Wall clock time and date at job start Tue Mar 31 2020 23:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.89877 * 2 1 4 4 N 1.40091 * 108.20192 * 179.97438 * 3 2 1 5 5 C 1.46502 * 126.03266 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92639 * 359.75831 * 4 3 2 7 7 C 1.35317 * 107.74326 * 0.39103 * 6 4 3 8 8 C 1.50698 * 126.03423 * 179.87610 * 7 6 4 9 9 N 1.46901 * 109.46930 * 259.68646 * 8 7 6 10 10 C 1.46903 * 110.99943 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47001 * 325.00177 * 10 9 8 12 12 C 1.53007 * 109.47319 * 85.00025 * 10 9 8 13 13 C 1.52995 * 109.47286 * 204.99979 * 10 9 8 14 14 H 1.09002 * 109.46830 * 64.99894 * 13 10 9 15 15 C 1.53000 * 109.47187 * 305.00402 * 13 10 9 16 16 N 1.46496 * 109.47630 * 185.00042 * 13 10 9 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 10 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.08994 * 109.47230 * 270.02839 * 1 2 3 30 30 H 1.09007 * 109.47310 * 30.02009 * 1 2 3 31 31 H 1.09002 * 109.47730 * 150.02167 * 1 2 3 32 32 H 1.08997 * 109.47263 * 89.97464 * 5 4 3 33 33 H 1.09003 * 109.46980 * 209.97542 * 5 4 3 34 34 H 1.09000 * 109.47403 * 329.97225 * 5 4 3 35 35 H 1.07997 * 126.12723 * 180.24332 * 6 4 3 36 36 H 1.09004 * 109.47424 * 139.68952 * 8 7 6 37 37 H 1.08996 * 109.47785 * 19.68676 * 8 7 6 38 38 H 1.00896 * 111.00026 * 303.95642 * 9 8 7 39 39 H 1.09006 * 109.46695 * 59.99669 * 12 10 9 40 40 H 1.08994 * 109.47436 * 180.02562 * 12 10 9 41 41 H 1.08998 * 109.46580 * 300.00176 * 12 10 9 42 42 H 1.09006 * 109.47229 * 180.02562 * 15 13 10 43 43 H 1.09002 * 109.46821 * 299.99498 * 15 13 10 44 44 H 1.08992 * 109.47302 * 59.99702 * 15 13 10 45 45 H 0.96999 * 119.99694 * 24.99795 * 16 13 10 46 46 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 47 47 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 48 48 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 0.0006 5 6 4.7899 1.5007 0.0013 6 6 3.6142 -0.7155 0.0064 7 6 2.3271 -1.1330 0.0005 8 6 1.8599 -2.5657 0.0012 9 7 1.4795 -2.9574 -1.3625 10 6 1.0172 -4.3512 -1.4004 11 1 1.5864 -4.9425 -0.6831 12 6 -0.4690 -4.4056 -1.0407 13 6 1.2227 -4.9188 -2.8062 14 1 2.2890 -4.9625 -3.0281 15 6 0.5260 -4.0170 -3.8272 16 7 0.6535 -6.2668 -2.8768 17 6 1.1209 -7.1491 -3.7822 18 8 2.0123 -6.8269 -4.5388 19 6 0.5357 -8.5360 -3.8543 20 16 1.3667 -9.4743 -5.1601 21 6 0.5115 -11.0089 -5.0259 22 1 -0.2664 -11.1307 -4.2867 23 6 0.8383 -12.0616 -5.8694 24 7 1.7875 -11.9137 -6.7693 25 14 -0.0679 -13.6888 -5.7265 26 1 -1.2576 -13.6725 -6.6152 27 1 0.8360 -14.7959 -6.1299 28 1 -0.5025 -13.8917 -4.3212 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8899 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 5.0821 1.7159 1.0291 33 1 5.6097 0.9980 -0.5118 34 1 4.5568 2.4331 -0.5129 35 1 4.4890 -1.3487 0.0120 36 1 0.9987 -2.6668 0.6618 37 1 2.6652 -3.2105 0.3531 38 1 0.7791 -2.3342 -1.7356 39 1 -1.0383 -3.8143 -1.7580 40 1 -0.8120 -5.4399 -1.0683 41 1 -0.6154 -4.0013 -0.0391 42 1 0.6720 -4.4215 -4.8288 43 1 -0.5404 -3.9732 -3.6053 44 1 0.9494 -3.0140 -3.7747 45 1 -0.0596 -6.5244 -2.2719 46 1 0.6769 -9.0402 -2.8982 47 1 -0.5294 -8.4699 -4.0764 48 1 2.0156 -12.6492 -7.3591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733964801.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:50 Heat of formation + Delta-G solvation = 9.168900 kcal Electronic energy + Delta-G solvation = -26447.110263 eV Core-core repulsion = 22663.758126 eV Total energy + Delta-G solvation = -3783.352138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16695 -40.86452 -38.72908 -35.91488 -34.62881 -34.56126 -32.88484 -31.43130 -30.48204 -29.68374 -29.48661 -27.64302 -26.92723 -25.48216 -24.46129 -21.94098 -21.70589 -20.70685 -20.42713 -19.81448 -18.01696 -17.60548 -17.06385 -16.86323 -16.67117 -16.38770 -16.26517 -15.91843 -15.52943 -15.44383 -14.94151 -14.79193 -14.49962 -14.31563 -14.14640 -14.06942 -13.83907 -13.52335 -13.25935 -13.16767 -13.13354 -13.03913 -12.95167 -12.88548 -12.85718 -12.84146 -12.63600 -12.50105 -11.81508 -11.74111 -11.66242 -11.34121 -11.12720 -10.87345 -10.24687 -10.15016 -10.06099 -9.44758 -9.09591 -8.64475 -8.32880 -6.10764 0.97369 1.28946 1.43689 1.48730 1.58855 1.67656 1.69863 1.75861 2.27991 2.33733 3.01158 3.33731 3.47849 3.66440 3.84360 3.93945 3.94382 4.07087 4.22859 4.29636 4.33615 4.41117 4.43106 4.46945 4.47680 4.52771 4.53825 4.65514 4.68430 4.79704 4.80550 4.82632 4.96828 5.01270 5.05587 5.11617 5.15434 5.26818 5.27861 5.43491 5.49190 5.60219 5.78361 6.13920 6.19211 6.21525 6.55182 6.58536 6.80134 7.08324 7.33036 8.76319 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028980 B = 0.001699 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.943739 B =16473.209050 C =16936.054137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.069 3.931 3 N -0.342 5.342 4 N -0.385 5.385 5 C 0.095 3.905 6 C 0.070 3.930 7 C -0.247 4.247 8 C 0.147 3.853 9 N -0.683 5.683 10 C 0.092 3.908 11 H 0.085 0.915 12 C -0.185 4.185 13 C 0.155 3.845 14 H 0.060 0.940 15 C -0.154 4.154 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.566 6.566 19 C -0.129 4.129 20 S -0.153 6.153 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.197 0.803 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.346 0.654 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.413 0.587 46 H 0.110 0.890 47 H 0.109 0.891 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 25.279 20.441 32.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 N -0.166 5.166 4 N -0.166 5.166 5 C -0.045 4.045 6 C -0.078 4.078 7 C -0.259 4.259 8 C 0.018 3.982 9 N -0.315 5.315 10 C -0.019 4.019 11 H 0.103 0.897 12 C -0.244 4.244 13 C 0.050 3.950 14 H 0.078 0.922 15 C -0.213 4.213 16 N -0.363 5.363 17 C 0.320 3.680 18 O -0.444 6.444 19 C -0.281 4.281 20 S 0.074 5.926 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.214 0.786 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.166 0.834 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.251 0.749 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.341 27.005 18.893 32.959 hybrid contribution -2.058 -2.098 1.022 3.111 sum -2.399 24.907 19.915 31.980 Atomic orbital electron populations 1.20259 0.85382 1.03766 1.03671 1.22685 0.97926 0.90378 0.98709 1.77231 0.87796 1.24116 1.27442 1.48677 1.05642 1.05513 1.56774 1.22131 0.83074 0.94925 1.04412 1.22838 1.00210 0.84870 0.99854 1.20004 0.92123 0.96007 1.17779 1.20064 0.99656 0.89782 0.88717 1.60405 1.46857 1.02026 1.22229 1.21538 0.95783 0.90400 0.94202 0.89681 1.22562 0.95704 1.03307 1.02814 1.20824 0.97656 0.80332 0.96191 0.92205 1.22096 1.01334 1.00080 0.97759 1.45924 1.40415 1.12782 1.37212 1.20053 0.81788 0.86128 0.80067 1.90691 1.31696 1.79330 1.42662 1.23383 1.04516 0.95609 1.04570 1.85602 1.51589 1.10885 1.44484 1.23216 1.24097 0.98504 1.23585 0.89863 1.26133 0.95993 1.03187 0.93874 1.70185 1.30356 1.33999 1.20278 0.84951 0.77795 0.75931 0.79275 1.19333 1.20355 1.18132 0.89598 0.91015 0.89409 0.89632 0.87178 0.89487 0.78641 0.93221 0.90311 0.83391 0.91210 0.91382 0.90794 0.95530 0.90812 0.90169 0.74864 0.87213 0.87289 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.26 71.24 0.73 -0.08 16 2 C 0.07 1.21 7.22 43.10 0.31 1.52 16 3 N -0.34 -7.23 12.58 -47.39 -0.60 -7.82 16 4 N -0.38 -6.27 4.01 -369.56 -1.48 -7.76 16 5 C 0.09 0.75 11.47 127.77 1.47 2.22 16 6 C 0.07 1.02 11.40 83.54 0.95 1.98 16 7 C -0.25 -3.87 5.61 -20.15 -0.11 -3.99 16 8 C 0.15 1.83 5.59 85.56 0.48 2.31 16 9 N -0.68 -9.65 5.60 -495.56 -2.77 -12.42 16 10 C 0.09 1.33 2.64 44.92 0.12 1.45 16 11 H 0.09 1.26 7.80 -2.39 -0.02 1.24 16 12 C -0.19 -1.82 8.68 71.98 0.62 -1.20 16 13 C 0.16 3.52 2.63 44.99 0.12 3.64 16 14 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 15 C -0.15 -3.41 8.86 71.98 0.64 -2.77 16 16 N -0.71 -17.59 4.99 -442.54 -2.21 -19.80 16 17 C 0.53 19.80 7.81 87.66 0.68 20.49 16 18 O -0.57 -26.70 15.53 -3.03 -0.05 -26.74 16 19 C -0.13 -5.12 6.16 71.24 0.44 -4.69 16 20 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 21 C -0.55 -31.26 9.50 67.96 0.65 -30.61 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 25 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.09 0.70 7.25 -2.39 -0.02 0.69 16 32 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.20 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.05 0.51 7.44 -2.38 -0.02 0.49 16 37 H 0.08 0.96 8.05 -2.39 -0.02 0.94 16 38 H 0.35 4.54 6.96 -89.70 -0.62 3.92 16 39 H 0.07 0.66 6.55 -2.38 -0.02 0.64 16 40 H 0.07 0.63 6.29 -2.39 -0.02 0.62 16 41 H 0.07 0.55 7.45 -2.39 -0.02 0.54 16 42 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 1.29 6.57 -2.39 -0.02 1.28 16 44 H 0.08 1.59 7.13 -2.39 -0.02 1.58 16 45 H 0.41 7.32 6.58 -92.71 -0.61 6.71 16 46 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 47 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -83.27 405.64 1.35 -81.92 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.26 Total: 21.27 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 7.56 Total: -8.54 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -6.77 Total: -103.82 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.27 1.35 -81.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733964801.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.088 kcal (2) G-P(sol) polarization free energy of solvation -83.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds