Wall clock time and date at job start Tue Mar 31 2020 23:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30841 * 125.89852 * 2 1 4 4 N 1.40088 * 108.20497 * 179.97438 * 3 2 1 5 5 C 1.46503 * 126.03785 * 180.02562 * 4 3 2 6 6 C 1.34955 * 107.92646 * 359.75639 * 4 3 2 7 7 C 1.35314 * 107.74262 * 0.39661 * 6 4 3 8 8 C 1.50706 * 126.03956 * 179.87614 * 7 6 4 9 9 N 1.46895 * 109.46632 * 259.68593 * 8 7 6 10 10 C 1.46896 * 110.99852 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47519 * 34.99796 * 10 9 8 12 12 C 1.53002 * 109.47268 * 274.99645 * 10 9 8 13 13 C 1.53004 * 109.47363 * 154.99840 * 10 9 8 14 14 H 1.08995 * 109.47216 * 59.99924 * 13 10 9 15 15 C 1.52999 * 109.47083 * 299.99920 * 13 10 9 16 16 N 1.46498 * 109.47065 * 179.97438 * 13 10 9 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 13 10 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47098 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47081 * 120.00118 * 25 23 21 28 28 H 1.48496 * 109.47496 * 240.00528 * 25 23 21 29 29 H 1.08995 * 109.47681 * 270.02375 * 1 2 3 30 30 H 1.09004 * 109.47261 * 30.02430 * 1 2 3 31 31 H 1.09004 * 109.47442 * 150.01876 * 1 2 3 32 32 H 1.08990 * 109.47342 * 89.96838 * 5 4 3 33 33 H 1.08998 * 109.47139 * 209.97331 * 5 4 3 34 34 H 1.09009 * 109.46412 * 329.97061 * 5 4 3 35 35 H 1.07992 * 126.12670 * 180.23989 * 6 4 3 36 36 H 1.08999 * 109.47025 * 139.68166 * 8 7 6 37 37 H 1.08994 * 109.46730 * 19.67946 * 8 7 6 38 38 H 1.00906 * 111.00437 * 56.04161 * 9 8 7 39 39 H 1.08995 * 109.47099 * 299.99946 * 12 10 9 40 40 H 1.09003 * 109.46657 * 59.99626 * 12 10 9 41 41 H 1.08994 * 109.47387 * 179.97438 * 12 10 9 42 42 H 1.09003 * 109.47054 * 59.99725 * 15 13 10 43 43 H 1.08996 * 109.47245 * 179.97438 * 15 13 10 44 44 H 1.08995 * 109.47098 * 300.00077 * 15 13 10 45 45 H 0.97001 * 120.00384 * 25.00562 * 16 13 10 46 46 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 47 47 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 48 48 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0013 6 6 3.6142 -0.7154 0.0064 7 6 2.3271 -1.1330 0.0005 8 6 1.8598 -2.5658 0.0012 9 7 1.4796 -2.9574 -1.3626 10 6 1.0184 -4.3515 -1.4007 11 1 0.4844 -4.5829 -0.4791 12 6 2.2235 -5.2838 -1.5396 13 6 0.0823 -4.5467 -2.5952 14 1 0.6163 -4.3153 -3.5168 15 6 -1.1229 -3.6144 -2.4563 16 7 -0.3771 -5.9372 -2.6335 17 6 -0.7769 -6.4829 -3.7992 18 8 -0.7515 -5.8245 -4.8174 19 6 -1.2554 -7.9115 -3.8376 20 16 -1.7179 -8.3476 -5.5323 21 6 -2.2230 -10.0183 -5.2912 22 1 -2.1828 -10.4578 -4.3055 23 6 -2.6736 -10.7693 -6.3680 24 7 -2.7232 -10.2335 -7.5694 25 14 -3.2085 -12.5408 -6.1126 26 1 -3.0574 -12.9018 -4.6802 27 1 -4.6306 -12.6912 -6.5132 28 1 -2.3633 -13.4375 -6.9413 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.0820 1.7160 1.0291 33 1 5.6097 0.9981 -0.5118 34 1 4.5566 2.4332 -0.5130 35 1 4.4890 -1.3485 0.0120 36 1 0.9987 -2.6668 0.6618 37 1 2.6653 -3.2104 0.3530 38 1 2.2424 -2.8114 -2.0068 39 1 2.7575 -5.0525 -2.4612 40 1 2.8904 -5.1448 -0.6886 41 1 1.8814 -6.3183 -1.5674 42 1 -0.7806 -2.5799 -2.4280 43 1 -1.7894 -3.7531 -3.3075 44 1 -1.6568 -3.8458 -1.5347 45 1 -0.3975 -6.4639 -1.8192 46 1 -0.4571 -8.5713 -3.4979 47 1 -2.1210 -8.0223 -3.1843 48 1 -3.0377 -10.7585 -8.3218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733964800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:48 Heat of formation + Delta-G solvation = 6.129793 kcal Electronic energy + Delta-G solvation = -26461.440526 eV Core-core repulsion = 22677.956603 eV Total energy + Delta-G solvation = -3783.483923 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13505 -40.79825 -38.56727 -35.84385 -34.65672 -34.56420 -32.81340 -31.51205 -30.52370 -29.81113 -29.53514 -27.64064 -26.81582 -24.99629 -24.14283 -21.78626 -21.65879 -21.46537 -20.41837 -19.79301 -17.87191 -17.73494 -17.16446 -16.86586 -16.49933 -16.35730 -16.00179 -15.89484 -15.50470 -15.11002 -14.89651 -14.65486 -14.55807 -14.34506 -14.23712 -14.11266 -13.68764 -13.55390 -13.50917 -13.18728 -13.13442 -13.05091 -12.90228 -12.87423 -12.81458 -12.58150 -12.45266 -12.32955 -12.14233 -11.71206 -11.55590 -11.37509 -11.14362 -10.86246 -10.23942 -10.12835 -10.06388 -9.34718 -9.11656 -8.64238 -8.33144 -6.10781 0.98903 1.29318 1.42460 1.49028 1.59767 1.69668 1.72524 1.78874 2.27931 2.34712 3.01060 3.33635 3.49821 3.72328 3.75516 3.96035 4.06405 4.13234 4.25743 4.30717 4.34146 4.37372 4.43782 4.51841 4.54401 4.58328 4.60821 4.68999 4.70641 4.86628 4.87610 4.92442 4.97533 5.02907 5.16300 5.18667 5.20127 5.27588 5.31830 5.43786 5.47525 5.63901 5.82157 6.16611 6.21726 6.23720 6.52925 6.61340 6.84204 7.08315 7.35139 8.76344 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.001680 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.770838 B =16659.940260 C =16850.074601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.080 3.920 3 N -0.349 5.349 4 N -0.385 5.385 5 C 0.095 3.905 6 C 0.064 3.936 7 C -0.248 4.248 8 C 0.150 3.850 9 N -0.679 5.679 10 C 0.095 3.905 11 H 0.101 0.899 12 C -0.179 4.179 13 C 0.155 3.845 14 H 0.056 0.944 15 C -0.144 4.144 16 N -0.706 5.706 17 C 0.536 3.464 18 O -0.567 6.567 19 C -0.129 4.129 20 S -0.154 6.154 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.256 1.256 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.203 0.797 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.343 0.657 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.020 0.980 44 H 0.066 0.934 45 H 0.414 0.586 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.676 18.370 23.854 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.173 5.173 4 N -0.166 5.166 5 C -0.045 4.045 6 C -0.083 4.083 7 C -0.260 4.260 8 C 0.021 3.979 9 N -0.310 5.310 10 C -0.016 4.016 11 H 0.119 0.881 12 C -0.238 4.238 13 C 0.050 3.950 14 H 0.075 0.925 15 C -0.202 4.202 16 N -0.360 5.360 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.280 4.280 20 S 0.073 5.927 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.821 3.179 26 H -0.180 1.180 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.220 0.780 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.161 0.839 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.039 0.961 44 H 0.085 0.915 45 H 0.251 0.749 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.256 21.125 22.074 34.151 hybrid contribution 0.463 -2.980 0.975 3.169 sum 15.720 18.145 23.049 33.281 Atomic orbital electron populations 1.20229 0.85923 1.03715 1.03208 1.22601 0.97731 0.90464 0.97751 1.77272 0.87930 1.24232 1.27825 1.48681 1.05559 1.05623 1.56754 1.22128 0.83074 0.94942 1.04374 1.22902 1.00029 0.84993 1.00420 1.20043 0.91771 0.96332 1.17823 1.20057 0.99500 0.88909 0.89463 1.60361 1.42453 1.19836 1.08312 1.21562 0.94661 0.87988 0.97400 0.88101 1.22465 0.98625 1.00714 1.02024 1.20846 0.95288 0.79794 0.99093 0.92543 1.21957 0.96954 1.00723 1.00580 1.45765 1.66405 1.14170 1.09647 1.20003 0.76445 0.87807 0.83625 1.90693 1.54757 1.63766 1.35296 1.23377 1.05210 0.96378 1.03059 1.85606 1.84580 1.15294 1.07174 1.23250 1.50325 0.97628 0.98093 0.89875 1.26132 0.94851 1.04262 0.93947 1.70195 1.45200 1.38982 1.00478 0.84903 0.77853 0.76097 0.79068 1.17953 1.20002 1.19960 0.89905 0.91901 0.89017 0.89719 0.86848 0.89765 0.78006 0.90019 0.93180 0.83902 0.93471 0.90782 0.92000 0.89757 0.96093 0.91480 0.74889 0.87239 0.87334 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.26 71.23 0.73 -0.37 16 2 C 0.08 1.53 7.22 43.10 0.31 1.84 16 3 N -0.35 -7.60 12.58 -47.39 -0.60 -8.20 16 4 N -0.38 -5.84 4.01 -369.56 -1.48 -7.32 16 5 C 0.09 0.63 11.47 127.77 1.47 2.10 16 6 C 0.06 0.77 11.40 83.54 0.95 1.72 16 7 C -0.25 -3.62 5.61 -20.14 -0.11 -3.73 16 8 C 0.15 1.61 5.59 85.56 0.48 2.09 16 9 N -0.68 -8.91 5.47 -495.59 -2.71 -11.62 16 10 C 0.09 1.29 2.22 44.92 0.10 1.39 16 11 H 0.10 1.07 7.80 -2.39 -0.02 1.05 16 12 C -0.18 -2.35 9.00 71.98 0.65 -1.71 16 13 C 0.15 3.42 2.34 44.99 0.11 3.53 16 14 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 15 C -0.14 -3.27 9.33 71.98 0.67 -2.59 16 16 N -0.71 -17.17 4.39 -442.53 -1.94 -19.11 16 17 C 0.54 19.66 7.81 87.66 0.68 20.35 16 18 O -0.57 -26.62 15.53 -3.04 -0.05 -26.66 16 19 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 20 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 21 C -0.55 -31.21 9.50 67.96 0.65 -30.56 16 22 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 25 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.09 1.32 7.96 -2.39 -0.02 1.31 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.08 0.86 8.06 -2.39 -0.02 0.84 16 37 H 0.05 0.40 7.43 -2.39 -0.02 0.38 16 38 H 0.34 4.81 8.46 -89.69 -0.76 4.05 16 39 H 0.05 0.75 8.13 -2.39 -0.02 0.74 16 40 H 0.07 0.70 7.45 -2.39 -0.02 0.68 16 41 H 0.06 0.88 7.44 -2.39 -0.02 0.86 16 42 H 0.08 1.77 7.60 -2.39 -0.02 1.76 16 43 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.41 7.04 8.39 -92.71 -0.78 6.26 16 46 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 47 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 48 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 Total: -1.00 -83.40 413.80 1.38 -82.01 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.57 Total: 20.44 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 7.58 Total: -9.41 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -6.45 Total: -102.31 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -83.40 1.38 -82.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733964800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.142 kcal (2) G-P(sol) polarization free energy of solvation -83.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds