Wall clock time and date at job start Wed Apr 1 2020 00:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.52996 * 109.47328 * 240.00351 * 2 1 3 5 5 C 1.50699 * 109.47235 * 59.99852 * 4 2 1 6 6 H 1.07996 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99790 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99822 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47136 * 90.00205 * 9 7 5 11 11 H 1.48503 * 109.47010 * 210.00270 * 9 7 5 12 12 H 1.48500 * 109.46954 * 330.00103 * 9 7 5 13 13 C 1.52993 * 109.47165 * 119.99765 * 2 1 3 14 14 N 1.46496 * 109.47558 * 300.00673 * 13 2 1 15 15 C 1.34777 * 120.00266 * 180.02562 * 14 13 2 16 16 O 1.21355 * 120.00101 * 0.26718 * 15 14 13 17 17 C 1.49336 * 119.99819 * 179.97438 * 15 14 13 18 18 O 1.21395 * 120.00186 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99815 * 179.97438 * 17 15 14 20 20 C 1.40475 * 120.00201 * 179.97438 * 19 17 15 21 21 C 1.40338 * 126.11071 * 0.03111 * 20 19 17 22 22 N 1.30832 * 108.20724 * 179.97438 * 21 20 19 23 23 N 1.40049 * 108.36529 * 0.02562 * 22 21 20 24 24 C 1.46508 * 125.99419 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.46650 * 304.97132 * 24 23 22 26 26 F 1.39898 * 109.46697 * 179.97438 * 25 24 23 27 27 C 1.35230 * 108.01439 * 359.75409 * 23 22 21 28 28 H 1.08992 * 109.47399 * 299.99952 * 1 2 3 29 29 H 1.09001 * 109.47194 * 60.00125 * 1 2 3 30 30 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47248 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47844 * 300.00086 * 3 2 1 33 33 H 1.09002 * 109.47097 * 59.99871 * 3 2 1 34 34 H 1.09004 * 109.47108 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46870 * 299.99783 * 4 2 1 36 36 H 0.97002 * 119.99998 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47340 * 179.97438 * 13 2 1 38 38 H 1.09000 * 109.46925 * 60.00283 * 13 2 1 39 39 H 0.97004 * 120.00206 * 359.97438 * 14 13 2 40 40 H 0.96999 * 120.00047 * 0.02562 * 19 17 15 41 41 H 1.07997 * 125.89709 * 359.95386 * 21 20 19 42 42 H 1.08996 * 109.47111 * 64.96583 * 24 23 22 43 43 H 1.08995 * 109.47153 * 184.97348 * 24 23 22 44 44 H 1.08994 * 109.47080 * 300.00094 * 25 24 23 45 45 H 1.09005 * 109.47124 * 60.00079 * 25 24 23 46 46 H 1.07992 * 126.18271 * 180.27228 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 1.4325 0.1382 -4.8058 9 14 2.9445 -2.0008 -3.9033 10 1 2.0860 -3.2117 -3.9483 11 1 3.7360 -1.9084 -5.1564 12 1 3.8652 -2.0896 -2.7416 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6695 16 8 2.5798 -1.4743 3.7809 17 6 1.3802 0.2134 4.8888 18 8 0.6825 1.2006 4.7774 19 7 1.7058 -0.2470 6.1129 20 6 1.2383 0.4157 7.2599 21 6 0.4285 1.5616 7.2807 22 7 0.2034 1.8806 8.5294 23 7 0.8602 0.9525 9.3471 24 6 0.8642 0.9468 10.8122 25 6 1.3528 2.3027 11.3260 26 9 1.3560 2.2975 12.7250 27 6 1.4852 0.0590 8.5473 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.1301 -0.7207 -1.2494 35 1 1.6767 -1.7488 -1.2493 36 1 1.6663 -0.1936 -5.6868 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7488 1.2492 39 1 0.9941 0.7582 2.3565 40 1 2.2635 -1.0356 6.2019 41 1 0.0557 2.0894 6.4153 42 1 -0.1460 0.7625 11.1775 43 1 1.5293 0.1613 11.1707 44 1 2.3630 2.4871 10.9606 45 1 0.6877 3.0883 10.9675 46 1 2.0753 -0.7848 8.8730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261825821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:47 Heat of formation + Delta-G solvation = -45.469152 kcal Electronic energy + Delta-G solvation = -28524.048471 eV Core-core repulsion = 24172.113874 eV Total energy + Delta-G solvation = -4351.934597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.32321 -41.93534 -40.62708 -38.82578 -37.33765 -35.64671 -34.18733 -33.65316 -32.13130 -30.55583 -28.95398 -27.95225 -26.90753 -26.58566 -24.67501 -24.18936 -22.49676 -21.82531 -21.24743 -20.19903 -19.01562 -18.18210 -17.68141 -17.11811 -16.89795 -16.81323 -16.42643 -16.19101 -15.88323 -15.61862 -15.23934 -15.01015 -14.52658 -14.28763 -14.23181 -13.90791 -13.66879 -13.52826 -13.44977 -13.28954 -12.77924 -12.41563 -12.30404 -12.21914 -11.71693 -11.65734 -11.29508 -11.24670 -11.17147 -11.16056 -11.02355 -10.65267 -10.55766 -10.02399 -9.92639 -9.91625 -9.77000 -9.49281 -9.10105 -9.03306 -8.55783 -8.23857 -6.06078 -4.03743 0.97751 1.47618 1.69255 2.26499 2.40431 3.16138 3.29389 3.37740 3.40506 3.50598 3.62484 3.93948 4.19366 4.33983 4.35921 4.42119 4.43282 4.59856 4.75450 5.01422 5.12774 5.18424 5.24871 5.25622 5.43229 5.57901 5.64054 5.99031 6.03773 6.07353 6.25231 6.27449 6.31496 6.40431 6.56114 6.56748 6.73241 6.84504 6.99222 7.02134 7.12745 7.15082 7.29460 7.31477 7.57555 7.75485 7.90451 8.50542 8.98105 9.56104 11.06580 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.001675 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.803441 B =16715.551731 C =17128.970381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.683 5.683 15 C 0.506 3.494 16 O -0.526 6.526 17 C 0.510 3.490 18 O -0.508 6.508 19 N -0.616 5.616 20 C 0.000 4.000 21 C 0.061 3.939 22 N -0.284 5.284 23 N -0.373 5.373 24 C 0.112 3.888 25 C 0.051 3.949 26 F -0.208 7.208 27 C 0.030 3.970 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.019 0.981 35 H 0.014 0.986 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.413 0.587 40 H 0.423 0.577 41 H 0.210 0.790 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 0.197 31.273 31.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.064 4.064 3 C -0.189 4.189 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.000 4.000 14 N -0.336 5.336 15 C 0.285 3.715 16 O -0.404 6.404 17 C 0.292 3.708 18 O -0.382 6.382 19 N -0.263 5.263 20 C -0.105 4.105 21 C -0.126 4.126 22 N -0.106 5.106 23 N -0.157 5.157 24 C -0.010 4.010 25 C -0.004 4.004 26 F -0.189 7.189 27 C -0.118 4.118 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.251 0.749 40 H 0.260 0.740 41 H 0.227 0.773 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.035 0.995 31.962 31.978 hybrid contribution 1.052 -1.594 -0.747 2.050 sum 1.087 -0.599 31.216 31.241 Atomic orbital electron populations 1.21808 0.94553 1.01397 1.01154 1.20727 0.96069 0.96067 0.93573 1.21805 1.00494 0.95437 1.01148 1.19590 0.96315 0.95489 0.92486 1.21071 1.31940 1.13436 0.88574 0.90330 1.25001 0.95690 0.96746 0.95980 1.69900 1.45860 1.40493 0.97894 0.86857 0.81304 0.83905 0.77667 1.20393 1.21504 1.19006 1.21874 0.99369 0.96286 0.82498 1.46013 1.51081 1.31641 1.04824 1.19693 0.82201 0.85007 0.84603 1.90771 1.37141 1.25816 1.86641 1.20357 0.81203 0.84785 0.84415 1.90657 1.36097 1.25147 1.86283 1.42396 1.50628 1.30580 1.02654 1.17725 1.07524 0.99289 0.85946 1.24628 0.97126 0.95348 0.95518 1.77429 1.18407 1.13334 1.01410 1.47954 1.40152 1.22025 1.05594 1.22175 1.04865 0.99394 0.74609 1.22187 1.04194 0.98314 0.75743 1.92803 1.98182 1.97613 1.30304 1.21845 1.02522 0.98157 0.89267 0.94751 0.90648 0.93297 0.93294 0.90642 0.94758 0.96281 0.96730 0.92770 0.90990 0.91008 0.74864 0.73966 0.77327 0.88385 0.87322 0.89972 0.88964 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.00 -0.02 3.11 -27.89 -0.09 -0.11 16 5 C -0.51 -13.42 8.20 -34.44 -0.28 -13.70 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 9 Si 0.88 21.03 27.47 -169.99 -4.67 16.37 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 C 0.12 1.88 4.56 -4.05 -0.02 1.86 16 14 N -0.68 -9.18 4.95 -60.78 -0.30 -9.48 16 15 C 0.51 6.65 7.89 -11.64 -0.09 6.56 16 16 O -0.53 -7.86 16.48 5.49 0.09 -7.77 16 17 C 0.51 5.95 7.86 -11.64 -0.09 5.86 16 18 O -0.51 -6.59 13.63 5.46 0.07 -6.52 16 19 N -0.62 -5.68 5.45 -10.48 -0.06 -5.74 16 20 C 0.00 0.00 6.90 -83.96 -0.58 -0.58 16 21 C 0.06 0.65 10.84 -17.19 -0.19 0.46 16 22 N -0.28 -2.86 12.40 30.72 0.38 -2.48 16 23 N -0.37 -2.65 3.68 -61.15 -0.23 -2.87 16 24 C 0.11 0.44 6.96 -4.03 -0.03 0.42 16 25 C 0.05 0.24 7.74 37.16 0.29 0.53 16 26 F -0.21 -1.34 17.36 2.25 0.04 -1.30 16 27 C 0.03 0.19 11.49 -16.91 -0.19 0.00 16 28 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 29 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 33 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 34 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 35 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 5.25 5.63 -40.82 -0.23 5.02 16 40 H 0.42 3.09 8.29 -40.82 -0.34 2.75 16 41 H 0.21 2.36 5.92 -52.49 -0.31 2.05 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.11 0.15 8.07 -51.93 -0.42 -0.26 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -32.28 382.72 -5.31 -37.58 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.32 Total: 4.50 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.85 Total: -1.99 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.57 Total: -46.64 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.16 Total: -14.29 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.28 -5.31 -37.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261825821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.884 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds