1.54218 2.17024 2.39978 3.07337 3.18512 3.22809 3.29580 3.34246 3.70659 4.08103 4.22441 4.30081 4.41018 4.53219 4.67104 4.70591 4.81367 4.84949 4.94772 5.01679 5.04979 5.15418 5.19418 5.20548 5.39474 5.44817 5.45202 5.51708 5.62053 5.67962 5.70991 5.74681 5.77075 5.81882 5.93332 5.94493 6.04880 6.18100 6.20837 6.40738 6.46916 6.64845 6.71789 6.87356 7.14595 7.44423 7.61866 7.81040 8.37453 8.71456 9.25711 10.87715 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.001680 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.770838 B =16659.940260 C =16850.074601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.098 3.902 3 N -0.303 5.303 4 N -0.379 5.379 5 C 0.103 3.897 6 C 0.059 3.941 7 C -0.233 4.233 8 C 0.142 3.858 9 N -0.673 5.673 10 C 0.079 3.921 11 H 0.081 0.919 12 C -0.183 4.183 13 C 0.155 3.845 14 H 0.085 0.915 15 C -0.152 4.152 16 N -0.734 5.734 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.344 0.656 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.395 0.605 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.478 19.613 20.802 32.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 N -0.126 5.126 4 N -0.160 5.160 5 C -0.038 4.038 6 C -0.088 4.088 7 C -0.245 4.245 8 C 0.012 3.988 9 N -0.304 5.304 10 C -0.031 4.031 11 H 0.100 0.900 12 C -0.242 4.242 13 C 0.050 3.950 14 H 0.103 0.897 15 C -0.210 4.210 16 N -0.389 5.389 17 C 0.319 3.681 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.228 0.772 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.039 22.345 18.950 32.488 hybrid contribution 0.740 -3.518 1.842 4.039 sum 14.779 18.827 20.792 31.705 Atomic orbital electron populations 1.20232 0.86474 1.04062 1.02659 1.22252 0.96993 0.89894 0.97695 1.77355 0.86285 1.22909 1.26036 1.48340 1.05656 1.04651 1.57388 1.21831 0.83648 0.95119 1.03219 1.22338 0.99170 0.85084 1.02183 1.19841 0.91492 0.96084 1.17060 1.20091 0.98884 0.89493 0.90318 1.60438 1.42133 1.20354 1.07515 1.21752 0.95206 0.87422 0.98768 0.90041 1.22493 0.98634 1.01301 1.01742 1.20735 0.94784 0.81122 0.98407 0.89686 1.22039 0.97523 1.00134 1.01322 1.46054 1.68681 1.13481 1.10651 1.20241 0.76409 0.88562 0.82842 1.90701 1.52297 1.62926 1.33178 1.23535 1.03778 0.94875 1.08226 1.85403 1.83819 1.14226 0.99945 1.22919 1.50342 0.97599 0.97453 0.90915 1.24991 0.95091 0.99065 0.94456 1.70029 1.44079 1.36850 0.99329 0.86125 0.78342 0.82709 0.78359 1.19640 1.20576 1.20598 0.90926 0.91166 0.89171 0.90912 0.89537 0.89294 0.81295 0.90282 0.94812 0.83792 0.92177 0.92841 0.91514 0.90612 0.92575 0.93326 0.77196 0.89406 0.89318 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.26 36.00 0.37 -0.22 16 2 C 0.10 0.96 7.22 -82.41 -0.59 0.37 16 3 N -0.30 -3.33 12.58 33.67 0.42 -2.91 16 4 N -0.38 -3.13 4.01 -68.16 -0.27 -3.40 16 5 C 0.10 0.42 11.47 59.85 0.69 1.11 16 6 C 0.06 0.43 11.40 -17.22 -0.20 0.23 16 7 C -0.23 -1.92 5.61 -105.05 -0.59 -2.51 16 8 C 0.14 0.97 5.59 -4.98 -0.03 0.94 16 9 N -0.67 -5.16 5.47 -108.00 -0.59 -5.76 16 10 C 0.08 0.65 2.22 -67.71 -0.15 0.50 16 11 H 0.08 0.61 7.80 -51.93 -0.41 0.20 16 12 C -0.18 -1.46 9.00 37.16 0.33 -1.12 16 13 C 0.15 1.80 2.34 -67.93 -0.16 1.64 16 14 H 0.09 1.21 7.58 -51.93 -0.39 0.81 16 15 C -0.15 -1.78 9.33 37.16 0.35 -1.44 16 16 N -0.73 -9.53 4.39 -53.81 -0.24 -9.77 16 17 C 0.53 9.86 7.81 -10.98 -0.09 9.78 16 18 O -0.52 -11.74 15.53 5.55 0.09 -11.65 16 19 C -0.15 -3.09 6.16 36.01 0.22 -2.86 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 25 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 35 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 36 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 37 H 0.03 0.20 7.43 -51.93 -0.39 -0.18 16 38 H 0.34 2.72 8.46 -39.29 -0.33 2.39 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.05 0.36 7.45 -51.93 -0.39 -0.03 16 41 H 0.07 0.58 7.44 -51.93 -0.39 0.19 16 42 H 0.08 0.83 7.60 -51.93 -0.39 0.43 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.39 3.99 8.39 -40.82 -0.34 3.64 16 46 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 47 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 413.80 15.07 6.24 6.24 Total: -1.00 -36.54 413.80 -8.56 -45.10 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.05 Total: 1.69 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 0.35 Total: -6.59 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.06 Total: -47.36 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.54 -8.56 -45.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733964800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.652 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds