Wall clock time and date at job start Wed Apr 1 2020 00:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47541 * 2 1 4 4 C 1.53003 * 109.46652 * 302.27802 * 3 2 1 5 5 C 1.53000 * 109.47343 * 295.05508 * 4 3 2 6 6 C 1.53003 * 109.47183 * 62.27349 * 3 2 1 7 7 N 1.46504 * 109.46572 * 65.00716 * 6 3 2 8 8 C 1.46498 * 119.99636 * 269.99137 * 7 6 3 9 9 C 1.50700 * 109.47647 * 270.00693 * 8 7 6 10 10 H 1.07997 * 119.99439 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99900 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00250 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47062 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47228 * 119.99362 * 13 11 9 16 16 H 1.48495 * 109.47185 * 239.99650 * 13 11 9 17 17 C 1.34765 * 120.00168 * 90.00363 * 7 6 3 18 18 O 1.21284 * 120.00130 * 359.97438 * 17 7 6 19 19 C 1.50704 * 120.00332 * 179.97438 * 17 7 6 20 20 S 1.80991 * 109.47652 * 179.97438 * 19 17 7 21 21 C 1.76193 * 100.00309 * 179.97438 * 20 19 17 22 22 N 1.31651 * 126.08723 * 0.02594 * 21 20 19 23 23 C 1.33338 * 109.69535 * 179.97438 * 22 21 20 24 24 C 1.50699 * 125.43531 * 179.97438 * 23 22 21 25 25 N 1.30592 * 109.13874 * 0.02562 * 23 22 21 26 26 N 1.35076 * 126.08938 * 179.97438 * 21 20 19 27 27 H 0.97000 * 126.83351 * 0.05164 * 26 21 20 28 28 H 1.08996 * 109.47473 * 186.20579 * 1 2 3 29 29 H 1.09004 * 109.47279 * 306.21197 * 1 2 3 30 30 H 1.09004 * 109.47142 * 66.20407 * 1 2 3 31 31 H 1.09001 * 109.46921 * 239.99165 * 2 1 3 32 32 H 1.09002 * 109.46533 * 119.99988 * 2 1 3 33 33 H 1.08996 * 109.47442 * 182.28293 * 3 2 1 34 34 H 1.08997 * 109.47046 * 55.05587 * 4 3 2 35 35 H 1.09003 * 109.47023 * 175.05590 * 4 3 2 36 36 H 1.08995 * 109.46972 * 65.39582 * 5 4 3 37 37 H 1.08996 * 109.47378 * 185.40223 * 5 4 3 38 38 H 1.09003 * 109.47184 * 305.39863 * 5 4 3 39 39 H 1.08995 * 109.47187 * 305.00612 * 6 3 2 40 40 H 1.09004 * 109.46698 * 185.00171 * 6 3 2 41 41 H 1.09006 * 109.47017 * 30.00699 * 8 7 6 42 42 H 1.09003 * 109.46811 * 150.00204 * 8 7 6 43 43 H 0.97000 * 119.99801 * 180.02562 * 12 11 9 44 44 H 1.09001 * 109.46682 * 59.99405 * 19 17 7 45 45 H 1.09000 * 109.47161 * 299.99989 * 19 17 7 46 46 H 1.08997 * 109.47606 * 89.99214 * 24 23 22 47 47 H 1.08998 * 109.47329 * 210.00037 * 24 23 22 48 48 H 1.09004 * 109.46470 * 330.00090 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4838 2.1800 -1.2196 5 6 2.0454 1.5508 -2.4962 6 6 1.5774 2.1470 1.2769 7 7 2.2058 1.5138 2.4390 8 6 1.5428 0.3929 3.1100 9 6 0.6444 0.9196 4.1993 10 1 0.5746 1.9829 4.3745 11 6 -0.0875 0.0438 4.9727 12 7 -0.0020 -1.2511 4.7597 13 14 -1.2006 0.6967 6.3235 14 1 -1.1185 2.1790 6.3593 15 1 -2.6014 0.2845 6.0529 16 1 -0.7664 0.1456 7.6322 17 6 3.3934 1.9626 2.8909 18 8 3.9423 2.8905 2.3352 19 6 4.0396 1.3117 4.0866 20 16 5.6127 2.1323 4.4439 21 6 6.1341 1.1983 5.8440 22 7 5.4803 0.1977 6.3958 23 6 6.1715 -0.2722 7.4347 24 6 5.7487 -1.4162 8.3200 25 7 7.2728 0.4176 7.5635 26 7 7.2762 1.3809 6.5417 27 1 7.9617 2.0457 6.3714 28 1 -0.3634 -1.0216 0.1111 29 1 -0.3634 0.6071 0.8292 30 1 -0.3633 0.4147 -0.9403 31 1 1.8933 -0.5140 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 3.1293 1.4427 -0.0409 34 1 0.3965 2.1043 -1.2252 35 1 1.7747 3.2295 -1.1735 36 1 1.6758 0.5298 -2.5909 37 1 1.7264 2.1343 -3.3597 38 1 3.1343 1.5399 -2.4473 39 1 0.4936 2.0692 1.3624 40 1 1.8643 3.1979 1.2363 41 1 0.9479 -0.1637 2.3858 42 1 2.2944 -0.2657 3.5455 43 1 -0.5173 -1.8672 5.3036 44 1 4.2199 0.2580 3.8734 45 1 3.3793 1.3998 4.9494 46 1 6.1315 -2.3518 7.9124 47 1 6.1482 -1.2663 9.3230 48 1 4.6604 -1.4578 8.3647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081354921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:11 Heat of formation + Delta-G solvation = 28.714045 kcal Electronic energy + Delta-G solvation = -28042.104079 eV Core-core repulsion = 24259.599483 eV Total energy + Delta-G solvation = -3782.504597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85699 -39.50230 -37.20946 -34.65979 -33.23186 -32.53502 -31.73476 -30.92579 -30.04098 -28.28670 -28.16433 -26.65607 -24.07924 -23.27996 -22.91280 -22.83414 -20.48635 -19.31250 -18.73424 -18.02168 -16.79993 -16.42719 -16.38797 -15.74415 -15.66422 -15.04988 -14.99274 -14.47289 -14.35962 -13.85836 -13.53877 -13.51585 -13.02394 -12.92412 -12.77730 -12.55117 -12.42473 -12.33860 -12.11540 -11.97596 -11.78519 -11.52042 -11.35158 -11.19712 -11.03599 -10.88408 -10.80115 -10.55544 -10.26952 -10.20270 -10.18410 -10.06981 -10.00294 -9.97758 -9.92442 -9.70259 -9.30801 -8.57002 -7.83470 -7.65395 -6.20727 -4.28072 1.06692 1.50341 2.10662 2.86913 2.89979 3.15381 3.20837 3.30214 3.34127 3.82738 4.31659 4.47326 4.69412 5.01387 5.11519 5.13478 5.21048 5.22853 5.49040 5.53524 5.57449 5.62008 5.64354 5.68687 5.81676 5.89846 5.96239 6.00028 6.02882 6.09845 6.14037 6.15228 6.19962 6.33823 6.39853 6.48615 6.51661 6.59190 6.62263 6.77028 6.87321 6.88338 7.14905 7.42683 7.72999 8.01206 8.03432 8.16997 8.67390 8.84511 9.40099 10.85867 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008522 B = 0.004140 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3284.957860 B = 6761.128425 C = 9081.306856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.100 4.100 4 C -0.119 4.119 5 C -0.149 4.149 6 C 0.123 3.877 7 N -0.580 5.580 8 C 0.226 3.774 9 C -0.541 4.541 10 H 0.061 0.939 11 C 0.070 3.930 12 N -0.886 5.886 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.124 4.124 20 S 0.062 5.938 21 C 0.253 3.747 22 N -0.530 5.530 23 C 0.235 3.765 24 C -0.060 4.060 25 N -0.320 5.320 26 N -0.470 5.470 27 H 0.441 0.559 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.651 1.946 -4.030 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.120 4.120 4 C -0.157 4.157 5 C -0.206 4.206 6 C -0.001 4.001 7 N -0.309 5.309 8 C 0.107 3.893 9 C -0.580 4.580 10 H 0.079 0.921 11 C -0.134 4.134 12 N -0.524 5.524 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.318 3.682 18 O -0.446 6.446 19 C -0.276 4.276 20 S 0.288 5.712 21 C -0.133 4.133 22 N -0.263 5.263 23 C -0.049 4.049 24 C -0.119 4.119 25 N -0.152 5.152 26 N -0.191 5.191 27 H 0.287 0.713 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.156 0.844 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.524 2.799 -4.320 9.958 hybrid contribution -0.930 -0.396 1.321 1.663 sum 7.594 2.403 -2.999 8.511 Atomic orbital electron populations 1.21880 0.95895 1.01870 1.01470 1.21624 0.96313 0.96058 1.01896 1.21562 1.00420 0.95637 0.94374 1.21538 1.00817 0.99242 0.94058 1.21767 1.00893 1.00808 0.97166 1.21470 0.98146 0.96667 0.83782 1.48081 1.18784 1.34858 1.29157 1.19740 0.93267 0.83416 0.92925 1.21476 1.26020 0.93712 1.16774 0.92087 1.24883 0.96573 0.94699 0.97216 1.69916 1.41109 1.01453 1.39892 0.86525 0.80378 0.79266 0.81845 1.19704 1.20879 1.20770 1.19455 0.81946 0.83179 0.83658 1.90641 1.63992 1.30063 1.59936 1.23782 0.96108 1.04239 1.03437 1.86065 1.23673 1.38659 1.22785 1.26879 0.88152 0.98074 1.00176 1.71094 1.31550 1.11923 1.11765 1.24372 0.88867 0.97468 0.94196 1.20129 1.03290 0.92120 0.96401 1.77821 1.22750 1.04907 1.09707 1.47779 1.18554 1.29383 1.23362 0.71253 0.93085 0.91432 0.93387 0.92824 0.90911 0.91330 0.91523 0.92256 0.92626 0.93307 0.92996 0.89809 0.91016 0.92872 0.94451 0.92550 0.85900 0.84402 0.89754 0.90131 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.45 37.16 0.31 -1.93 16 2 C -0.12 -1.80 4.86 -26.73 -0.13 -1.93 16 3 C -0.10 -1.48 2.37 -90.62 -0.21 -1.70 16 4 C -0.12 -1.47 5.14 -26.73 -0.14 -1.60 16 5 C -0.15 -1.63 9.53 37.16 0.35 -1.28 16 6 C 0.12 2.10 4.73 -4.04 -0.02 2.08 16 7 N -0.58 -11.24 2.28 -175.05 -0.40 -11.64 16 8 C 0.23 4.95 4.02 -5.19 -0.02 4.93 16 9 C -0.54 -13.34 9.28 -34.44 -0.32 -13.66 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 12 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 13 Si 0.89 20.17 29.54 -169.99 -5.02 15.14 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.53 10.36 7.69 -10.99 -0.08 10.28 16 18 O -0.56 -11.69 15.44 5.55 0.09 -11.61 16 19 C -0.12 -2.24 4.25 36.01 0.15 -2.09 16 20 S 0.06 0.96 21.45 -107.50 -2.31 -1.34 16 21 C 0.25 4.01 8.31 -89.38 -0.74 3.27 16 22 N -0.53 -9.35 10.57 -10.85 -0.11 -9.47 16 23 C 0.24 3.72 8.13 -156.87 -1.28 2.44 16 24 C -0.06 -0.71 10.51 36.01 0.38 -0.33 16 25 N -0.32 -4.92 12.78 32.42 0.41 -4.50 16 26 N -0.47 -6.49 7.47 30.45 0.23 -6.26 16 27 H 0.44 4.46 8.96 -182.35 -1.63 2.83 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.10 5.62 -51.93 -0.29 0.81 16 30 H 0.05 0.60 6.64 -51.93 -0.34 0.26 16 31 H 0.05 0.72 6.80 -51.93 -0.35 0.37 16 32 H 0.07 1.24 5.69 -51.93 -0.30 0.95 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.79 6.26 -51.93 -0.32 0.47 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.60 6.89 -51.93 -0.36 0.24 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.44 6.05 -51.93 -0.31 1.13 16 40 H 0.07 1.26 7.42 -51.93 -0.39 0.87 16 41 H 0.05 1.19 4.87 -51.93 -0.25 0.94 16 42 H 0.04 0.87 6.44 -51.93 -0.33 0.53 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.12 2.20 7.40 -51.91 -0.38 1.81 16 45 H 0.14 2.72 8.00 -51.92 -0.42 2.30 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -29.09 395.17 -10.88 -39.97 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.62 Total: 6.32 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.84 Total: 0.15 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.86 Total: -54.59 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.31 Total: -1.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.09 -10.88 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081354921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.683 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds