Wall clock time and date at job start Wed Apr 1 2020 00:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21554 * 120.00294 * 0.02562 * 8 7 5 10 10 C 1.47865 * 119.99845 * 180.02562 * 8 7 5 11 11 C 1.40635 * 120.26288 * 0.02562 * 10 8 7 12 12 N 1.30858 * 121.65972 * 179.97438 * 11 10 8 13 13 C 1.33587 * 121.58323 * 0.02562 * 12 11 10 14 14 C 1.40645 * 121.62930 * 180.02562 * 13 12 11 15 15 N 1.31151 * 120.03842 * 179.97438 * 14 13 12 16 16 C 1.32496 * 122.89048 * 0.02827 * 15 14 13 17 17 C 1.36313 * 121.71188 * 359.97438 * 16 15 14 18 18 C 1.40602 * 118.65065 * 359.97438 * 17 16 15 19 19 C 1.38992 * 120.25880 * 179.72891 * 10 8 7 20 20 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 21 21 C 1.54910 * 101.58094 * 35.30826 * 20 5 3 22 22 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 23 23 C 1.36929 * 125.64715 * 298.39367 * 22 3 2 24 24 H 1.07995 * 120.00262 * 333.70687 * 23 22 3 25 25 C 1.38817 * 119.99616 * 153.71303 * 23 22 3 26 26 N 1.31623 * 119.99847 * 334.82944 * 25 23 22 27 27 Si 1.86801 * 120.00106 * 154.83543 * 25 23 22 28 28 H 1.48500 * 109.46938 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47159 * 239.99924 * 27 25 23 30 30 H 1.48497 * 109.47066 * 119.99285 * 27 25 23 31 31 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 32 32 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 33 33 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 34 34 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 35 35 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 36 36 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 37 37 H 1.07998 * 119.17083 * 359.97438 * 11 10 8 38 38 H 1.07995 * 119.98086 * 359.96061 * 14 13 12 39 39 H 1.07999 * 119.14361 * 180.02562 * 16 15 14 40 40 H 1.08001 * 120.67330 * 180.02562 * 17 16 15 41 41 H 1.07993 * 121.11517 * 359.97438 * 19 10 8 42 42 H 1.09000 * 111.00497 * 277.23103 * 20 5 3 43 43 H 1.08995 * 111.00085 * 153.37724 * 20 5 3 44 44 H 1.08998 * 110.36323 * 204.15638 * 21 20 5 45 45 H 1.08998 * 110.37052 * 81.82802 * 21 20 5 46 46 H 0.96994 * 120.00061 * 353.73735 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0260 0.8679 -1.0628 10 6 5.7094 1.6770 -3.2322 11 6 4.8350 2.2911 -4.1466 12 7 5.1987 2.5506 -5.3765 13 6 6.4194 2.2442 -5.8245 14 6 6.8115 2.5232 -7.1461 15 7 8.0182 2.2093 -7.5529 16 6 8.9135 1.6278 -6.7683 17 6 8.6341 1.3151 -5.4712 18 6 7.3597 1.6227 -4.9632 19 6 6.9955 1.3395 -3.6368 20 6 3.9754 2.6210 0.8567 21 6 2.9035 2.4946 1.9679 22 7 1.6707 2.1033 1.2604 23 6 0.3933 2.3150 1.7059 24 1 -0.4192 2.3937 0.9989 25 6 0.1428 2.4287 3.0666 26 7 0.9579 1.8681 3.9349 27 14 -1.3511 3.3769 3.6653 28 1 -2.1014 3.9067 2.4984 29 1 -0.9097 4.5057 4.5233 30 1 -2.2296 2.4726 4.4499 31 1 -0.3634 -1.0171 -0.1468 32 1 -0.3633 0.3815 0.9543 33 1 -0.3633 0.6357 -0.8074 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.4132 2.1561 -2.0887 37 1 3.8382 2.5552 -3.8256 38 1 6.1186 2.9959 -7.8263 39 1 9.8904 1.3962 -7.1664 40 1 9.3768 0.8415 -4.8464 41 1 7.6903 0.8717 -2.9551 42 1 3.8993 3.5820 0.3479 43 1 4.9767 2.4730 1.2611 44 1 2.7645 3.4512 2.4714 45 1 3.1896 1.7254 2.6852 46 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087658329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:17 Heat of formation + Delta-G solvation = 51.692428 kcal Electronic energy + Delta-G solvation = -28801.724655 eV Core-core repulsion = 24884.772524 eV Total energy + Delta-G solvation = -3916.952130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.69127 -40.03473 -38.44931 -37.75615 -34.54164 -34.10875 -32.70723 -32.43470 -31.57550 -30.85368 -28.72568 -27.16718 -25.70837 -24.96893 -24.28346 -23.03319 -22.05497 -21.45923 -20.45040 -19.84657 -18.88544 -18.28272 -17.83453 -17.39056 -16.64908 -16.16537 -15.49190 -15.47013 -14.80711 -14.76924 -14.63599 -14.40644 -14.00124 -13.67850 -13.61685 -13.55474 -13.25163 -13.03920 -12.95507 -12.86655 -12.46818 -12.20803 -11.70905 -11.28608 -11.14960 -10.99375 -10.80137 -10.61510 -10.49386 -10.31371 -10.19773 -10.17348 -10.09603 -9.90984 -9.78677 -9.76458 -9.47678 -8.98556 -8.88875 -8.43642 -6.96016 -6.09601 -3.26978 -0.39182 0.01797 1.28748 2.16778 2.93355 2.99850 3.47912 3.50552 3.58764 3.61303 3.63203 3.89482 3.98326 4.16294 4.20312 4.27544 4.52248 4.58169 4.74595 4.94679 5.05547 5.07693 5.23463 5.24193 5.29347 5.35668 5.41929 5.56676 5.62256 5.82260 5.86282 5.91156 5.96281 6.03745 6.09015 6.20206 6.28571 6.41550 6.51975 6.59616 6.69888 6.88974 6.97542 7.04013 7.16511 7.29107 7.39866 7.44809 7.82784 8.04536 8.45175 8.96957 9.74519 10.32355 11.18210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.002239 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.921104 B =12503.097665 C =12773.084157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.038 0.962 5 C 0.135 3.865 6 H 0.095 0.905 7 N -0.705 5.705 8 C 0.560 3.440 9 O -0.531 6.531 10 C -0.168 4.168 11 C 0.161 3.839 12 N -0.456 5.456 13 C 0.081 3.919 14 C 0.163 3.837 15 N -0.469 5.469 16 C 0.072 3.928 17 C -0.133 4.133 18 C -0.087 4.087 19 C 0.007 3.993 20 C -0.144 4.144 21 C 0.143 3.857 22 N -0.589 5.589 23 C -0.326 4.326 24 H 0.064 0.936 25 C -0.024 4.024 26 N -0.913 5.913 27 Si 1.069 2.931 28 H -0.291 1.291 29 H -0.290 1.290 30 H -0.294 1.294 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.399 0.601 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.161 0.839 40 H 0.146 0.854 41 H 0.159 0.841 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.030 0.970 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 -0.496 -19.116 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.030 3.970 6 H 0.113 0.887 7 N -0.356 5.356 8 C 0.346 3.654 9 O -0.409 6.409 10 C -0.174 4.174 11 C -0.013 4.013 12 N -0.164 5.164 13 C -0.043 4.043 14 C -0.010 4.010 15 N -0.178 5.178 16 C -0.070 4.070 17 C -0.153 4.153 18 C -0.094 4.094 19 C -0.020 4.020 20 C -0.183 4.183 21 C 0.017 3.983 22 N -0.315 5.315 23 C -0.454 4.454 24 H 0.082 0.918 25 C -0.227 4.227 26 N -0.553 5.553 27 Si 0.898 3.102 28 H -0.218 1.218 29 H -0.217 1.217 30 H -0.221 1.221 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.234 0.766 37 H 0.185 0.815 38 H 0.192 0.808 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.177 0.823 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.061 0.231 -18.654 22.214 hybrid contribution 0.804 -1.066 -0.161 1.345 sum 12.865 -0.834 -18.814 22.808 Atomic orbital electron populations 1.21892 0.95555 0.98921 1.04264 1.21887 0.97180 0.97486 0.99691 1.21208 0.89350 0.92461 0.92114 0.94468 1.22186 0.95865 0.99343 0.79579 0.88660 1.45985 1.13601 1.61475 1.14506 1.17903 0.82395 0.78968 0.86177 1.90799 1.53418 1.42824 1.53823 1.21205 0.96233 1.03837 0.96153 1.23218 0.99215 0.91022 0.87856 1.67901 1.15741 1.17192 1.15548 1.20073 0.90428 0.97564 0.96187 1.23172 0.92499 0.93900 0.91424 1.67470 1.02193 1.10252 1.37853 1.22322 0.98918 0.95322 0.90487 1.22014 0.95636 1.00217 0.97434 1.18961 0.95800 0.99887 0.94712 1.21947 0.94964 0.91480 0.93630 1.23198 0.99514 0.97649 0.97988 1.21556 0.85235 0.98729 0.92742 1.44520 1.01938 1.65319 1.19742 1.19644 0.83735 1.49323 0.92670 0.91798 1.25845 1.03960 1.00506 0.92363 1.70704 1.19028 1.29126 1.36451 0.83478 0.75060 0.76394 0.75220 1.21762 1.21702 1.22132 0.95180 0.88926 0.94244 0.94298 0.92525 0.76575 0.81479 0.80771 0.82181 0.83646 0.82326 0.91508 0.91463 0.93021 0.95181 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.98 37.16 0.33 -2.47 16 2 C -0.12 -2.26 5.47 -26.73 -0.15 -2.40 16 3 C 0.16 2.92 3.00 -66.94 -0.20 2.72 16 4 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 5 C 0.13 2.23 2.76 -66.09 -0.18 2.04 16 6 H 0.10 1.72 7.40 -51.92 -0.38 1.33 16 7 N -0.71 -9.18 5.16 -52.96 -0.27 -9.45 16 8 C 0.56 7.51 7.78 -12.32 -0.10 7.42 16 9 O -0.53 -8.89 16.12 5.32 0.09 -8.81 16 10 C -0.17 -1.82 5.89 -104.77 -0.62 -2.43 16 11 C 0.16 1.56 10.68 -17.06 -0.18 1.38 16 12 N -0.46 -4.78 10.33 -10.65 -0.11 -4.89 16 13 C 0.08 0.82 6.62 -84.81 -0.56 0.26 16 14 C 0.16 1.47 11.25 -16.93 -0.19 1.28 16 15 N -0.47 -4.31 10.28 -13.11 -0.13 -4.45 16 16 C 0.07 0.53 11.08 -17.96 -0.20 0.33 16 17 C -0.13 -0.97 9.88 -39.38 -0.39 -1.35 16 18 C -0.09 -0.82 5.75 -106.80 -0.61 -1.44 16 19 C 0.01 0.07 9.51 -38.48 -0.37 -0.30 16 20 C -0.14 -2.54 6.77 -24.58 -0.17 -2.71 16 21 C 0.14 3.15 5.56 -2.53 -0.01 3.13 16 22 N -0.59 -13.54 2.92 -162.56 -0.47 -14.01 16 23 C -0.33 -8.35 7.22 -15.06 -0.11 -8.46 16 24 H 0.06 1.65 7.24 -52.49 -0.38 1.27 16 25 C -0.02 -0.64 5.18 -17.43 -0.09 -0.73 16 26 N -0.91 -26.39 13.05 55.49 0.72 -25.67 16 27 Si 1.07 24.43 29.99 -169.99 -5.10 19.34 16 28 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.07 5.52 -51.93 -0.29 1.78 16 33 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.40 4.15 6.34 -40.82 -0.26 3.89 16 37 H 0.17 1.20 6.37 -52.49 -0.33 0.87 16 38 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.16 1.42 7.71 -52.49 -0.40 1.02 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.03 0.72 6.73 -51.93 -0.35 0.37 16 46 H 0.27 7.86 6.20 -40.82 -0.25 7.61 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -31.82 374.88 -9.49 -41.31 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.07 Total: 4.73 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.79 Total: -3.74 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.27 Total: -58.48 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.10 Total: 19.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.82 -9.49 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087658329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.006 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds