Wall clock time and date at job start Wed Apr 1 2020 00:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00396 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99767 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99719 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47473 * 89.99591 * 9 8 6 11 11 H 1.08006 * 119.99884 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00331 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99792 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00389 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46897 * 60.00259 * 14 12 10 16 16 H 1.48503 * 109.47333 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47166 * 300.00188 * 14 12 10 18 18 C 1.46498 * 120.00290 * 359.97438 * 8 6 5 19 19 C 1.52998 * 109.47105 * 90.00494 * 18 8 6 20 20 C 1.47202 * 109.47106 * 180.02562 * 19 18 8 21 21 N 6.96654 * 102.38278 * 316.25887 * 2 1 3 22 22 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 23 23 C 1.38365 * 119.84289 * 79.72561 * 22 2 1 24 24 C 1.37951 * 120.14492 * 179.76511 * 23 22 2 25 25 C 1.39631 * 119.84655 * 0.50615 * 24 23 22 26 26 C 1.43201 * 120.15057 * 179.76615 * 25 24 23 27 27 N 6.84437 * 109.46344 * 119.99951 * 2 1 3 28 28 C 1.39628 * 119.69882 * 359.74934 * 25 24 23 29 29 C 1.37949 * 119.85072 * 359.97438 * 28 25 24 30 30 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 31 31 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 33 33 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 34 34 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 35 35 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 36 36 H 1.08999 * 109.47061 * 209.99800 * 9 8 6 37 37 H 1.08996 * 109.47411 * 329.99207 * 9 8 6 38 38 H 0.96997 * 119.99699 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.47372 * 210.00371 * 18 8 6 40 40 H 1.09002 * 109.47010 * 329.99905 * 18 8 6 41 41 H 1.09001 * 109.46734 * 299.99636 * 19 18 8 42 42 H 1.08992 * 109.47153 * 59.99893 * 19 18 8 43 43 H 1.07997 * 119.92487 * 0.02562 * 23 22 2 44 44 H 1.08004 * 120.07303 * 180.23454 * 24 23 22 45 45 H 1.08005 * 120.07351 * 179.97438 * 28 25 24 46 46 H 1.07994 * 119.92776 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 8 2.8677 -1.6986 -3.4703 8 7 2.7283 0.1206 -4.7325 9 6 3.2196 -0.6030 -5.9078 10 6 2.0537 -1.1938 -6.6577 11 1 1.0472 -1.0449 -6.2953 12 6 2.2716 -1.9236 -7.8070 13 7 3.4971 -2.1037 -8.2491 14 14 0.8264 -2.6566 -8.7362 15 1 -0.0864 -1.5685 -9.1700 16 1 1.3243 -3.3889 -9.9283 17 1 0.0921 -3.5946 -7.8495 18 6 2.3902 1.5423 -4.8360 19 6 3.6274 2.3850 -4.5199 20 6 3.2875 3.8135 -4.6233 21 7 3.0239 4.9160 -4.7046 22 6 2.0324 -0.7104 1.2305 23 6 2.0600 -2.0934 1.2640 24 6 2.5232 -2.7501 2.3853 25 6 2.9547 -2.0160 3.4919 26 6 3.4320 -2.6910 4.6612 27 7 3.8106 -3.2266 5.5887 28 6 2.9189 -0.6207 3.4531 29 6 2.4588 0.0233 2.3233 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.4495 -1.4979 -1.4101 34 1 1.0871 0.6163 -2.5526 35 1 2.7589 1.0462 -2.1182 36 1 3.7592 0.0850 -6.5586 37 1 3.8890 -1.4019 -5.5891 38 1 3.6504 -2.6174 -9.0574 39 1 2.0497 1.7621 -5.8478 40 1 1.5976 1.7798 -4.1264 41 1 3.9678 2.1653 -3.5080 42 1 4.4198 2.1474 -5.2295 43 1 1.7223 -2.6599 0.4088 44 1 2.5478 -3.8296 2.4088 45 1 3.2508 -0.0468 4.3058 46 1 2.4310 1.1024 2.2918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271641621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:28 Heat of formation + Delta-G solvation = 48.264919 kcal Electronic energy + Delta-G solvation = -27828.712539 eV Core-core repulsion = 23911.611780 eV Total energy + Delta-G solvation = -3917.100758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.09754 -39.32501 -37.31638 -36.86568 -36.14665 -35.22138 -32.98806 -32.16524 -31.37056 -30.87729 -29.72939 -27.83214 -25.88969 -24.58826 -24.03478 -23.11948 -22.41492 -21.15626 -19.18735 -18.72942 -17.69253 -16.90900 -16.59153 -16.34456 -15.71278 -15.52029 -15.34459 -14.86687 -14.75551 -14.47604 -14.43735 -14.20965 -13.98507 -13.79734 -13.71818 -13.48612 -13.21848 -13.04701 -12.96969 -12.64126 -12.49617 -12.44471 -12.33533 -12.26917 -11.88940 -11.81351 -11.64290 -11.37335 -11.29347 -11.19212 -11.03750 -10.90842 -10.64217 -10.23059 -9.76579 -9.30695 -9.11363 -9.04558 -8.50393 -8.48400 -7.88421 -6.12067 -4.17063 0.48245 1.07055 2.39778 2.66742 2.68658 2.76800 3.25173 3.27109 3.32385 3.34814 3.45667 3.59749 3.62280 3.94934 4.25517 4.38433 4.47551 4.54093 4.57916 4.82559 4.89367 4.91499 5.03385 5.07793 5.09262 5.19359 5.23175 5.24326 5.31323 5.34938 5.46893 5.48439 5.56960 5.68842 5.78332 5.81320 5.94433 6.01851 6.02262 6.22825 6.51970 6.70503 6.96184 7.20930 7.22122 7.33687 7.39309 7.53346 7.83535 8.13575 8.22447 8.80175 8.95179 9.48549 10.95958 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002497 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.337319 B =11208.725539 C =12963.045055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 H 0.092 0.908 4 N -0.664 5.664 5 C 0.037 3.963 6 C 0.506 3.494 7 O -0.518 6.518 8 N -0.598 5.598 9 C 0.246 3.754 10 C -0.529 4.529 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.118 3.882 19 C -0.051 4.051 20 C 0.217 3.783 21 N -0.446 5.446 22 C -0.032 4.032 23 C -0.096 4.096 24 C -0.068 4.068 25 C -0.040 4.040 26 C 0.258 3.742 27 N -0.426 5.426 28 C -0.070 4.070 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.354 0.646 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.265 0.735 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 7.184 17.887 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.007 3.993 3 H 0.110 0.890 4 N -0.297 5.297 5 C -0.095 4.095 6 C 0.292 3.708 7 O -0.393 6.393 8 N -0.331 5.331 9 C 0.127 3.873 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.009 4.009 19 C -0.092 4.092 20 C -0.101 4.101 21 N -0.123 5.123 22 C -0.034 4.034 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.043 4.043 26 C -0.057 4.057 27 N -0.101 5.101 28 C -0.091 4.091 29 C -0.136 4.136 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.175 0.825 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.070 7.318 19.223 20.796 hybrid contribution -1.677 -0.476 -1.235 2.136 sum -4.746 6.841 17.988 19.822 Atomic orbital electron populations 1.22524 0.95757 1.03011 1.02742 1.20557 0.92977 0.97567 0.88244 0.89013 1.60242 1.58042 1.09159 1.02247 1.21985 1.00892 0.96108 0.90519 1.20188 0.79264 0.87700 0.83664 1.90706 1.49009 1.15596 1.84014 1.48215 1.65111 1.08436 1.11331 1.19333 0.95254 0.92232 0.80466 1.21353 0.93284 1.33583 1.08604 0.92524 1.24915 0.95836 0.95957 0.97253 1.69906 1.19485 1.40409 1.23330 0.86590 0.82477 0.79353 0.79173 1.20293 1.21197 1.20193 1.21295 0.93907 0.81512 1.04151 1.19916 1.02005 0.81618 1.05707 1.29147 0.93205 0.94958 0.92823 1.81234 1.08916 1.12881 1.09301 1.20041 0.95168 0.93880 0.94274 1.20956 0.98915 0.94006 0.97541 1.21201 0.95905 1.00189 0.91563 1.15996 1.05871 0.92719 0.89740 1.25802 0.93413 0.93457 0.93013 1.81255 1.09468 1.08407 1.11000 1.21080 0.97456 0.92069 0.98497 1.20915 0.99836 1.00232 0.92635 0.91872 0.91791 0.91610 0.82475 0.92499 0.88565 0.94774 0.93512 0.92580 0.88789 0.90800 0.87508 0.86444 0.84609 0.85037 0.85194 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.14 37.16 0.34 -0.80 16 2 C 0.12 0.84 2.78 -68.86 -0.19 0.65 16 3 H 0.09 0.56 7.65 -51.93 -0.40 0.17 16 4 N -0.66 -6.87 5.33 -109.21 -0.58 -7.45 16 5 C 0.04 0.40 4.52 -4.98 -0.02 0.38 16 6 C 0.51 8.37 7.71 -10.99 -0.08 8.28 16 7 O -0.52 -11.12 15.78 5.56 0.09 -11.04 16 8 N -0.60 -10.02 2.46 -175.06 -0.43 -10.45 16 9 C 0.25 5.56 5.16 -5.19 -0.03 5.53 16 10 C -0.53 -13.57 9.39 -34.44 -0.32 -13.89 16 11 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 14 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.12 1.40 5.17 -4.04 -0.02 1.38 16 19 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 20 C 0.22 2.38 15.44 -20.74 -0.32 2.06 16 21 N -0.45 -6.13 18.54 42.17 0.78 -5.35 16 22 C -0.03 -0.24 4.96 -104.53 -0.52 -0.76 16 23 C -0.10 -0.77 9.30 -39.64 -0.37 -1.14 16 24 C -0.07 -0.53 9.76 -39.17 -0.38 -0.91 16 25 C -0.04 -0.32 5.73 -106.93 -0.61 -0.93 16 26 C 0.26 2.56 15.33 -22.47 -0.34 2.22 16 27 N -0.43 -5.23 18.54 41.84 0.78 -4.45 16 28 C -0.07 -0.47 9.76 -39.17 -0.38 -0.85 16 29 C -0.12 -0.74 9.65 -39.64 -0.38 -1.12 16 30 H 0.06 0.41 7.45 -51.93 -0.39 0.02 16 31 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.35 3.97 7.51 -39.29 -0.29 3.67 16 34 H 0.06 0.52 6.70 -51.93 -0.35 0.17 16 35 H 0.10 0.81 7.10 -51.93 -0.37 0.44 16 36 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 41 H 0.11 0.77 7.22 -51.93 -0.37 0.40 16 42 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.14 1.09 7.23 -52.49 -0.38 0.71 16 44 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 46 H 0.13 0.55 8.03 -52.49 -0.42 0.13 16 LS Contribution 405.61 15.07 6.11 6.11 Total: -1.00 -33.43 405.61 -7.64 -41.07 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.19 Total: -0.89 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -3.92 Total: 1.02 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 1.28 Total: -51.88 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.43 -7.64 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271641621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.339 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds