Wall clock time and date at job start Wed Apr 1 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46866 * 2 1 4 4 H 1.08996 * 109.87137 * 53.73691 * 3 2 1 5 5 C 1.54319 * 109.88206 * 292.71591 * 3 2 1 6 6 H 1.09001 * 110.72420 * 336.75877 * 5 3 2 7 7 N 1.46503 * 110.71916 * 100.03265 * 5 3 2 8 8 C 1.34772 * 120.00066 * 205.00197 * 7 5 3 9 9 O 1.21547 * 120.00142 * 359.97438 * 8 7 5 10 10 C 1.47908 * 120.00160 * 179.97438 * 8 7 5 11 11 N 1.32378 * 120.63537 * 354.21719 * 10 8 7 12 12 N 1.28092 * 123.17865 * 179.74097 * 11 10 8 13 13 C 1.31795 * 123.49631 * 0.55987 * 12 11 10 14 14 C 1.40397 * 119.14232 * 359.73038 * 13 12 11 15 15 C 1.40234 * 122.74608 * 180.02562 * 14 13 12 16 16 C 1.36261 * 119.36891 * 179.97438 * 15 14 13 17 17 C 1.39379 * 121.07694 * 359.97438 * 16 15 14 18 18 C 1.36360 * 121.08567 * 0.02562 * 17 16 15 19 19 C 1.39833 * 119.42034 * 359.97438 * 18 17 16 20 20 C 1.55401 * 102.82913 * 218.48339 * 5 3 2 21 21 C 1.54914 * 101.66594 * 35.34003 * 20 5 3 22 22 N 1.47025 * 109.87890 * 174.74979 * 3 2 1 23 23 C 1.36933 * 125.64980 * 298.39774 * 22 3 2 24 24 H 1.08006 * 119.99892 * 345.29593 * 23 22 3 25 25 C 1.38811 * 120.00318 * 165.30291 * 23 22 3 26 26 N 1.31622 * 119.99864 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00467 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47303 * 59.99270 * 27 25 23 29 29 H 1.48492 * 109.47340 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46933 * 299.99909 * 27 25 23 31 31 H 1.09002 * 109.47023 * 305.56881 * 1 2 3 32 32 H 1.08992 * 109.47125 * 65.56634 * 1 2 3 33 33 H 1.08998 * 109.47146 * 185.56872 * 1 2 3 34 34 H 1.09004 * 109.46663 * 239.99740 * 2 1 3 35 35 H 1.08997 * 109.47232 * 120.00123 * 2 1 3 36 36 H 0.97002 * 119.99752 * 24.99326 * 7 5 3 37 37 H 1.08005 * 120.43062 * 179.70125 * 13 12 11 38 38 H 1.07999 * 120.31859 * 359.95175 * 15 14 13 39 39 H 1.07998 * 119.45995 * 179.97438 * 16 15 14 40 40 H 1.08002 * 119.45536 * 180.02562 * 17 16 15 41 41 H 1.07998 * 120.29253 * 179.97438 * 18 17 16 42 42 H 1.09005 * 110.89522 * 277.27161 * 20 5 3 43 43 H 1.08996 * 111.03938 * 153.47608 * 20 5 3 44 44 H 1.08997 * 110.36853 * 204.23516 * 21 20 5 45 45 H 1.09003 * 110.36447 * 81.90964 * 21 20 5 46 46 H 0.97002 * 120.00226 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9939 0.8265 5 6 1.6865 2.1241 -1.3386 6 1 1.5385 1.3812 -2.1224 7 7 0.4987 2.9691 -1.1923 8 6 -0.2694 3.2435 -2.2652 9 8 0.0236 2.7903 -3.3543 10 6 -1.4690 4.0961 -2.1173 11 7 -1.8644 4.5025 -0.9212 12 7 -2.8919 5.2450 -0.7374 13 6 -3.6656 5.6712 -1.7155 14 6 -3.3607 5.3071 -3.0367 15 6 -4.1313 5.7180 -4.1339 16 6 -3.7719 5.3243 -5.3879 17 6 -2.6519 4.5214 -5.5965 18 6 -1.8805 4.1038 -4.5525 19 6 -2.2191 4.4885 -3.2514 20 6 2.9461 2.9863 -1.6300 21 6 4.0778 2.0844 -1.0771 22 7 3.5047 1.4550 0.1265 23 6 4.2184 0.9627 1.1864 24 1 3.7180 0.7380 2.1167 25 6 5.5852 0.7525 1.0652 26 7 6.1950 1.0260 -0.0687 27 14 6.5590 0.0816 2.5112 28 1 6.0238 -1.2498 2.8934 29 1 7.9873 -0.0512 2.1272 30 1 6.4398 1.0119 3.6625 31 1 -0.3633 0.5978 0.8359 32 1 -0.3633 0.4251 -0.9356 33 1 -0.3633 -1.0228 0.0997 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.2650 3.3309 -0.3232 37 1 -4.5235 6.2921 -1.5034 38 1 -5.0016 6.3403 -3.9864 39 1 -4.3645 5.6396 -6.2339 40 1 -2.3907 4.2250 -6.6017 41 1 -1.0156 3.4815 -4.7288 42 1 2.9025 3.9329 -1.0912 43 1 3.0672 3.1531 -2.7003 44 1 4.9476 2.6860 -0.8131 45 1 4.3494 1.3245 -1.8098 46 1 7.1501 0.8788 -0.1536 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087653154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:00 Heat of formation + Delta-G solvation = 68.314357 kcal Electronic energy + Delta-G solvation = -29338.245656 eV Core-core repulsion = 25422.014306 eV Total energy + Delta-G solvation = -3916.231350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77679 -39.66181 -38.35746 -37.75008 -34.18074 -33.67557 -32.75696 -32.12889 -31.74773 -30.68237 -28.98457 -26.90407 -25.79252 -24.60149 -24.37927 -23.19368 -22.17749 -21.04727 -20.25735 -19.77272 -18.72540 -18.40178 -17.48466 -16.87536 -16.36630 -15.99369 -15.70471 -15.04057 -14.89391 -14.73333 -14.39937 -14.24982 -14.00165 -13.85312 -13.73610 -13.13945 -12.92891 -12.67812 -12.66883 -12.05897 -11.94592 -11.92906 -11.70204 -11.65650 -11.13010 -10.91366 -10.86951 -10.81492 -10.62042 -10.44156 -10.28744 -10.10296 -10.02431 -9.77238 -9.74159 -9.66539 -9.63999 -8.90538 -8.66732 -8.56468 -6.79890 -5.74484 -3.10693 -0.36122 0.25016 1.25528 2.36250 2.91785 2.96069 3.40911 3.45619 3.46333 3.63893 3.68116 4.00362 4.14038 4.26004 4.35250 4.49774 4.66476 4.74658 4.84306 5.11013 5.24011 5.29285 5.36767 5.39271 5.47897 5.55216 5.57239 5.77770 5.79006 5.82251 5.86456 5.97601 6.00688 6.08387 6.22527 6.26891 6.38834 6.42837 6.48077 6.55413 6.65397 6.72730 6.95869 7.13023 7.50530 7.55120 7.62381 7.79258 8.14660 8.27683 8.42157 9.19043 9.79873 10.47576 11.37567 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022728 B = 0.002571 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.669630 B =10886.260873 C =11270.470371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.160 3.840 4 H 0.038 0.962 5 C 0.133 3.867 6 H 0.099 0.901 7 N -0.683 5.683 8 C 0.576 3.424 9 O -0.530 6.530 10 C 0.074 3.926 11 N -0.229 5.229 12 N -0.263 5.263 13 C 0.098 3.902 14 C -0.086 4.086 15 C -0.098 4.098 16 C -0.095 4.095 17 C -0.103 4.103 18 C -0.088 4.088 19 C -0.048 4.048 20 C -0.157 4.157 21 C 0.175 3.825 22 N -0.593 5.593 23 C -0.227 4.227 24 H 0.075 0.925 25 C -0.003 4.003 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.180 0.820 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.176 0.824 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.721 9.510 -10.307 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.052 3.948 4 H 0.056 0.944 5 C 0.029 3.971 6 H 0.117 0.883 7 N -0.332 5.332 8 C 0.359 3.641 9 O -0.407 6.407 10 C -0.083 4.083 11 N -0.065 5.065 12 N -0.095 5.095 13 C -0.076 4.076 14 C -0.094 4.094 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.107 4.107 19 C -0.055 4.055 20 C -0.196 4.196 21 C 0.050 3.950 22 N -0.318 5.318 23 C -0.356 4.356 24 H 0.093 0.907 25 C -0.200 4.200 26 N -0.564 5.564 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.247 0.753 37 H 0.197 0.803 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.193 0.807 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.893 9.089 -9.250 24.590 hybrid contribution -0.023 -0.111 -0.402 0.417 sum -20.916 8.977 -9.652 24.723 Atomic orbital electron populations 1.21775 0.97256 1.00526 1.00959 1.22015 0.93544 0.99056 1.02474 1.21088 0.87333 0.93491 0.92877 0.94429 1.22312 0.82901 0.92460 0.99386 0.88312 1.45984 1.26292 1.49817 1.11116 1.17399 0.81528 0.80237 0.84979 1.90617 1.71725 1.52822 1.25489 1.23097 0.96715 0.97486 0.91031 1.72761 1.07795 1.05416 1.20575 1.72659 1.00367 1.06830 1.29656 1.24820 0.98552 0.95452 0.88727 1.18919 0.96030 0.98685 0.95729 1.20939 0.99379 0.99986 0.91530 1.21178 0.96564 0.96327 0.97402 1.21296 0.94416 0.96496 1.00055 1.22086 1.00863 0.97630 0.90135 1.18632 0.94570 0.97242 0.95088 1.23497 0.96421 0.99228 1.00486 1.21432 0.92891 0.93073 0.87628 1.44424 0.98436 1.69273 1.19653 1.18899 0.90119 1.36375 0.90185 0.90715 1.24903 0.97085 1.00939 0.97082 1.69913 1.09356 1.53065 1.24032 0.86228 0.79096 0.79030 0.81568 1.21089 1.21633 1.21113 0.93232 0.93566 0.93667 0.92408 0.91511 0.75316 0.80263 0.84217 0.84942 0.84750 0.80672 0.91887 0.91754 0.90731 0.95315 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.65 37.16 0.36 -1.92 16 2 C -0.13 -2.47 5.43 -26.73 -0.15 -2.61 16 3 C 0.16 3.21 2.91 -66.95 -0.19 3.01 16 4 H 0.04 0.75 7.71 -51.93 -0.40 0.35 16 5 C 0.13 2.40 2.11 -65.96 -0.14 2.26 16 6 H 0.10 1.86 7.18 -51.93 -0.37 1.49 16 7 N -0.68 -10.63 4.96 -52.82 -0.26 -10.90 16 8 C 0.58 8.89 7.78 -12.30 -0.10 8.79 16 9 O -0.53 -8.90 13.23 5.32 0.07 -8.83 16 10 C 0.07 1.04 6.90 -82.42 -0.57 0.48 16 11 N -0.23 -3.27 10.70 33.56 0.36 -2.91 16 12 N -0.26 -3.38 11.41 30.90 0.35 -3.03 16 13 C 0.10 0.91 11.20 -16.76 -0.19 0.73 16 14 C -0.09 -0.83 5.75 -106.85 -0.61 -1.45 16 15 C -0.10 -0.64 9.84 -39.54 -0.39 -1.03 16 16 C -0.10 -0.59 9.95 -39.87 -0.40 -0.99 16 17 C -0.10 -0.82 9.95 -39.83 -0.40 -1.21 16 18 C -0.09 -0.97 9.27 -39.66 -0.37 -1.34 16 19 C -0.05 -0.58 5.77 -106.57 -0.61 -1.20 16 20 C -0.16 -3.02 6.78 -24.45 -0.17 -3.19 16 21 C 0.17 4.18 5.41 -2.53 -0.01 4.16 16 22 N -0.59 -14.61 3.13 -162.57 -0.51 -15.12 16 23 C -0.23 -6.15 9.71 -15.06 -0.15 -6.30 16 24 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 25 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 26 N -0.92 -26.49 10.58 55.49 0.59 -25.90 16 27 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.71 7.48 -51.93 -0.39 0.32 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.14 8.02 -51.93 -0.42 0.72 16 35 H 0.07 1.35 7.84 -51.93 -0.41 0.94 16 36 H 0.41 6.06 7.76 -40.82 -0.32 5.75 16 37 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.18 2.20 5.12 -52.49 -0.27 1.93 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.98 6.94 -51.93 -0.36 1.62 16 45 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -31.62 375.80 -9.21 -40.83 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.28 Total: 5.35 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.17 Total: -1.99 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.53 Total: -57.85 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.07 Total: -8.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.62 -9.21 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087653154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.146 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds