Wall clock time and date at job start Tue Mar 31 2020 22:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30217 * 124.92586 * 2 1 4 4 C 1.35553 * 109.70624 * 179.97438 * 3 2 1 5 5 C 1.40018 * 133.40025 * 180.02562 * 4 3 2 6 6 C 1.36191 * 120.07587 * 179.77890 * 5 4 3 7 7 C 1.40169 * 120.51606 * 0.47530 * 6 5 4 8 8 C 1.47605 * 119.93314 * 179.77474 * 7 6 5 9 9 O 1.21588 * 120.00197 * 135.64304 * 8 7 6 10 10 N 1.34783 * 120.00395 * 315.64777 * 8 7 6 11 11 C 1.47162 * 120.71145 * 184.21586 * 10 8 7 12 12 C 1.53887 * 108.02420 * 132.75075 * 11 10 8 13 13 H 1.09001 * 112.57896 * 182.22312 * 12 11 10 14 14 C 1.54128 * 107.71457 * 306.32588 * 12 11 10 15 15 C 1.54280 * 104.89010 * 89.41079 * 14 12 11 16 16 C 1.54548 * 104.84848 * 359.81159 * 15 14 12 17 17 H 1.08995 * 112.17833 * 146.40780 * 16 15 14 18 18 C 1.49246 * 120.76591 * 4.30224 * 10 8 7 19 19 N 1.48304 * 107.21143 * 58.36585 * 12 11 10 20 20 C 1.36939 * 128.07915 * 106.69280 * 19 12 11 21 21 H 1.08005 * 119.99853 * 164.72453 * 20 19 12 22 22 C 1.38806 * 120.00246 * 344.73727 * 20 19 12 23 23 N 1.31628 * 119.99626 * 350.15799 * 22 20 19 24 24 Si 1.86796 * 120.00385 * 170.16291 * 22 20 19 25 25 H 1.48495 * 109.47260 * 179.97438 * 24 22 20 26 26 H 1.48505 * 109.46898 * 299.99299 * 24 22 20 27 27 H 1.48493 * 109.47230 * 59.99273 * 24 22 20 28 28 C 1.39365 * 120.12971 * 359.50443 * 7 6 5 29 29 C 1.38411 * 119.57672 * 0.25096 * 28 7 6 30 30 N 1.35850 * 124.92481 * 179.97438 * 2 1 3 31 31 H 0.97000 * 126.36808 * 359.97438 * 30 2 1 32 32 H 1.09005 * 109.47081 * 270.02052 * 1 2 3 33 33 H 1.08991 * 109.47321 * 30.02147 * 1 2 3 34 34 H 1.09002 * 109.46813 * 150.02275 * 1 2 3 35 35 H 1.08000 * 119.96455 * 359.97438 * 5 4 3 36 36 H 1.08003 * 119.73885 * 180.25142 * 6 5 4 37 37 H 1.08999 * 109.74728 * 13.12203 * 11 10 8 38 38 H 1.08996 * 109.74835 * 252.38559 * 11 10 8 39 39 H 1.09006 * 110.50369 * 330.47504 * 14 12 11 40 40 H 1.09003 * 110.27963 * 208.23348 * 14 12 11 41 41 H 1.08994 * 110.36403 * 240.96526 * 15 14 12 42 42 H 1.09000 * 110.36323 * 118.65020 * 15 14 12 43 43 H 1.08993 * 110.52059 * 107.82019 * 18 10 8 44 44 H 1.09010 * 109.74865 * 346.59280 * 18 10 8 45 45 H 0.97003 * 119.99794 * 180.02562 * 23 22 20 46 46 H 1.08003 * 120.21413 * 180.23057 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0676 0.0000 4 6 3.5605 0.7118 0.0006 5 6 4.7559 1.4409 0.0013 6 6 5.9523 0.7901 0.0063 7 6 6.0005 -0.6107 0.0008 8 6 7.3043 -1.3028 0.0013 9 8 7.4865 -2.2558 0.7340 10 7 8.2930 -0.8783 -0.8105 11 6 9.5665 -1.6114 -0.8906 12 6 9.9191 -1.7922 -2.3776 13 1 10.8357 -2.3636 -2.5239 14 6 8.7090 -2.4497 -3.0699 15 6 7.8278 -1.2706 -3.5319 16 6 8.5858 -0.0052 -3.0709 17 1 8.4549 0.8275 -3.7620 18 6 8.1217 0.3462 -1.6464 19 7 10.0012 -0.4382 -2.9770 20 6 11.1219 0.2494 -3.3596 21 1 11.0324 1.1135 -4.0015 22 6 12.3729 -0.1641 -2.9229 23 7 12.4722 -1.0901 -1.9927 24 14 13.9154 0.5935 -3.6551 25 1 15.1136 -0.0148 -3.0232 26 1 13.9446 0.3404 -5.1181 27 1 13.9142 2.0573 -3.4059 28 6 4.8200 -1.3514 0.0005 29 6 3.6015 -0.6948 0.0004 30 7 2.2848 -1.1138 0.0005 31 1 1.9737 -2.0326 0.0013 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8897 -0.5141 34 1 -0.3633 -0.8902 -0.5135 35 1 4.7292 2.5206 0.0010 36 1 6.8710 1.3579 0.0109 37 1 9.4605 -2.5868 -0.4159 38 1 10.3512 -1.0420 -0.3926 39 1 8.1627 -3.0790 -2.3673 40 1 9.0374 -3.0367 -3.9276 41 1 6.8482 -1.3202 -3.0566 42 1 7.7246 -1.2767 -4.6170 43 1 8.7252 1.1644 -1.2537 44 1 7.0713 0.6371 -1.6626 45 1 13.3464 -1.3788 -1.6872 46 1 4.8556 -2.4308 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029529355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:14 Heat of formation + Delta-G solvation = 83.660256 kcal Electronic energy + Delta-G solvation = -30103.669222 eV Core-core repulsion = 26188.103321 eV Total energy + Delta-G solvation = -3915.565901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.32730 -40.11575 -38.11078 -36.82486 -33.70669 -33.34775 -32.38348 -31.72432 -30.58490 -30.19028 -29.28813 -28.07809 -26.16186 -23.96037 -23.93311 -22.70034 -22.42311 -21.14155 -20.07240 -19.62521 -18.78196 -18.03472 -17.56268 -16.66496 -15.80322 -15.72493 -15.58048 -15.26643 -14.62967 -14.60470 -14.14441 -13.90708 -13.76138 -13.46523 -13.40770 -13.25046 -13.03218 -12.92689 -12.74061 -12.29425 -11.97562 -11.80154 -11.70241 -11.57187 -11.38214 -11.00502 -10.87007 -10.84361 -10.77372 -10.34441 -10.19352 -10.05898 -9.86485 -9.69522 -9.55889 -9.34771 -8.78732 -8.47163 -8.25195 -8.02166 -6.84622 -5.84757 -3.19952 0.65766 1.34618 2.43772 2.58940 3.20118 3.36001 3.41487 3.42288 3.53418 3.84826 3.87165 4.38629 4.41413 4.74035 4.82791 4.91165 5.03294 5.15154 5.18334 5.25582 5.28557 5.32364 5.43476 5.51518 5.61222 5.70832 5.76537 5.86593 5.94076 5.95507 6.15799 6.22436 6.30924 6.33189 6.35791 6.42926 6.53445 6.62590 6.66698 6.71567 6.79660 6.86899 6.97361 7.08178 7.29786 7.48965 7.66284 7.68630 8.03051 8.13190 8.65431 9.04786 9.67187 10.43799 11.28303 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024054 B = 0.002855 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.791015 B = 9803.850826 C =10061.111760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.495 5.495 4 C 0.064 3.936 5 C -0.073 4.073 6 C -0.097 4.097 7 C -0.097 4.097 8 C 0.550 3.450 9 O -0.555 6.555 10 N -0.583 5.583 11 C 0.113 3.887 12 C 0.169 3.831 13 H 0.118 0.882 14 C -0.137 4.137 15 C -0.122 4.122 16 C 0.133 3.867 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.584 5.584 20 C -0.228 4.228 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.912 5.912 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.058 4.058 29 C 0.038 3.962 30 N -0.596 5.596 31 H 0.423 0.577 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.256 0.744 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.353 0.449 2.220 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.015 3.985 3 N -0.216 5.216 4 C -0.055 4.055 5 C -0.092 4.092 6 C -0.117 4.117 7 C -0.101 4.101 8 C 0.338 3.662 9 O -0.436 6.436 10 N -0.314 5.314 11 C -0.010 4.010 12 C 0.062 3.938 13 H 0.135 0.865 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.024 3.976 17 H 0.096 0.904 18 C -0.040 4.040 19 N -0.305 5.305 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.558 5.558 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.211 1.211 28 C -0.080 4.080 29 C -0.071 4.071 30 N -0.208 5.208 31 H 0.261 0.739 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.157 0.860 2.600 21.333 hybrid contribution 0.950 -0.879 -0.282 1.324 sum -20.207 -0.019 2.318 20.339 Atomic orbital electron populations 1.20379 0.84173 1.04739 1.04251 1.23620 0.95702 0.81089 0.98062 1.70370 1.00990 1.27511 1.22733 1.19156 0.91982 0.90206 1.04193 1.19906 0.88645 0.99950 1.00728 1.20952 0.98301 0.93000 0.99494 1.19706 0.93148 0.93775 1.03511 1.18105 0.83609 0.83761 0.80751 1.90749 1.82356 1.29238 1.41236 1.48659 1.15201 1.27195 1.40344 1.22477 0.82468 0.95758 1.00285 1.21782 0.96130 0.87249 0.88683 0.86471 1.22579 0.98253 0.97049 0.99696 1.22456 0.97616 0.96467 0.99559 1.21958 0.87023 0.95602 0.92983 0.90412 1.23297 1.00446 0.86586 0.93623 1.45158 0.99431 1.13717 1.72165 1.18943 0.83273 1.09921 1.23480 0.90615 1.24835 0.97695 0.99641 0.97784 1.69840 1.23182 1.32953 1.29844 0.86210 0.82530 0.78489 0.78540 1.21629 1.21206 1.21104 1.19836 0.87796 0.99679 1.00672 1.18666 0.85163 0.95338 1.07946 1.42981 1.04819 1.09878 1.63152 0.73852 0.89339 0.88466 0.90173 0.84755 0.84161 0.91336 0.90028 0.92953 0.92865 0.92999 0.92687 0.91013 0.90253 0.93405 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.71 8.07 -154.91 -1.25 1.46 16 3 N -0.49 -6.45 11.26 -8.19 -0.09 -6.54 16 4 C 0.06 0.88 7.23 -84.62 -0.61 0.27 16 5 C -0.07 -0.94 10.03 -39.65 -0.40 -1.33 16 6 C -0.10 -1.31 7.23 -39.59 -0.29 -1.60 16 7 C -0.10 -1.49 5.20 -104.93 -0.55 -2.04 16 8 C 0.55 10.32 7.30 -12.44 -0.09 10.23 16 9 O -0.56 -12.10 16.46 5.29 0.09 -12.02 16 10 N -0.58 -11.13 2.28 -171.00 -0.39 -11.52 16 11 C 0.11 2.47 5.78 -3.22 -0.02 2.45 16 12 C 0.17 3.79 3.10 -65.89 -0.20 3.59 16 13 H 0.12 2.99 6.40 -51.93 -0.33 2.66 16 14 C -0.14 -2.63 6.16 -25.47 -0.16 -2.79 16 15 C -0.12 -2.14 6.19 -25.25 -0.16 -2.29 16 16 C 0.13 2.52 4.27 -65.66 -0.28 2.24 16 17 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 18 C 0.08 1.46 4.53 -2.06 -0.01 1.45 16 19 N -0.58 -13.57 2.80 -152.84 -0.43 -14.00 16 20 C -0.23 -5.87 10.37 -15.06 -0.16 -6.02 16 21 H 0.08 1.89 7.85 -52.48 -0.41 1.48 16 22 C 0.00 -0.06 5.41 -17.43 -0.09 -0.15 16 23 N -0.91 -24.85 10.42 55.49 0.58 -24.27 16 24 Si 0.91 21.06 29.56 -169.99 -5.03 16.03 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 C -0.06 -0.81 9.69 -39.10 -0.38 -1.19 16 29 C 0.04 0.48 7.29 -84.00 -0.61 -0.13 16 30 N -0.60 -5.56 6.23 -8.04 -0.05 -5.61 16 31 H 0.42 2.43 8.96 -40.82 -0.37 2.07 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.14 1.79 6.42 -52.48 -0.34 1.45 16 37 H 0.07 1.52 7.15 -51.93 -0.37 1.15 16 38 H 0.08 2.03 7.79 -51.93 -0.40 1.62 16 39 H 0.05 0.99 7.83 -51.93 -0.41 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.85 7.86 -51.93 -0.41 0.44 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 44 H 0.08 1.17 4.66 -51.92 -0.24 0.92 16 45 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -32.26 365.03 -10.91 -43.17 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.22 Total: 5.10 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -4.87 Total: 4.16 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.38 Total: -61.94 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.26 -10.91 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029529355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.831 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds