Wall clock time and date at job start Tue Mar 31 2020 23:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.89877 * 2 1 4 4 N 1.40091 * 108.20192 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03266 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92639 * 359.75831 * 4 3 2 7 7 C 1.35317 * 107.74326 * 0.39103 * 6 4 3 8 8 C 1.50698 * 126.03423 * 179.87610 * 7 6 4 9 9 N 1.46901 * 109.46930 * 259.68646 * 8 7 6 10 10 C 1.46903 * 110.99943 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47001 * 325.00177 * 10 9 8 12 12 C 1.53007 * 109.47319 * 85.00025 * 10 9 8 13 13 C 1.52995 * 109.47286 * 204.99979 * 10 9 8 14 14 H 1.09002 * 109.46830 * 64.99894 * 13 10 9 15 15 C 1.53000 * 109.47187 * 305.00402 * 13 10 9 16 16 N 1.46496 * 109.47630 * 185.00042 * 13 10 9 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 10 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.08994 * 109.47230 * 270.02839 * 1 2 3 30 30 H 1.09007 * 109.47310 * 30.02009 * 1 2 3 31 31 H 1.09002 * 109.47730 * 150.02167 * 1 2 3 32 32 H 1.08997 * 109.47263 * 89.97464 * 5 4 3 33 33 H 1.09003 * 109.46980 * 209.97542 * 5 4 3 34 34 H 1.09000 * 109.47403 * 329.97225 * 5 4 3 35 35 H 1.07997 * 126.12723 * 180.24332 * 6 4 3 36 36 H 1.09004 * 109.47424 * 139.68952 * 8 7 6 37 37 H 1.08996 * 109.47785 * 19.68676 * 8 7 6 38 38 H 1.00896 * 111.00026 * 303.95642 * 9 8 7 39 39 H 1.09006 * 109.46695 * 59.99669 * 12 10 9 40 40 H 1.08994 * 109.47436 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.46580 * 300.00176 * 12 10 9 42 42 H 1.09006 * 109.47229 * 180.02562 * 15 13 10 43 43 H 1.09002 * 109.46821 * 299.99498 * 15 13 10 44 44 H 1.08992 * 109.47302 * 59.99702 * 15 13 10 45 45 H 0.96999 * 119.99694 * 24.99795 * 16 13 10 46 46 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 47 47 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 48 48 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7155 0.0064 7 6 2.3271 -1.1330 0.0005 8 6 1.8599 -2.5657 0.0012 9 7 1.4795 -2.9574 -1.3625 10 6 1.0172 -4.3512 -1.4004 11 1 1.5864 -4.9425 -0.6831 12 6 -0.4690 -4.4056 -1.0407 13 6 1.2227 -4.9188 -2.8062 14 1 2.2890 -4.9625 -3.0281 15 6 0.5260 -4.0170 -3.8272 16 7 0.6535 -6.2668 -2.8768 17 6 1.1209 -7.1491 -3.7822 18 8 2.0123 -6.8269 -4.5388 19 6 0.5357 -8.5360 -3.8543 20 16 1.3667 -9.4743 -5.1601 21 6 0.5115 -11.0089 -5.0259 22 1 -0.2664 -11.1307 -4.2867 23 6 0.8383 -12.0616 -5.8694 24 7 1.7875 -11.9137 -6.7693 25 14 -0.0679 -13.6888 -5.7265 26 1 -1.2576 -13.6725 -6.6152 27 1 0.8360 -14.7959 -6.1299 28 1 -0.5025 -13.8917 -4.3212 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8899 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.0821 1.7159 1.0291 33 1 5.6097 0.9980 -0.5118 34 1 4.5568 2.4331 -0.5129 35 1 4.4890 -1.3487 0.0120 36 1 0.9987 -2.6668 0.6618 37 1 2.6652 -3.2105 0.3531 38 1 0.7791 -2.3342 -1.7356 39 1 -1.0383 -3.8143 -1.7580 40 1 -0.8120 -5.4399 -1.0683 41 1 -0.6154 -4.0013 -0.0391 42 1 0.6720 -4.4215 -4.8288 43 1 -0.5404 -3.9732 -3.6053 44 1 0.9494 -3.0140 -3.7747 45 1 -0.0596 -6.5244 -2.2719 46 1 0.6769 -9.0402 -2.8982 47 1 -0.5294 -8.4699 -4.0764 48 1 2.0156 -12.6492 -7.3591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733964801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:51 Heat of formation + Delta-G solvation = 35.907963 kcal Electronic energy + Delta-G solvation = -26445.950771 eV Core-core repulsion = 22663.758126 eV Total energy + Delta-G solvation = -3782.192645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58441 -39.58880 -37.73782 -35.03160 -33.90448 -32.40797 -31.92276 -30.52079 -29.85638 -28.89485 -28.33633 -26.40123 -25.47290 -24.73517 -23.77459 -21.17025 -20.59567 -19.85862 -19.68270 -17.87444 -17.08860 -16.41843 -16.15693 -15.86050 -15.61774 -15.13956 -14.79238 -14.78655 -14.68510 -14.25624 -14.02823 -13.89535 -13.65477 -13.40942 -13.26489 -13.04550 -12.76269 -12.59265 -12.54608 -12.47570 -12.37035 -12.28281 -12.24005 -11.87465 -11.71976 -11.05158 -11.00466 -10.99685 -10.82115 -10.75247 -10.70050 -9.78826 -9.53368 -9.30575 -9.04882 -8.86365 -8.82033 -8.48077 -8.20005 -6.46853 -6.19465 -3.89567 1.56383 2.16798 2.35591 3.07512 3.18076 3.23680 3.29396 3.33739 3.71755 4.07630 4.22604 4.25210 4.44683 4.60564 4.64050 4.69720 4.72169 4.90998 4.93727 4.97902 5.02558 5.04238 5.15554 5.16587 5.23651 5.32471 5.38315 5.39739 5.49725 5.60147 5.64358 5.67340 5.72441 5.77499 5.84125 5.91730 5.93451 6.17713 6.20486 6.34334 6.39691 6.66221 6.71700 6.84714 7.15250 7.40387 7.61606 7.80386 8.37328 8.71105 9.25788 10.87930 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.943739 B =16473.209050 C =16936.054137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.080 3.920 3 N -0.300 5.300 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.075 3.925 7 C -0.233 4.233 8 C 0.140 3.860 9 N -0.675 5.675 10 C 0.079 3.921 11 H 0.083 0.917 12 C -0.188 4.188 13 C 0.156 3.844 14 H 0.093 0.907 15 C -0.162 4.162 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.174 0.826 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.343 0.657 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.394 0.606 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 25.467 18.169 31.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 N -0.123 5.123 4 N -0.159 5.159 5 C -0.039 4.039 6 C -0.071 4.071 7 C -0.245 4.245 8 C 0.010 3.990 9 N -0.306 5.306 10 C -0.032 4.032 11 H 0.102 0.898 12 C -0.247 4.247 13 C 0.050 3.950 14 H 0.111 0.889 15 C -0.221 4.221 16 N -0.392 5.392 17 C 0.319 3.681 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.191 0.809 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.229 0.771 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.529 27.148 16.567 31.840 hybrid contribution -2.676 -2.315 1.664 3.910 sum -1.147 24.833 18.230 30.828 Atomic orbital electron populations 1.20174 0.86902 1.03221 1.02893 1.22225 0.96739 0.90428 0.99332 1.77301 0.86485 1.22773 1.25745 1.48350 1.05510 1.04841 1.57248 1.21853 0.83664 0.95081 1.03267 1.22360 0.99362 0.84688 1.00732 1.19795 0.91897 0.95619 1.17188 1.20108 0.99192 0.90481 0.89221 1.60500 1.46519 1.02287 1.21334 1.21739 0.94154 0.90292 0.97029 0.89832 1.22584 0.97593 1.02810 1.01735 1.20731 0.99576 0.81186 0.93490 0.88934 1.22175 0.99903 0.99971 1.00008 1.46192 1.40970 1.13089 1.38918 1.20268 0.82251 0.86035 0.79596 1.90699 1.29359 1.78621 1.40338 1.23540 1.04471 0.95668 1.06771 1.85399 1.49039 1.08767 1.40122 1.22876 1.23965 0.98332 1.23210 0.90967 1.24988 0.95215 0.98837 0.94541 1.70016 1.28491 1.32593 1.19186 0.86178 0.79252 0.81594 0.78523 1.20290 1.20766 1.19725 0.90567 0.90762 0.90793 0.90859 0.89327 0.89329 0.80858 0.94435 0.90451 0.83762 0.91662 0.91788 0.92411 0.92023 0.93004 0.91265 0.77075 0.89349 0.89357 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.26 36.01 0.37 -0.10 16 2 C 0.08 0.73 7.22 -82.41 -0.59 0.14 16 3 N -0.30 -3.21 12.58 33.67 0.42 -2.79 16 4 N -0.38 -3.22 4.01 -68.16 -0.27 -3.50 16 5 C 0.10 0.46 11.47 59.85 0.69 1.14 16 6 C 0.08 0.60 11.40 -17.22 -0.20 0.40 16 7 C -0.23 -1.99 5.61 -105.06 -0.59 -2.58 16 8 C 0.14 1.03 5.59 -4.98 -0.03 1.00 16 9 N -0.67 -5.48 5.60 -107.99 -0.60 -6.08 16 10 C 0.08 0.67 2.64 -67.71 -0.18 0.49 16 11 H 0.08 0.73 7.80 -51.93 -0.40 0.33 16 12 C -0.19 -1.28 8.68 37.16 0.32 -0.96 16 13 C 0.16 1.85 2.63 -67.94 -0.18 1.67 16 14 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 15 C -0.16 -1.87 8.86 37.16 0.33 -1.54 16 16 N -0.74 -9.75 4.99 -53.81 -0.27 -10.02 16 17 C 0.53 9.96 7.81 -10.98 -0.09 9.87 16 18 O -0.52 -11.80 15.53 5.56 0.09 -11.71 16 19 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 25 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.38 7.25 -51.93 -0.38 0.01 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.04 0.25 7.44 -51.93 -0.39 -0.14 16 37 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 38 H 0.34 2.66 6.96 -39.29 -0.27 2.39 16 39 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 40 H 0.06 0.43 6.29 -51.93 -0.33 0.10 16 41 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 44 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 45 H 0.39 4.11 6.58 -40.82 -0.27 3.85 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -36.76 405.64 -8.38 -45.14 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.64 Total: 2.17 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.28 Total: -6.37 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.01 Total: -47.93 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.76 -8.38 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733964801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.051 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds