Wall clock time and date at job start Tue Mar 31 2020 23:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47056 * 2 1 4 4 C 1.50706 * 109.47116 * 240.00454 * 2 1 3 5 5 O 1.21286 * 119.99584 * 248.50869 * 4 2 1 6 6 N 1.34767 * 120.00199 * 68.51068 * 4 2 1 7 7 C 1.39835 * 124.97931 * 185.88627 * 6 4 2 8 8 C 1.39631 * 129.34039 * 359.95759 * 7 6 4 9 9 C 1.37843 * 120.28523 * 179.97438 * 8 7 6 10 10 C 1.38293 * 120.22155 * 0.06353 * 9 8 7 11 11 C 1.38218 * 119.83197 * 359.97438 * 10 9 8 12 12 C 1.38189 * 120.14843 * 359.97304 * 11 10 9 13 13 C 1.51218 * 130.96620 * 180.02562 * 12 11 10 14 14 C 1.46539 * 124.97901 * 5.57838 * 6 4 2 15 15 H 1.09007 * 110.29948 * 298.96531 * 14 6 4 16 16 C 1.52999 * 110.29995 * 61.10697 * 14 6 4 17 17 N 1.46500 * 109.47321 * 119.99954 * 2 1 3 18 18 C 1.35311 * 125.86463 * 35.02376 * 17 2 1 19 19 C 1.35355 * 106.17461 * 179.97438 * 18 17 2 20 20 C 1.50696 * 126.75421 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47348 * 125.04595 * 20 19 18 22 22 H 1.08005 * 120.00168 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00447 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99595 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00362 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47108 * 59.99991 * 25 23 21 27 27 H 1.48497 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47188 * 299.99975 * 25 23 21 29 29 N 1.33773 * 106.49425 * 359.97438 * 19 18 17 30 30 N 1.28638 * 108.88885 * 0.02562 * 29 19 18 31 31 H 1.09000 * 109.47532 * 53.71951 * 1 2 3 32 32 H 1.08998 * 109.47182 * 173.71754 * 1 2 3 33 33 H 1.09000 * 109.46849 * 293.71321 * 1 2 3 34 34 H 1.08001 * 119.85519 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.88577 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.08420 * 179.97438 * 10 9 8 37 37 H 1.07997 * 119.92710 * 180.02562 * 11 10 9 38 38 H 1.08996 * 110.41673 * 298.76303 * 13 12 11 39 39 H 1.09004 * 110.41291 * 61.09151 * 13 12 11 40 40 H 1.08996 * 109.46837 * 49.42826 * 16 14 6 41 41 H 1.09001 * 109.47221 * 169.42785 * 16 14 6 42 42 H 1.09001 * 109.46970 * 289.42873 * 16 14 6 43 43 H 1.07999 * 126.91569 * 359.97438 * 18 17 2 44 44 H 1.08997 * 109.47545 * 245.04744 * 20 19 18 45 45 H 1.09007 * 109.47147 * 5.04647 * 20 19 18 46 46 H 0.96995 * 120.00034 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.5973 -1.7785 -1.1260 6 7 1.8539 -0.1587 -2.4471 7 6 2.1705 -0.7757 -3.6614 8 6 2.7172 -2.0389 -3.8963 9 6 2.9553 -2.4645 -5.1856 10 6 2.6555 -1.6424 -6.2565 11 6 2.1148 -0.3904 -6.0320 12 6 1.8734 0.0401 -4.7413 13 6 1.2990 1.3383 -4.2202 14 6 1.2937 1.1731 -2.6917 15 1 0.2756 1.2317 -2.3065 16 6 2.1707 2.2453 -2.0419 17 7 2.0184 -0.6906 1.1962 18 6 1.4360 -1.7590 1.7880 19 6 2.2133 -2.0712 2.8513 20 6 1.9887 -3.1907 3.8347 21 6 3.2180 -4.0601 3.8956 22 1 4.0764 -3.8253 3.2836 23 6 3.2471 -5.1555 4.7325 24 7 2.2016 -5.4418 5.4773 25 14 4.7706 -6.2336 4.8074 26 1 5.9329 -5.4184 5.2430 27 1 4.5488 -7.3374 5.7757 28 1 5.0411 -6.8024 3.4626 29 7 3.2201 -1.1904 2.8574 30 7 3.0756 -0.3858 1.8641 31 1 -0.3634 0.6081 -0.8284 32 1 -0.3633 -1.0215 -0.1125 33 1 -0.3633 0.4133 0.9409 34 1 2.9545 -2.6852 -3.0642 35 1 3.3780 -3.4429 -5.3599 36 1 2.8434 -1.9780 -7.2658 37 1 1.8797 0.2527 -6.8672 38 1 1.9299 2.1776 -4.5126 39 1 0.2834 1.4802 -4.5899 40 1 3.2116 2.0810 -2.3203 41 1 1.8541 3.2304 -2.3846 42 1 2.0710 2.1884 -0.9579 43 1 0.5328 -2.2616 1.4751 44 1 1.7899 -2.7730 4.8217 45 1 1.1357 -3.7894 3.5151 46 1 2.2222 -6.2121 6.0664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603171056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:14 Heat of formation + Delta-G solvation = 82.803070 kcal Electronic energy + Delta-G solvation = -29322.944376 eV Core-core repulsion = 25407.341305 eV Total energy + Delta-G solvation = -3915.603072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.26345 -42.50710 -40.09373 -37.94534 -36.68096 -35.43553 -33.65596 -33.19454 -32.47418 -31.48652 -30.58440 -29.57081 -27.49829 -26.56958 -25.46397 -24.81357 -23.09301 -22.75458 -22.33235 -22.05771 -20.75313 -18.77707 -18.63836 -18.24293 -17.64851 -17.22931 -16.80570 -16.72596 -16.55509 -16.05787 -15.90442 -15.55689 -15.22596 -14.72766 -14.63018 -14.39072 -14.26959 -13.96249 -13.82481 -13.78925 -13.66215 -13.55927 -13.38298 -13.15120 -12.94328 -12.71893 -12.67045 -12.58232 -12.52531 -12.03743 -11.98034 -11.88858 -11.76522 -11.59526 -11.39296 -11.30084 -10.85292 -10.62565 -9.93250 -9.79970 -8.92184 -8.22731 -6.31158 0.13271 0.35948 0.48216 1.13473 1.24421 1.35468 1.39380 1.47147 1.63778 1.70195 2.41051 2.76862 2.81838 3.09494 3.20711 3.34542 3.51140 3.52598 3.62114 3.89969 3.99318 4.05036 4.14108 4.17610 4.26051 4.32472 4.39484 4.45518 4.48453 4.53878 4.61464 4.71277 4.75669 4.90686 4.94629 5.01129 5.09100 5.20688 5.21344 5.25988 5.36530 5.38900 5.44027 5.49208 5.56349 5.63346 5.72312 6.01291 6.07602 6.18274 6.60875 6.75549 7.34864 7.58346 8.88192 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002817 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.794892 B = 9936.140021 C =11227.225610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 H 0.167 0.833 4 C 0.509 3.491 5 O -0.551 6.551 6 N -0.541 5.541 7 C 0.112 3.888 8 C -0.165 4.165 9 C -0.108 4.108 10 C -0.136 4.136 11 C -0.078 4.078 12 C -0.130 4.130 13 C -0.073 4.073 14 C 0.107 3.893 15 H 0.131 0.869 16 C -0.175 4.175 17 N -0.276 5.276 18 C -0.038 4.038 19 C -0.003 4.003 20 C 0.105 3.895 21 C -0.528 4.528 22 H 0.038 0.962 23 C 0.012 3.988 24 N -0.924 5.924 25 Si 0.960 3.040 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.274 1.274 29 N -0.298 5.298 30 N -0.115 5.115 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.048 0.952 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.212 0.788 44 H 0.016 0.984 45 H 0.032 0.968 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 20.136 -29.005 36.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.184 0.816 4 C 0.297 3.703 5 O -0.427 6.427 6 N -0.265 5.265 7 C 0.018 3.982 8 C -0.186 4.186 9 C -0.126 4.126 10 C -0.154 4.154 11 C -0.096 4.096 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.007 3.993 15 H 0.149 0.851 16 C -0.233 4.233 17 N -0.071 5.071 18 C -0.188 4.188 19 C -0.141 4.141 20 C 0.066 3.934 21 C -0.567 4.567 22 H 0.056 0.944 23 C -0.187 4.187 24 N -0.564 5.564 25 Si 0.784 3.216 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.200 1.200 29 N -0.165 5.165 30 N -0.093 5.093 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.067 0.933 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.229 0.771 44 H 0.034 0.966 45 H 0.050 0.950 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.683 20.444 -28.543 36.167 hybrid contribution 0.448 -2.120 0.587 2.245 sum -8.235 18.323 -27.956 34.425 Atomic orbital electron populations 1.22370 0.85993 1.05795 1.07638 1.22165 1.00158 0.98034 0.77863 0.81647 1.20905 0.79047 0.85402 0.84897 1.90822 1.41666 1.24066 1.86160 1.46005 1.59560 1.18300 1.02638 1.18643 0.99544 0.94215 0.85836 1.20972 1.03565 0.95660 0.98359 1.21141 0.99265 1.00796 0.91404 1.21429 1.00035 0.94356 0.99589 1.20832 0.97242 0.96179 0.95371 1.20453 1.03374 0.97162 0.92271 1.21344 1.04492 0.94487 0.90652 1.22487 0.99703 0.78921 0.98225 0.85142 1.22502 0.99645 1.00022 1.01084 1.47048 1.17407 1.22111 1.20561 1.23462 1.04259 0.94092 0.96986 1.22654 0.92674 0.98968 0.99762 1.17379 0.96824 0.88179 0.90997 1.21217 1.00491 1.10810 1.24144 0.94400 1.25751 0.99527 0.98629 0.94791 1.70016 1.30863 1.28822 1.26652 0.85588 0.79546 0.78294 0.78133 1.19930 1.19375 1.19974 1.74943 1.22318 1.05046 1.14171 1.78036 1.04942 1.22710 1.03614 0.84898 0.90920 0.87921 0.88545 0.84928 0.82720 0.81916 0.86582 0.85650 0.93327 0.86149 0.91757 0.77148 0.96623 0.94974 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.55 71.98 0.62 -1.47 16 2 C 0.12 2.82 2.99 44.25 0.13 2.95 16 3 H 0.17 2.87 4.89 -2.39 -0.01 2.86 16 4 C 0.51 14.45 6.91 87.66 0.61 15.05 16 5 O -0.55 -22.62 14.54 -3.05 -0.04 -22.66 16 6 N -0.54 -11.09 2.89 -607.17 -1.75 -12.84 16 7 C 0.11 2.58 6.62 38.28 0.25 2.83 16 8 C -0.16 -4.59 9.46 22.51 0.21 -4.38 16 9 C -0.11 -2.25 10.02 22.19 0.22 -2.03 16 10 C -0.14 -1.93 10.06 22.28 0.22 -1.71 16 11 C -0.08 -0.91 10.04 22.25 0.22 -0.68 16 12 C -0.13 -1.85 6.23 -19.63 -0.12 -1.97 16 13 C -0.07 -0.40 6.57 30.26 0.20 -0.20 16 14 C 0.11 0.89 3.19 45.23 0.14 1.04 16 15 H 0.13 0.25 5.81 -2.38 -0.01 0.23 16 16 C -0.18 -1.23 8.86 71.98 0.64 -0.59 16 17 N -0.28 -10.00 2.80 -330.73 -0.93 -10.93 16 18 C -0.04 -1.54 10.49 83.49 0.88 -0.67 16 19 C 0.00 -0.17 6.44 41.60 0.27 0.10 16 20 C 0.10 6.03 5.55 29.10 0.16 6.19 16 21 C -0.53 -33.41 9.09 25.60 0.23 -33.17 16 22 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 23 C 0.01 0.70 5.46 84.65 0.46 1.17 16 24 N -0.92 -57.35 13.29 21.45 0.28 -57.06 16 25 Si 0.96 48.21 29.54 68.60 2.03 50.24 16 26 H -0.27 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 29 N -0.30 -15.70 12.40 -48.60 -0.60 -16.31 16 30 N -0.11 -5.14 13.17 37.02 0.49 -4.65 16 31 H 0.13 0.53 5.61 -2.39 -0.01 0.52 16 32 H 0.07 1.11 7.50 -2.39 -0.02 1.09 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 3.45 6.30 -2.91 -0.02 3.43 16 35 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 38 H 0.12 0.22 7.71 -2.39 -0.02 0.20 16 39 H 0.13 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.06 0.50 5.13 -2.39 -0.01 0.49 16 43 H 0.21 6.80 7.48 -2.91 -0.02 6.78 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.03 1.82 8.12 -2.38 -0.02 1.80 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -93.74 375.95 5.84 -87.90 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.01 Total: 3.84 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.35 Total: -17.54 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -2.51 Total: -101.78 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.04 Total: -22.66 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -93.74 5.84 -87.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603171056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.708 kcal (2) G-P(sol) polarization free energy of solvation -93.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds