Wall clock time and date at job start Wed Apr 1 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00020 * 2 1 4 4 N 1.46501 * 109.47094 * 124.72318 * 3 2 1 5 5 C 1.35316 * 125.86623 * 124.71332 * 4 3 2 6 6 C 1.35357 * 106.17169 * 179.90736 * 5 4 3 7 7 C 1.50700 * 126.74674 * 180.12666 * 6 5 4 8 8 N 1.46507 * 109.46874 * 95.29591 * 7 6 5 9 9 C 1.34774 * 119.99633 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00477 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99894 * 179.97438 * 9 8 7 12 12 C 1.53005 * 109.47208 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.46888 * 54.99888 * 12 11 9 14 14 C 1.50707 * 109.46985 * 294.99746 * 12 11 9 15 15 H 1.08000 * 119.99437 * 325.12992 * 14 12 11 16 16 C 1.37874 * 119.99851 * 145.12484 * 14 12 11 17 17 N 1.31517 * 119.99923 * 184.98639 * 16 14 12 18 18 Si 1.86797 * 120.00098 * 4.99308 * 16 14 12 19 19 H 1.48496 * 109.47180 * 84.72437 * 18 16 14 20 20 H 1.48499 * 109.47015 * 204.72947 * 18 16 14 21 21 H 1.48504 * 109.47095 * 324.72347 * 18 16 14 22 22 C 1.50700 * 109.46848 * 175.00037 * 12 11 9 23 23 C 1.38233 * 120.00435 * 64.69122 * 22 12 11 24 24 C 1.38229 * 120.00326 * 179.78101 * 23 22 12 25 25 C 1.38237 * 119.99863 * 0.45071 * 24 23 22 26 26 C 1.38237 * 120.00045 * 359.79970 * 25 24 23 27 27 C 1.38236 * 119.99566 * 244.95890 * 22 12 11 28 28 N 1.33764 * 106.49567 * 0.34776 * 6 5 4 29 29 N 1.28636 * 108.89242 * 359.77976 * 28 6 5 30 30 H 1.07999 * 120.00247 * 180.27410 * 1 2 3 31 31 H 1.08003 * 119.99594 * 0.27561 * 1 2 3 32 32 H 1.08002 * 120.00115 * 179.71817 * 2 1 3 33 33 H 1.08997 * 109.46895 * 244.71841 * 3 2 1 34 34 H 1.08999 * 109.47470 * 4.72452 * 3 2 1 35 35 H 1.07996 * 126.91631 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.46745 * 215.28931 * 7 6 5 37 37 H 1.08996 * 109.47654 * 335.29157 * 7 6 5 38 38 H 0.96997 * 120.00305 * 359.97438 * 8 7 6 39 39 H 1.08994 * 109.47146 * 299.99658 * 11 9 8 40 40 H 1.09003 * 109.47125 * 59.99824 * 11 9 8 41 41 H 0.96996 * 119.99626 * 179.97438 * 17 16 14 42 42 H 1.08004 * 119.99557 * 359.97438 * 23 22 12 43 43 H 1.08003 * 120.00252 * 180.26917 * 24 23 22 44 44 H 1.08001 * 119.99970 * 179.83398 * 25 24 23 45 45 H 1.07997 * 120.00238 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.00135 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3232 1.5494 1.0651 6 6 4.7814 1.4944 2.3376 7 6 6.2072 1.6742 2.7910 8 7 6.4196 3.0666 3.1941 9 6 7.6287 3.4624 3.6389 10 8 8.5408 2.6658 3.7061 11 6 7.8474 4.8948 4.0530 12 6 9.2947 5.0770 4.5147 13 1 9.9716 4.7437 3.7281 14 6 9.5311 4.2615 5.7599 15 1 8.7401 4.1421 6.4854 16 6 10.7572 3.6680 5.9727 17 7 10.9339 2.8768 7.0083 18 14 12.1675 3.9877 4.7902 19 1 12.8613 5.2430 5.1751 20 1 13.1263 2.8551 4.8455 21 1 11.6360 4.1192 3.4098 22 6 9.5476 6.5325 4.8119 23 6 8.8730 7.1543 5.8459 24 6 9.1083 8.4883 6.1214 25 6 10.0115 9.2030 5.3569 26 6 10.6824 8.5826 4.3196 27 6 10.4503 7.2474 4.0470 28 7 3.7203 1.2444 3.1128 29 7 2.6737 1.1553 2.3702 30 1 -0.5400 -0.9353 0.0045 31 1 -0.5399 0.9354 -0.0045 32 1 1.8500 -0.9353 0.0046 33 1 2.6252 1.4003 -0.9292 34 1 1.3583 2.1319 0.0846 35 1 4.9051 1.7302 0.1735 36 1 6.4048 1.0167 3.6377 37 1 6.8829 1.4257 1.9727 38 1 5.6901 3.7036 3.1408 39 1 7.6504 5.5519 3.2060 40 1 7.1713 5.1438 4.8710 41 1 11.7964 2.4589 7.1577 42 1 8.1642 6.5970 6.4405 43 1 8.5844 8.9729 6.9320 44 1 10.1934 10.2459 5.5705 45 1 11.3883 9.1408 3.7227 46 1 10.9744 6.7627 3.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424908024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:45 Heat of formation + Delta-G solvation = 112.733893 kcal Electronic energy + Delta-G solvation = -27934.170028 eV Core-core repulsion = 24019.864854 eV Total energy + Delta-G solvation = -3914.305174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.48115 -39.14757 -38.32149 -36.55313 -34.78664 -33.89525 -32.98558 -31.69023 -31.33633 -30.19107 -29.07145 -27.70693 -26.85143 -25.22896 -22.59974 -22.44070 -21.86800 -21.60350 -20.49069 -20.19449 -19.15568 -17.78212 -16.90190 -16.66691 -16.48025 -15.92772 -15.71798 -15.34841 -15.16005 -14.57926 -14.55136 -14.14617 -14.12783 -13.78793 -13.58087 -13.08378 -12.89739 -12.68254 -12.56699 -12.46000 -12.23304 -12.06646 -11.84134 -11.82738 -11.63652 -11.13307 -10.97179 -10.75435 -10.49037 -10.45420 -10.33550 -10.14011 -9.82481 -9.60512 -9.54393 -9.02931 -8.86905 -8.55965 -8.36902 -8.20984 -7.79226 -5.92032 -3.88593 1.27096 1.38974 2.10363 2.15679 2.25469 2.30874 3.45641 3.49875 3.50227 3.53801 3.82950 3.96294 4.08085 4.26094 4.43805 4.54519 4.61003 4.62838 4.81838 4.88806 5.21795 5.28639 5.33776 5.52778 5.55286 5.57388 5.70015 5.82168 5.87236 5.91488 5.93614 5.98392 6.05543 6.07307 6.13670 6.26347 6.30671 6.35721 6.65740 6.71956 6.85664 6.88301 7.07527 7.15489 7.28548 7.61884 7.75612 7.87196 8.08408 8.32748 8.59499 9.05499 9.08486 9.72193 11.21273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002339 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.521893 B =11966.008408 C =13033.323366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.183 4.183 3 C 0.145 3.855 4 N -0.293 5.293 5 C -0.035 4.035 6 C -0.030 4.030 7 C 0.209 3.791 8 N -0.743 5.743 9 C 0.516 3.484 10 O -0.498 6.498 11 C -0.114 4.114 12 C 0.046 3.954 13 H 0.058 0.942 14 C -0.484 4.484 15 H 0.072 0.928 16 C 0.086 3.914 17 N -0.898 5.898 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.292 1.292 21 H -0.261 1.261 22 C -0.039 4.039 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.125 4.125 27 C -0.141 4.141 28 N -0.251 5.251 29 N -0.080 5.080 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.193 0.807 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.261 0.739 42 H 0.121 0.879 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.390 1.812 -17.810 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.202 4.202 3 C 0.025 3.975 4 N -0.086 5.086 5 C -0.186 4.186 6 C -0.169 4.169 7 C 0.084 3.916 8 N -0.399 5.399 9 C 0.302 3.698 10 O -0.369 6.369 11 C -0.155 4.155 12 C 0.027 3.973 13 H 0.076 0.924 14 C -0.521 4.521 15 H 0.090 0.910 16 C -0.117 4.117 17 N -0.535 5.535 18 Si 0.700 3.300 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.186 1.186 22 C -0.040 4.040 23 C -0.120 4.120 24 C -0.144 4.144 25 C -0.168 4.168 26 C -0.143 4.143 27 C -0.159 4.159 28 N -0.119 5.119 29 N -0.059 5.059 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.210 0.790 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.227 0.773 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.693 0.797 -16.673 24.324 hybrid contribution 1.260 0.544 -1.383 1.948 sum -16.434 1.341 -18.056 24.451 Atomic orbital electron populations 1.24006 0.95450 1.02902 0.96098 1.22850 0.96418 0.97316 1.03567 1.21180 0.92097 0.98407 0.85809 1.47448 1.07189 1.45990 1.08005 1.23510 0.84693 1.08919 1.01516 1.22095 0.97317 1.07371 0.90071 1.19269 0.86328 0.85229 1.00806 1.46141 1.13736 1.10146 1.69920 1.20802 0.81293 0.91366 0.76307 1.90752 1.41648 1.54530 1.49977 1.21633 1.01424 0.91699 1.00697 1.18309 0.91824 0.88174 0.98992 0.92404 1.20599 0.99258 1.28572 1.03710 0.91037 1.24874 0.98355 0.93761 0.94670 1.69891 1.24073 1.30474 1.29107 0.86957 0.82598 0.77615 0.82878 1.20321 1.21863 1.18621 1.20813 0.93370 0.96734 0.93077 1.20989 1.00207 0.93582 0.97174 1.21066 0.98935 0.95024 0.99398 1.20859 0.99228 0.99162 0.97587 1.20958 0.99928 0.95115 0.98279 1.21079 1.00184 0.94126 1.00507 1.75174 0.95543 1.15168 1.26004 1.78362 1.21537 1.19054 0.86980 0.87315 0.87847 0.86393 0.86742 0.87868 0.79017 0.89751 0.90122 0.77333 0.91433 0.89795 0.92885 0.86149 0.87172 0.87434 0.87374 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 14.32 29.01 0.42 -0.20 16 2 C -0.18 -0.94 9.63 -36.02 -0.35 -1.29 16 3 C 0.15 0.68 6.90 -5.19 -0.04 0.65 16 4 N -0.29 -2.67 3.43 -62.44 -0.21 -2.89 16 5 C -0.03 -0.31 11.50 -17.04 -0.20 -0.51 16 6 C -0.03 -0.38 6.62 -82.78 -0.55 -0.93 16 7 C 0.21 2.96 6.23 -5.19 -0.03 2.92 16 8 N -0.74 -11.26 5.55 -61.47 -0.34 -11.60 16 9 C 0.52 10.13 7.58 -10.99 -0.08 10.05 16 10 O -0.50 -12.23 14.98 5.56 0.08 -12.15 16 11 C -0.11 -2.14 4.96 -27.88 -0.14 -2.28 16 12 C 0.05 1.06 1.21 -92.92 -0.11 0.95 16 13 H 0.06 1.42 4.70 -51.93 -0.24 1.18 16 14 C -0.48 -13.44 6.87 -34.44 -0.24 -13.67 16 15 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 17 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 18 Si 0.87 22.89 27.15 -169.99 -4.62 18.28 16 19 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.26 -6.56 6.06 56.52 0.34 -6.22 16 22 C -0.04 -0.83 4.55 -104.62 -0.48 -1.30 16 23 C -0.10 -1.99 8.87 -39.59 -0.35 -2.34 16 24 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 25 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 26 C -0.12 -2.14 10.05 -39.58 -0.40 -2.53 16 27 C -0.14 -2.75 9.43 -39.58 -0.37 -3.12 16 28 N -0.25 -3.76 12.41 33.29 0.41 -3.35 16 29 N -0.08 -1.04 12.92 60.35 0.78 -0.26 16 30 H 0.11 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.10 0.32 7.84 -52.48 -0.41 -0.09 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.11 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.10 0.36 7.79 -51.93 -0.40 -0.04 16 35 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.39 5.02 8.46 -40.82 -0.35 4.67 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.50 7.86 -51.93 -0.41 1.09 16 41 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 42 H 0.12 2.34 7.80 -52.48 -0.41 1.93 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.11 2.05 7.95 -52.49 -0.42 1.64 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -37.40 394.56 -7.46 -44.86 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.48 Total: 5.41 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.80 Total: -16.57 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 1.41 Total: -45.77 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.62 Total: 18.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.40 -7.46 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424908024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.592 kcal (2) G-P(sol) polarization free energy of solvation -37.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds