Wall clock time and date at job start Tue Mar 31 2020 23:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35313 * 126.12881 * 2 1 4 4 C 1.39873 * 107.92230 * 180.02562 * 3 2 1 5 5 C 1.50693 * 125.89991 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47174 * 95.02387 * 5 4 3 7 7 C 1.46904 * 110.99989 * 293.95040 * 6 5 4 8 8 C 1.46903 * 110.99864 * 170.00316 * 6 5 4 9 9 C 1.52999 * 109.46984 * 283.82980 * 8 6 5 10 10 H 1.09002 * 109.47016 * 64.18001 * 9 8 6 11 11 C 1.52999 * 109.47604 * 184.17864 * 9 8 6 12 12 N 1.46501 * 109.47276 * 304.18632 * 9 8 6 13 13 C 1.34775 * 120.00160 * 151.60132 * 12 9 8 14 14 O 1.21281 * 120.00002 * 0.02562 * 13 12 9 15 15 C 1.50703 * 120.00013 * 179.97438 * 13 12 9 16 16 S 1.80996 * 109.47175 * 179.97438 * 15 13 12 17 17 C 1.76196 * 100.00150 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00000 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00198 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46878 * 60.00128 * 21 19 17 23 23 H 1.48498 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47143 * 300.00296 * 21 19 17 25 25 N 1.30844 * 108.20078 * 0.02562 * 4 3 2 26 26 N 1.34949 * 126.12703 * 179.97438 * 2 1 3 27 27 C 1.46507 * 126.03457 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.46832 * 269.99786 * 1 2 3 29 29 H 1.08997 * 109.47429 * 30.00124 * 1 2 3 30 30 H 1.09000 * 109.47102 * 150.00768 * 1 2 3 31 31 H 1.07996 * 126.03957 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47433 * 215.02487 * 5 4 3 33 33 H 1.09000 * 109.47156 * 335.02436 * 5 4 3 34 34 H 1.09003 * 109.46722 * 65.23359 * 7 6 5 35 35 H 1.08996 * 109.47041 * 185.23165 * 7 6 5 36 36 H 1.08999 * 109.47336 * 305.23772 * 7 6 5 37 37 H 1.08990 * 109.47458 * 43.83238 * 8 6 5 38 38 H 1.09007 * 109.47257 * 163.83605 * 8 6 5 39 39 H 1.09001 * 109.46305 * 60.00096 * 11 9 8 40 40 H 1.08990 * 109.47434 * 180.02562 * 11 9 8 41 41 H 1.09000 * 109.47024 * 300.00685 * 11 9 8 42 42 H 0.97002 * 119.99655 * 331.59431 * 12 9 8 43 43 H 1.08989 * 109.47506 * 300.00668 * 15 13 12 44 44 H 1.09004 * 109.46440 * 60.00135 * 15 13 12 45 45 H 0.96994 * 119.99953 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.47298 * 269.99455 * 27 26 2 47 47 H 1.08998 * 109.46956 * 30.00258 * 27 26 2 48 48 H 1.09002 * 109.46635 * 149.99832 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0013 6 7 5.3228 1.7284 1.3780 7 6 4.3431 2.4868 2.1675 8 6 6.6379 2.3825 1.4023 9 6 7.7192 1.3676 1.0260 10 1 7.5661 1.0378 -0.0016 11 6 9.0974 2.0201 1.1521 12 7 7.6408 0.2141 1.9257 13 6 8.0399 -1.0009 1.5002 14 8 8.4644 -1.1392 0.3726 15 6 7.9597 -2.1873 2.4260 16 16 8.5628 -3.6631 1.5691 17 6 8.3617 -4.8614 2.8450 18 1 7.9644 -4.5666 3.8050 19 6 8.7129 -6.1847 2.6161 20 7 9.1966 -6.5441 1.4458 21 14 8.4990 -7.4552 3.9686 22 1 7.0680 -7.5262 4.3591 23 1 8.9445 -8.7831 3.4752 24 1 9.3149 -7.0661 5.1468 25 7 3.6334 -0.6525 -0.0015 26 7 2.3026 -1.0900 0.0005 27 6 1.8538 -2.4846 0.0006 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 1.9741 2.1210 -0.0004 32 1 5.6418 1.0706 -0.5915 33 1 4.6023 2.5070 -0.4353 34 1 3.4282 1.9031 2.2688 35 1 4.7541 2.6927 3.1558 36 1 4.1201 3.4272 1.6635 37 1 6.6477 3.2055 0.6879 38 1 6.8338 2.7677 2.4031 39 1 9.2504 2.3498 2.1797 40 1 9.8676 1.2972 0.8836 41 1 9.1557 2.8783 0.4827 42 1 7.3017 0.3249 2.8278 43 1 8.5732 -2.0024 3.3076 44 1 6.9243 -2.3416 2.7298 45 1 9.4417 -7.4688 1.2857 46 1 1.7422 -2.8304 1.0282 47 1 0.8956 -2.5579 -0.5136 48 1 2.5900 -3.1032 -0.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754302976.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:19 Heat of formation + Delta-G solvation = 14.617412 kcal Electronic energy + Delta-G solvation = -27499.949094 eV Core-core repulsion = 23716.833222 eV Total energy + Delta-G solvation = -3783.115872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21089 -40.70518 -38.74390 -36.07542 -34.59215 -34.33991 -32.84532 -32.59078 -29.98580 -29.52323 -28.17128 -27.72865 -27.65955 -26.39816 -23.70912 -22.27787 -21.51116 -21.21947 -20.09895 -19.82427 -17.87603 -17.48258 -17.38722 -16.88858 -16.74490 -16.44767 -16.12597 -16.07977 -15.66898 -15.51464 -14.91259 -14.62378 -14.57777 -14.43321 -14.03952 -13.96148 -13.86212 -13.55959 -13.34388 -13.27275 -13.17651 -13.13686 -13.09084 -12.90993 -12.87286 -12.76510 -12.59954 -12.53552 -12.30783 -11.76477 -11.66813 -11.32315 -11.13608 -10.83016 -10.27679 -10.10069 -9.94350 -9.42227 -9.20047 -8.65906 -8.34551 -6.12537 0.96829 1.26950 1.42425 1.46030 1.57227 1.65977 1.74794 1.78206 2.27022 2.42372 2.98643 3.07735 3.34939 3.57165 3.74612 3.86665 4.04257 4.07302 4.16361 4.24284 4.30875 4.32811 4.33436 4.42535 4.49612 4.50464 4.61056 4.63201 4.66910 4.72898 4.76113 4.80303 4.80970 4.83412 4.90098 5.06895 5.11191 5.12942 5.31852 5.33136 5.39878 5.65641 5.72041 6.06073 6.17023 6.18964 6.21429 6.66300 6.88116 7.05612 7.40138 8.74741 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008855 B = 0.003332 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.213585 B = 8401.649201 C =10814.609708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.078 3.922 3 C -0.282 4.282 4 C 0.073 3.927 5 C 0.139 3.861 6 N -0.550 5.550 7 C 0.033 3.967 8 C 0.057 3.943 9 C 0.144 3.856 10 H 0.054 0.946 11 C -0.155 4.155 12 N -0.690 5.690 13 C 0.537 3.463 14 O -0.572 6.572 15 C -0.125 4.125 16 S -0.148 6.148 17 C -0.549 4.549 18 H 0.079 0.921 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.263 1.263 23 H -0.276 1.276 24 H -0.261 1.261 25 N -0.334 5.334 26 N -0.384 5.384 27 C 0.092 3.908 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.165 0.835 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.087 0.913 42 H 0.411 0.589 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.271 0.729 46 H 0.079 0.921 47 H 0.121 0.879 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.062 23.207 2.032 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.311 4.311 4 C -0.093 4.093 5 C 0.010 3.990 6 N -0.275 5.275 7 C -0.115 4.115 8 C -0.071 4.071 9 C 0.039 3.961 10 H 0.072 0.928 11 C -0.214 4.214 12 N -0.342 5.342 13 C 0.322 3.678 14 O -0.451 6.451 15 C -0.276 4.276 16 S 0.079 5.921 17 C -0.696 4.696 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.185 1.185 25 N -0.157 5.157 26 N -0.167 5.167 27 C -0.048 4.048 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.101 0.899 31 H 0.183 0.817 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.105 0.895 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.139 0.861 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.598 21.204 0.269 27.557 hybrid contribution -0.891 0.223 1.570 1.819 sum -18.489 21.427 1.839 28.361 Atomic orbital electron populations 1.20580 0.84208 1.05195 1.04440 1.21827 0.96500 0.86618 0.99968 1.21341 0.90732 0.99990 1.19034 1.22333 0.96314 0.91227 0.99464 1.20360 0.91745 0.96332 0.90558 1.61694 1.03388 1.51041 1.11414 1.22383 0.95311 0.95904 0.97893 1.22454 0.86481 0.94027 1.04092 1.21059 0.95784 0.85494 0.93804 0.92757 1.22094 0.95018 1.00610 1.03656 1.45536 1.64782 1.06312 1.17577 1.19889 0.76519 0.84414 0.86952 1.90655 1.47443 1.85329 1.21693 1.23313 1.05249 0.96796 1.02262 1.85515 1.83977 0.99888 1.22712 1.23169 1.50116 0.95828 1.00530 0.90301 1.26148 0.93777 1.00048 0.99128 1.70187 1.41415 1.18935 1.24249 0.84999 0.79245 0.76214 0.77485 1.18744 1.20071 1.18549 1.77530 0.98103 1.14183 1.25855 1.48792 1.03411 1.07410 1.57111 1.22066 1.01881 0.76737 1.04129 0.89031 0.88003 0.89918 0.81713 0.92142 0.90366 0.92768 0.90143 0.93755 0.90757 0.87484 0.90373 0.94971 0.89467 0.75315 0.87626 0.88792 0.91962 0.90212 0.86082 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.12 71.24 0.72 -0.12 16 2 C 0.08 1.60 6.93 41.40 0.29 1.88 16 3 C -0.28 -6.02 9.82 21.99 0.22 -5.80 16 4 C 0.07 2.02 5.93 43.10 0.26 2.28 16 5 C 0.14 3.27 5.35 85.56 0.46 3.73 16 6 N -0.55 -11.19 4.42 -927.06 -4.10 -15.29 16 7 C 0.03 0.49 9.24 127.69 1.18 1.67 16 8 C 0.06 0.92 4.58 86.30 0.39 1.31 16 9 C 0.14 3.52 2.65 44.99 0.12 3.64 16 10 H 0.05 1.73 6.27 -2.39 -0.01 1.71 16 11 C -0.16 -3.24 9.51 71.98 0.68 -2.55 16 12 N -0.69 -20.46 4.79 -442.53 -2.12 -22.58 16 13 C 0.54 22.57 7.84 87.66 0.69 23.25 16 14 O -0.57 -29.32 15.47 -3.03 -0.05 -29.36 16 15 C -0.12 -5.63 6.16 71.24 0.44 -5.19 16 16 S -0.15 -8.85 20.57 -56.49 -1.16 -10.01 16 17 C -0.55 -33.16 9.50 67.96 0.65 -32.51 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -58.05 13.22 21.65 0.29 -57.76 16 21 Si 1.00 45.20 29.55 68.60 2.03 47.23 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 25 N -0.33 -11.60 12.58 -47.38 -0.60 -12.20 16 26 N -0.38 -10.27 4.01 -356.02 -1.43 -11.69 16 27 C 0.09 1.85 11.27 127.77 1.44 3.30 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.60 7.08 -2.39 -0.02 0.59 16 31 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.06 1.77 6.72 -2.39 -0.02 1.76 16 33 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.05 1.01 6.87 -2.39 -0.02 0.99 16 35 H 0.08 0.96 7.85 -2.39 -0.02 0.95 16 36 H 0.04 0.50 8.07 -2.39 -0.02 0.48 16 37 H 0.07 0.90 7.99 -2.39 -0.02 0.88 16 38 H 0.11 1.21 7.74 -2.38 -0.02 1.19 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.41 9.94 8.64 -92.71 -0.80 9.14 16 43 H 0.11 4.28 8.14 -2.40 -0.02 4.26 16 44 H 0.09 4.09 8.14 -2.39 -0.02 4.07 16 45 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.12 1.40 7.05 -2.39 -0.02 1.38 16 48 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -90.01 410.13 1.01 -89.00 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.15 Total: 26.52 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 7.99 Total: -3.84 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -7.96 Total: -119.53 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -90.01 1.01 -89.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754302976.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.620 kcal (2) G-P(sol) polarization free energy of solvation -90.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds