Wall clock time and date at job start Wed Apr 1 2020 00:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47525 * 2 1 4 4 C 1.52989 * 109.47241 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47241 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47370 * 180.02562 * 5 4 3 7 7 N 1.29522 * 126.14306 * 90.02802 * 6 5 4 8 8 N 1.26249 * 116.57510 * 179.97438 * 7 6 5 9 9 C 1.29891 * 117.66437 * 359.97438 * 8 7 6 10 10 N 1.39076 * 125.65222 * 179.97438 * 9 8 7 11 11 C 1.34776 * 120.00230 * 0.02562 * 10 9 8 12 12 O 1.21286 * 120.00036 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00039 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47170 * 180.02562 * 13 11 10 15 15 C 1.46894 * 111.00086 * 66.04255 * 14 13 11 16 16 C 1.46902 * 111.00057 * 190.00389 * 14 13 11 17 17 H 1.09001 * 109.47582 * 54.99027 * 16 14 13 18 18 C 1.53006 * 109.46626 * 294.99442 * 16 14 13 19 19 C 1.50698 * 109.46927 * 174.99790 * 16 14 13 20 20 H 1.07993 * 120.00472 * 359.97438 * 19 16 14 21 21 C 1.37882 * 119.99554 * 179.97438 * 19 16 14 22 22 N 1.31515 * 120.00420 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99716 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47454 * 59.99745 * 23 21 19 25 25 H 1.48503 * 109.46926 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47302 * 299.99567 * 23 21 19 27 27 S 1.71303 * 108.69150 * 0.22756 * 9 8 7 28 28 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46902 * 299.99966 * 1 2 3 30 30 H 1.09001 * 109.47670 * 59.99532 * 1 2 3 31 31 H 1.09004 * 109.46902 * 240.00034 * 2 1 3 32 32 H 1.08995 * 109.47285 * 120.00272 * 2 1 3 33 33 H 1.08997 * 109.46671 * 59.99909 * 3 2 1 34 34 H 1.08997 * 109.46561 * 300.00284 * 3 2 1 35 35 H 1.08997 * 109.47543 * 60.00221 * 4 3 2 36 36 H 1.09001 * 109.47632 * 300.00270 * 4 3 2 37 37 H 1.09004 * 109.47003 * 59.99874 * 5 4 3 38 38 H 1.08995 * 109.47061 * 300.00187 * 5 4 3 39 39 H 0.97005 * 119.99514 * 180.02562 * 10 9 8 40 40 H 1.09000 * 109.47453 * 60.00135 * 13 11 10 41 41 H 1.09004 * 109.47204 * 299.99948 * 13 11 10 42 42 H 1.09001 * 109.46934 * 183.95621 * 15 14 13 43 43 H 1.08998 * 109.47599 * 303.95835 * 15 14 13 44 44 H 1.09002 * 109.47223 * 63.95893 * 15 14 13 45 45 H 1.09001 * 109.47002 * 179.97438 * 18 16 14 46 46 H 1.08993 * 109.46955 * 300.00347 * 18 16 14 47 47 H 1.09000 * 109.47050 * 60.00176 * 18 16 14 48 48 H 0.97001 * 120.00306 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.5870 2.8849 -0.0026 7 7 6.3501 2.8852 -1.0492 8 7 7.5952 2.8856 -0.8404 9 6 7.9997 2.8861 0.3940 10 7 9.3260 2.8861 0.8123 11 6 10.3198 2.8860 -0.0980 12 8 10.0575 2.8864 -1.2822 13 6 11.7570 2.8866 0.3554 14 7 12.6407 2.8870 -0.8181 15 6 12.5120 4.1402 -1.5736 16 6 14.0363 2.6493 -0.4263 17 1 14.1003 1.7248 0.1476 18 6 14.5313 3.8165 0.4304 19 6 14.8922 2.5343 -1.6613 20 1 14.4442 2.6280 -2.6394 21 6 16.2474 2.3096 -1.5423 22 7 16.7931 2.1960 -0.3512 23 14 17.3082 2.1663 -3.0732 24 1 17.2207 3.4254 -3.8558 25 1 18.7193 1.9274 -2.6770 26 1 16.8282 1.0329 -3.9038 27 16 6.6286 2.8797 1.4210 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 3.7171 3.3990 0.8887 38 1 3.7163 3.3985 -0.8912 39 1 9.5358 2.8862 1.7594 40 1 11.9492 1.9969 0.9551 41 1 11.9486 3.7769 0.9544 42 1 13.1235 4.0858 -2.4743 43 1 11.4689 4.2917 -1.8513 44 1 12.8482 4.9730 -0.9560 45 1 15.5667 3.6400 0.7216 46 1 14.4673 4.7410 -0.1433 47 1 13.9122 3.8997 1.3237 48 1 17.7466 2.0382 -0.2675 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138171237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:34 Heat of formation + Delta-G solvation = 29.957992 kcal Electronic energy + Delta-G solvation = -26334.250630 eV Core-core repulsion = 22551.799974 eV Total energy + Delta-G solvation = -3782.450655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39866 -39.76835 -37.05223 -36.75241 -35.17242 -33.49424 -32.72859 -30.45884 -29.24330 -28.08443 -27.16395 -25.45319 -25.19292 -24.06138 -22.83051 -21.70936 -21.43230 -20.11984 -19.41962 -18.78615 -17.56380 -16.77167 -16.23919 -16.13338 -16.03371 -15.14148 -15.04081 -14.76557 -14.34355 -14.17245 -14.10459 -13.84196 -13.76948 -13.37529 -13.29087 -12.77948 -12.58007 -12.53671 -12.29506 -11.70334 -11.53952 -11.48329 -11.40447 -11.23159 -11.10495 -10.94791 -10.91781 -10.84157 -10.75584 -10.64162 -10.51577 -10.30903 -10.08382 -9.98268 -9.78990 -9.42370 -8.92673 -8.80941 -8.40503 -7.23900 -6.03547 -4.06539 0.31166 0.38520 1.01145 2.39744 2.64107 2.91341 3.34429 3.37651 3.42372 3.88681 4.33808 4.39181 4.42819 4.50035 4.59693 4.76012 4.91327 4.96041 4.99086 5.06556 5.21290 5.29214 5.29414 5.32916 5.41653 5.47663 5.58402 5.60920 5.66279 5.67383 5.76777 5.87616 5.91014 5.94979 6.30344 6.38551 6.61890 6.74943 6.88908 6.98717 7.01307 7.37845 7.65437 7.79518 8.00964 8.13697 8.30653 8.51882 8.59936 8.99183 9.58509 11.03785 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.027972 B = 0.001742 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.743019 B =16073.340107 C =16465.662986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.033 4.033 6 C 0.001 3.999 7 N -0.223 5.223 8 N -0.274 5.274 9 C 0.244 3.756 10 N -0.634 5.634 11 C 0.503 3.497 12 O -0.441 6.441 13 C 0.044 3.956 14 N -0.517 5.517 15 C 0.029 3.971 16 C 0.212 3.788 17 H 0.042 0.958 18 C -0.174 4.174 19 C -0.499 4.499 20 H 0.064 0.936 21 C 0.059 3.941 22 N -0.896 5.896 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.276 1.276 27 S 0.086 5.914 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.423 0.577 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.014 0.986 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.006 0.994 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.481 0.754 9.968 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.074 4.074 6 C -0.282 4.282 7 N -0.059 5.059 8 N -0.118 5.118 9 C -0.126 4.126 10 N -0.288 5.288 11 C 0.287 3.713 12 O -0.305 6.305 13 C -0.088 4.088 14 N -0.241 5.241 15 C -0.119 4.119 16 C 0.106 3.894 17 H 0.059 0.941 18 C -0.234 4.234 19 C -0.538 4.538 20 H 0.083 0.917 21 C -0.142 4.142 22 N -0.536 5.536 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.202 1.202 27 S 0.325 5.675 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.261 0.739 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.109 0.891 46 H 0.052 0.948 47 H 0.025 0.975 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -28.334 0.330 8.482 29.578 hybrid contribution 1.186 0.591 0.431 1.393 sum -27.148 0.921 8.913 28.588 Atomic orbital electron populations 1.21775 0.95849 1.01639 1.01791 1.21534 0.95861 0.96770 1.02255 1.21607 0.94418 0.97177 1.02415 1.21652 0.95796 0.94899 1.03257 1.20193 0.83568 0.99031 1.04653 1.29856 1.02359 1.07594 0.88406 1.71435 0.96282 1.12241 1.25910 1.71567 1.05690 1.20047 1.14487 1.26069 0.92388 1.01376 0.92733 1.43529 1.00178 1.73207 1.11905 1.21748 0.87290 0.75967 0.86303 1.90812 1.82913 1.40883 1.15861 1.21908 0.87890 1.03006 0.96021 1.62126 1.08969 1.34707 1.18340 1.22386 1.01144 0.89438 0.98954 1.19391 0.80663 0.93975 0.95364 0.94063 1.22442 1.04151 0.99781 0.96979 1.21063 0.91773 1.48437 0.92527 0.91750 1.24906 0.97875 0.95275 0.96140 1.69861 1.11908 1.49910 1.21871 0.86544 0.78991 0.78721 0.83081 1.20322 1.21407 1.20162 1.84672 0.98620 1.72144 1.12035 0.92807 0.92781 0.92714 0.91864 0.91987 0.91737 0.91547 0.90939 0.91526 0.89331 0.88188 0.73929 0.87904 0.92022 0.90548 0.92278 0.96713 0.89076 0.94816 0.97488 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.15 0.37 -0.34 16 2 C -0.13 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.57 5.21 -26.74 -0.14 -0.71 16 4 C -0.12 -0.72 5.20 -26.74 -0.14 -0.86 16 5 C -0.03 -0.22 5.84 -27.88 -0.16 -0.38 16 6 C 0.00 0.01 7.05 -13.25 -0.09 -0.09 16 7 N -0.22 -3.36 11.65 33.58 0.39 -2.97 16 8 N -0.27 -4.72 9.74 29.97 0.29 -4.43 16 9 C 0.24 3.34 8.14 -87.06 -0.71 2.63 16 10 N -0.63 -7.90 5.41 -12.92 -0.07 -7.97 16 11 C 0.50 8.36 7.48 -10.99 -0.08 8.28 16 12 O -0.44 -9.36 13.01 5.55 0.07 -9.28 16 13 C 0.04 0.74 4.89 -4.98 -0.02 0.71 16 14 N -0.52 -11.24 4.48 -237.73 -1.06 -12.31 16 15 C 0.03 0.61 8.53 60.06 0.51 1.12 16 16 C 0.21 5.18 2.34 -68.86 -0.16 5.02 16 17 H 0.04 1.08 8.03 -51.93 -0.42 0.67 16 18 C -0.17 -4.00 8.28 37.16 0.31 -3.69 16 19 C -0.50 -13.65 7.94 -34.44 -0.27 -13.92 16 20 H 0.06 1.80 6.75 -52.49 -0.35 1.45 16 21 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 22 N -0.90 -25.00 11.32 55.43 0.63 -24.38 16 23 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 S 0.09 0.79 23.31 -107.50 -2.51 -1.72 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.42 3.35 8.82 -40.82 -0.36 2.99 16 40 H 0.10 1.54 8.00 -51.93 -0.42 1.12 16 41 H 0.06 0.92 6.94 -51.93 -0.36 0.56 16 42 H 0.08 1.73 6.53 -51.93 -0.34 1.39 16 43 H 0.06 1.23 5.82 -51.93 -0.30 0.93 16 44 H 0.01 0.29 6.28 -51.93 -0.33 -0.03 16 45 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 46 H 0.03 0.76 6.38 -51.93 -0.33 0.43 16 47 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 48 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -33.90 396.08 -9.82 -43.72 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.66 Total: -1.58 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.85 Total: -1.50 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.18 Total: -52.06 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.90 -9.82 -43.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138171237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.674 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds