Wall clock time and date at job start Tue Mar 31 2020 23:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35313 * 126.12881 * 2 1 4 4 C 1.39873 * 107.92230 * 180.02562 * 3 2 1 5 5 C 1.50693 * 125.89991 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47174 * 95.02387 * 5 4 3 7 7 C 1.46904 * 110.99989 * 293.95040 * 6 5 4 8 8 C 1.46903 * 110.99864 * 170.00316 * 6 5 4 9 9 C 1.52999 * 109.46984 * 283.82980 * 8 6 5 10 10 H 1.09002 * 109.47016 * 64.18001 * 9 8 6 11 11 C 1.52999 * 109.47604 * 184.17864 * 9 8 6 12 12 N 1.46501 * 109.47276 * 304.18632 * 9 8 6 13 13 C 1.34775 * 120.00160 * 151.60132 * 12 9 8 14 14 O 1.21281 * 120.00002 * 0.02562 * 13 12 9 15 15 C 1.50703 * 120.00013 * 179.97438 * 13 12 9 16 16 S 1.80996 * 109.47175 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00150 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00198 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46878 * 60.00128 * 21 19 17 23 23 H 1.48498 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47143 * 300.00296 * 21 19 17 25 25 N 1.30844 * 108.20078 * 0.02562 * 4 3 2 26 26 N 1.34949 * 126.12703 * 179.97438 * 2 1 3 27 27 C 1.46507 * 126.03457 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46832 * 269.99786 * 1 2 3 29 29 H 1.08997 * 109.47429 * 30.00124 * 1 2 3 30 30 H 1.09000 * 109.47102 * 150.00768 * 1 2 3 31 31 H 1.07996 * 126.03957 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47433 * 215.02487 * 5 4 3 33 33 H 1.09000 * 109.47156 * 335.02436 * 5 4 3 34 34 H 1.09003 * 109.46722 * 65.23359 * 7 6 5 35 35 H 1.08996 * 109.47041 * 185.23165 * 7 6 5 36 36 H 1.08999 * 109.47336 * 305.23772 * 7 6 5 37 37 H 1.08990 * 109.47458 * 43.83238 * 8 6 5 38 38 H 1.09007 * 109.47257 * 163.83605 * 8 6 5 39 39 H 1.09001 * 109.46305 * 60.00096 * 11 9 8 40 40 H 1.08990 * 109.47434 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.47024 * 300.00685 * 11 9 8 42 42 H 0.97002 * 119.99655 * 331.59431 * 12 9 8 43 43 H 1.08989 * 109.47506 * 300.00668 * 15 13 12 44 44 H 1.09004 * 109.46440 * 60.00135 * 15 13 12 45 45 H 0.96994 * 119.99953 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.47298 * 269.99455 * 27 26 2 47 47 H 1.08998 * 109.46956 * 30.00258 * 27 26 2 48 48 H 1.09002 * 109.46635 * 149.99832 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0013 6 7 5.3228 1.7284 1.3780 7 6 4.3431 2.4868 2.1675 8 6 6.6379 2.3825 1.4023 9 6 7.7192 1.3676 1.0260 10 1 7.5661 1.0378 -0.0016 11 6 9.0974 2.0201 1.1521 12 7 7.6408 0.2141 1.9257 13 6 8.0399 -1.0009 1.5002 14 8 8.4644 -1.1392 0.3726 15 6 7.9597 -2.1873 2.4260 16 16 8.5628 -3.6631 1.5691 17 6 8.3617 -4.8614 2.8450 18 1 7.9644 -4.5666 3.8050 19 6 8.7129 -6.1847 2.6161 20 7 9.1966 -6.5441 1.4458 21 14 8.4990 -7.4552 3.9686 22 1 7.0680 -7.5262 4.3591 23 1 8.9445 -8.7831 3.4752 24 1 9.3149 -7.0661 5.1468 25 7 3.6334 -0.6525 -0.0015 26 7 2.3026 -1.0900 0.0005 27 6 1.8538 -2.4846 0.0006 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 1.9741 2.1210 -0.0004 32 1 5.6418 1.0706 -0.5915 33 1 4.6023 2.5070 -0.4353 34 1 3.4282 1.9031 2.2688 35 1 4.7541 2.6927 3.1558 36 1 4.1201 3.4272 1.6635 37 1 6.6477 3.2055 0.6879 38 1 6.8338 2.7677 2.4031 39 1 9.2504 2.3498 2.1797 40 1 9.8676 1.2972 0.8836 41 1 9.1557 2.8783 0.4827 42 1 7.3017 0.3249 2.8278 43 1 8.5732 -2.0024 3.3076 44 1 6.9243 -2.3416 2.7298 45 1 9.4417 -7.4688 1.2857 46 1 1.7422 -2.8304 1.0282 47 1 0.8956 -2.5579 -0.5136 48 1 2.5900 -3.1032 -0.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754302976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:20 Heat of formation + Delta-G solvation = 43.447731 kcal Electronic energy + Delta-G solvation = -27498.698918 eV Core-core repulsion = 23716.833222 eV Total energy + Delta-G solvation = -3781.865696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32353 -39.29017 -37.68743 -34.87700 -33.42474 -32.33873 -32.10045 -31.21867 -28.74089 -28.32609 -27.40465 -26.99300 -25.56123 -25.38274 -22.78808 -21.14527 -20.44124 -20.03919 -19.20756 -17.72034 -16.67876 -16.27098 -16.23752 -15.72154 -15.49485 -15.02708 -14.73041 -14.62228 -14.53366 -14.18632 -13.90183 -13.64680 -13.41468 -13.16198 -13.01499 -12.85291 -12.70483 -12.60114 -12.51654 -12.40152 -12.31155 -12.11534 -11.92936 -11.74018 -11.71873 -11.33715 -10.97923 -10.94956 -10.75702 -10.68524 -10.39730 -9.71645 -9.16458 -9.12555 -8.97474 -8.59639 -8.55082 -8.40890 -8.09566 -6.36612 -6.12551 -3.80848 1.84046 2.47308 2.64856 3.20099 3.28357 3.32555 3.38435 3.42918 3.84205 4.00033 4.29851 4.39329 4.44925 4.71884 4.78905 4.86714 4.98553 5.06979 5.13619 5.18917 5.21329 5.21929 5.27736 5.34820 5.38027 5.44436 5.44777 5.50025 5.53067 5.56614 5.60038 5.69911 5.74791 5.80159 5.84614 6.09434 6.10938 6.16524 6.26240 6.34168 6.59366 6.81222 6.89542 6.98980 7.02306 7.68039 7.79938 8.04889 8.44232 8.92361 9.32409 10.94864 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.003332 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.213585 B = 8401.649201 C =10814.609708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.074 3.926 3 C -0.272 4.272 4 C 0.079 3.921 5 C 0.136 3.864 6 N -0.530 5.530 7 C 0.027 3.973 8 C 0.047 3.953 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.715 5.715 13 C 0.537 3.463 14 O -0.525 6.525 15 C -0.150 4.150 16 S -0.060 6.060 17 C -0.533 4.533 18 H 0.070 0.930 19 C 0.073 3.927 20 N -0.869 5.869 21 Si 0.917 3.083 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.274 1.274 25 N -0.258 5.258 26 N -0.371 5.371 27 C 0.098 3.902 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.397 0.603 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.852 20.977 -0.299 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.302 4.302 4 C -0.088 4.088 5 C 0.007 3.993 6 N -0.254 5.254 7 C -0.121 4.121 8 C -0.081 4.081 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.368 5.368 13 C 0.324 3.676 14 O -0.400 6.400 15 C -0.300 4.300 16 S 0.167 5.833 17 C -0.682 4.682 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.743 3.257 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.200 1.200 25 N -0.080 5.080 26 N -0.154 5.154 27 C -0.043 4.043 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.230 0.770 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.367 18.914 -2.095 24.460 hybrid contribution -1.510 0.795 2.324 2.883 sum -16.878 19.709 0.230 25.949 Atomic orbital electron populations 1.20417 0.87647 1.03586 1.03149 1.21042 0.94499 0.87522 1.02210 1.21024 0.91775 0.98578 1.18799 1.21938 0.94696 0.91704 1.00450 1.20391 0.93137 0.95807 0.89982 1.61788 1.02258 1.49533 1.11805 1.22420 0.96512 0.95793 0.97397 1.22492 0.88570 0.95044 1.01992 1.20826 0.93208 0.85832 0.95970 0.89509 1.22169 0.97482 1.00847 1.01658 1.45725 1.67074 1.07335 1.16691 1.20142 0.76268 0.83293 0.87946 1.90670 1.44863 1.84537 1.19974 1.23488 1.05111 0.99242 1.02207 1.85338 1.82888 0.95518 1.19569 1.22853 1.49584 0.95236 1.00483 0.91146 1.24971 0.94711 0.97641 0.96257 1.70017 1.40521 1.18195 1.21704 0.86261 0.78641 0.79672 0.81128 1.20034 1.20866 1.19985 1.77630 0.95458 1.12293 1.22614 1.48559 1.03971 1.06037 1.56801 1.21875 1.00874 0.77943 1.03614 0.90363 0.89880 0.91250 0.84182 0.89055 0.92907 0.91106 0.91605 0.95697 0.93182 0.90152 0.92589 0.91497 0.92101 0.76951 0.89698 0.89455 0.92269 0.90580 0.89821 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.12 36.01 0.36 -0.20 16 2 C 0.07 0.80 6.93 -82.26 -0.57 0.23 16 3 C -0.27 -3.07 9.82 -40.01 -0.39 -3.46 16 4 C 0.08 1.09 5.93 -82.40 -0.49 0.60 16 5 C 0.14 1.61 5.35 -4.98 -0.03 1.58 16 6 N -0.53 -5.80 4.42 -244.37 -1.08 -6.88 16 7 C 0.03 0.24 9.24 60.07 0.55 0.79 16 8 C 0.05 0.44 4.58 -3.82 -0.02 0.43 16 9 C 0.15 1.85 2.65 -67.93 -0.18 1.67 16 10 H 0.09 1.31 6.27 -51.93 -0.33 0.99 16 11 C -0.16 -1.81 9.51 37.16 0.35 -1.46 16 12 N -0.72 -10.70 4.79 -53.80 -0.26 -10.95 16 13 C 0.54 10.92 7.84 -10.98 -0.09 10.83 16 14 O -0.53 -12.67 15.47 5.56 0.09 -12.59 16 15 C -0.15 -3.30 6.16 36.01 0.22 -3.08 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.80 9.50 30.94 0.29 -15.50 16 18 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 20 N -0.87 -26.92 13.22 55.49 0.73 -26.18 16 21 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 N -0.26 -4.26 12.58 33.67 0.42 -3.84 16 26 N -0.37 -4.88 4.01 -63.88 -0.26 -5.13 16 27 C 0.10 0.97 11.27 59.85 0.67 1.64 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 7.08 -51.93 -0.37 -0.01 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.09 1.25 6.72 -51.93 -0.35 0.90 16 33 H 0.05 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.07 0.72 6.87 -51.93 -0.36 0.37 16 35 H 0.07 0.51 7.85 -51.93 -0.41 0.11 16 36 H 0.02 0.19 8.07 -51.93 -0.42 -0.23 16 37 H 0.05 0.40 7.99 -51.93 -0.42 -0.02 16 38 H 0.08 0.64 7.74 -51.93 -0.40 0.23 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.40 5.11 8.64 -40.82 -0.35 4.76 16 43 H 0.08 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.09 1.87 8.14 -51.91 -0.42 1.44 16 45 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.54 7.05 -51.93 -0.37 0.17 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -38.28 410.13 -8.75 -47.03 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.95 Total: 3.17 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 0.61 Total: -3.86 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.44 Total: -52.99 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -38.28 -8.75 -47.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754302976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.479 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds