Wall clock time and date at job start Wed Apr 1 2020 00:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99883 * 2 1 4 4 C 1.53003 * 109.47119 * 300.00520 * 3 2 1 5 5 C 1.53003 * 109.46788 * 60.00233 * 3 2 1 6 6 C 1.50696 * 109.47003 * 180.02562 * 3 2 1 7 7 N 1.30125 * 121.06396 * 124.72467 * 6 3 2 8 8 S 1.69945 * 105.76775 * 179.88088 * 7 6 3 9 9 C 1.72303 * 94.57400 * 0.31386 * 8 7 6 10 10 N 1.38310 * 127.50641 * 179.79140 * 9 8 7 11 11 C 1.46903 * 111.00122 * 124.32988 * 10 9 8 12 12 C 1.53232 * 109.34141 * 172.74750 * 11 10 9 13 13 H 1.08998 * 109.79522 * 294.02659 * 12 11 10 14 14 C 1.53004 * 109.62982 * 173.53713 * 12 11 10 15 15 N 1.47082 * 108.52381 * 53.83314 * 12 11 10 16 16 C 1.36933 * 120.88734 * 128.83384 * 15 12 11 17 17 H 1.08002 * 119.99830 * 331.97198 * 16 15 12 18 18 C 1.38813 * 120.00541 * 151.97131 * 16 15 12 19 19 N 1.31612 * 119.99436 * 342.70655 * 18 16 15 20 20 Si 1.86798 * 120.00243 * 162.70156 * 18 16 15 21 21 H 1.48504 * 109.47083 * 90.00268 * 20 18 16 22 22 H 1.48497 * 109.47234 * 210.00312 * 20 18 16 23 23 H 1.48497 * 109.47334 * 330.00402 * 20 18 16 24 24 C 1.47082 * 118.23357 * 308.81644 * 15 12 11 25 25 H 1.09001 * 109.78922 * 170.99204 * 24 15 12 26 26 C 1.53005 * 109.62610 * 291.47210 * 24 15 12 27 27 C 1.46903 * 111.00115 * 0.03266 * 10 9 8 28 28 N 1.31291 * 121.06256 * 305.00055 * 6 3 2 29 29 H 1.08995 * 109.47589 * 59.99469 * 1 2 3 30 30 H 1.09003 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46961 * 299.99116 * 1 2 3 32 32 H 1.08999 * 109.46989 * 59.99468 * 4 3 2 33 33 H 1.08993 * 109.46711 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46817 * 300.00210 * 4 3 2 35 35 H 1.08998 * 109.47040 * 60.00358 * 5 3 2 36 36 H 1.09003 * 109.46894 * 179.97438 * 5 3 2 37 37 H 1.08996 * 109.47265 * 299.99922 * 5 3 2 38 38 H 1.08999 * 109.48993 * 292.70984 * 11 10 9 39 39 H 1.08998 * 109.49140 * 52.78825 * 11 10 9 40 40 H 1.09000 * 109.47236 * 296.79298 * 14 12 11 41 41 H 1.08998 * 109.46645 * 56.79057 * 14 12 11 42 42 H 1.08994 * 109.47141 * 176.78834 * 14 12 11 43 43 H 0.96998 * 120.00161 * 175.15020 * 19 18 16 44 44 H 1.09004 * 109.47019 * 179.03065 * 26 24 15 45 45 H 1.09002 * 109.46921 * 299.02659 * 26 24 15 46 46 H 1.08998 * 109.47338 * 59.03174 * 26 24 15 47 47 H 1.09004 * 109.48685 * 307.21157 * 27 10 9 48 48 H 1.09003 * 109.49536 * 67.28946 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0649 -1.2492 5 6 1.5587 2.0647 1.2493 6 6 3.5125 1.1866 -0.0006 7 7 4.2316 1.7667 -0.9169 8 16 5.8459 1.3854 -0.5473 9 6 5.4502 0.4424 0.8395 10 7 6.3223 -0.2207 1.6838 11 6 6.1300 0.2026 3.0773 12 6 6.9811 -0.6789 3.9974 13 1 6.6120 -1.7042 3.9714 14 6 6.9123 -0.1441 5.4293 15 7 8.3728 -0.6427 3.5230 16 6 9.4009 -0.3571 4.3813 17 1 9.2244 0.2627 5.2479 18 6 10.6699 -0.8640 4.1374 19 7 10.8272 -1.8718 3.3057 20 14 12.1543 -0.1158 4.9897 21 1 12.3920 -0.8176 6.2767 22 1 13.3491 -0.2593 4.1196 23 1 11.9018 1.3241 5.2503 24 6 8.6311 -0.9219 2.1022 25 1 9.6729 -0.7042 1.8667 26 6 8.3339 -2.3932 1.8053 27 6 7.7151 -0.0309 1.2567 28 7 4.1372 0.4898 0.9202 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 0.4720 2.1508 -1.2491 33 1 2.0016 3.0607 -1.2489 34 1 1.8802 1.5239 -2.1392 35 1 1.8804 1.5238 2.1392 36 1 2.0024 3.0604 1.2496 37 1 0.4722 2.1508 1.2494 38 1 6.4349 1.2434 3.1866 39 1 5.0787 0.1008 3.3465 40 1 7.3441 0.8561 5.4648 41 1 5.8720 -0.1024 5.7519 42 1 7.4717 -0.8051 6.0913 43 1 11.7189 -2.1806 3.0810 44 1 8.5096 -2.5932 0.7483 45 1 8.9868 -3.0245 2.4079 46 1 7.2936 -2.6099 2.0480 47 1 7.8132 -0.3020 0.2054 48 1 7.9978 1.0132 1.3914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882519382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:50 Heat of formation + Delta-G solvation = 36.650863 kcal Electronic energy + Delta-G solvation = -28895.664990 eV Core-core repulsion = 25113.504560 eV Total energy + Delta-G solvation = -3782.160430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.83472 -40.60540 -39.23066 -36.86603 -34.43993 -34.10907 -33.14320 -32.11068 -29.80954 -28.47489 -28.21964 -28.04517 -27.12180 -25.82733 -24.69142 -22.74343 -22.20738 -20.68568 -20.39302 -19.90765 -18.34280 -17.71455 -17.63287 -16.99455 -16.80822 -16.56119 -16.10664 -15.87402 -15.72311 -15.36661 -15.28136 -14.65050 -14.59486 -14.08670 -13.86274 -13.62735 -13.49574 -13.29076 -13.14824 -13.10613 -12.91468 -12.85244 -12.79394 -12.66938 -12.49257 -12.37478 -12.33490 -12.21645 -11.96658 -11.90863 -11.80975 -11.75698 -11.38922 -11.22070 -10.80520 -10.67797 -10.51950 -10.40093 -9.52797 -8.65690 -7.77765 -5.25604 -0.67060 -0.06863 0.53335 1.37352 1.50785 1.55184 1.61604 1.91377 2.56299 2.87685 3.09265 3.34886 3.45961 3.69352 3.84912 3.89951 4.00410 4.04059 4.27997 4.31435 4.40026 4.44924 4.49743 4.51006 4.54525 4.61878 4.64990 4.71347 4.73391 4.79297 4.85020 4.89301 4.92683 5.00092 5.06878 5.13378 5.19462 5.26734 5.33176 5.36159 5.50420 5.58858 5.69809 5.78432 5.97165 6.16570 6.44371 6.56861 7.21407 7.87531 8.42038 9.25841 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.003033 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.817864 B = 9230.371884 C = 9639.489286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.398 6.398 3 C 0.198 3.802 4 C -0.160 4.160 5 C -0.165 4.165 6 C 0.293 3.707 7 N -0.495 5.495 8 S 0.197 5.803 9 C 0.275 3.725 10 N -0.423 5.423 11 C 0.069 3.931 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.128 4.128 15 N -0.598 5.598 16 C -0.253 4.253 17 H 0.077 0.923 18 C -0.041 4.041 19 N -0.919 5.919 20 Si 0.953 3.047 21 H -0.292 1.292 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.202 3.798 25 H 0.078 0.922 26 C -0.128 4.128 27 C 0.039 3.961 28 N -0.543 5.543 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.247 0.753 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.031 0.969 47 H 0.092 0.908 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 8.352 -6.150 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.317 6.317 3 C 0.153 3.847 4 C -0.218 4.218 5 C -0.224 4.224 6 C 0.002 3.998 7 N -0.328 5.328 8 S 0.335 5.665 9 C -0.103 4.103 10 N -0.141 5.141 11 C -0.059 4.059 12 C 0.059 3.941 13 H 0.043 0.957 14 C -0.186 4.186 15 N -0.321 5.321 16 C -0.382 4.382 17 H 0.095 0.905 18 C -0.237 4.237 19 N -0.565 5.565 20 Si 0.783 3.217 21 H -0.219 1.219 22 H -0.224 1.224 23 H -0.199 1.199 24 C 0.095 3.905 25 H 0.095 0.905 26 C -0.187 4.187 27 C -0.090 4.090 28 N -0.272 5.272 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.110 0.890 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.855 8.220 -7.110 20.902 hybrid contribution 0.864 0.088 0.933 1.274 sum -16.991 8.308 -6.177 19.897 Atomic orbital electron populations 1.23092 0.78685 1.04116 1.01787 1.88025 1.22151 1.26166 1.95362 1.19854 0.81824 0.84944 0.98033 1.22250 1.03109 1.00790 0.95614 1.22336 1.03693 1.00293 0.96053 1.23278 0.99219 0.91153 0.86165 1.77377 0.98551 1.29689 1.27185 1.84978 1.12891 1.41547 1.27040 1.27424 0.92522 0.91751 0.98647 1.57891 1.04948 1.47616 1.03687 1.22854 1.01854 0.98408 0.82813 1.20670 0.84779 0.95608 0.93058 0.95743 1.21694 1.01459 1.00978 0.94442 1.44532 1.01367 1.81721 1.04473 1.19448 0.88584 1.23094 1.07116 0.90523 1.25617 1.00822 0.96473 1.00831 1.70174 1.21185 1.25280 1.39826 0.85518 0.80113 0.78528 0.77579 1.21933 1.22403 1.19872 1.20252 0.96151 0.91769 0.82347 0.90452 1.21860 0.99127 0.98647 0.99066 1.23235 0.83748 1.01096 1.00882 1.67319 1.04987 1.25406 1.29512 0.91941 0.88658 0.91990 0.88555 0.90589 0.92554 0.92036 0.90966 0.88148 0.92874 0.88646 0.92634 0.90639 0.93085 0.94369 0.94114 0.93099 0.94982 0.88980 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.21 113.37 1.16 1.44 16 2 O -0.40 -10.07 10.32 -148.98 -1.54 -11.61 16 3 C 0.20 4.65 1.05 -11.54 -0.01 4.63 16 4 C -0.16 -2.95 7.52 71.98 0.54 -2.41 16 5 C -0.17 -3.07 8.22 71.98 0.59 -2.48 16 6 C 0.29 8.92 6.34 139.39 0.88 9.81 16 7 N -0.49 -15.14 11.01 -60.46 -0.67 -15.80 16 8 S 0.20 5.91 22.15 -56.49 -1.25 4.66 16 9 C 0.27 9.16 7.02 178.86 1.26 10.42 16 10 N -0.42 -14.78 4.19 -705.16 -2.95 -17.73 16 11 C 0.07 2.33 4.84 86.38 0.42 2.75 16 12 C 0.17 6.34 3.25 44.96 0.15 6.49 16 13 H 0.02 1.03 7.61 -2.39 -0.02 1.02 16 14 C -0.13 -4.26 7.95 71.98 0.57 -3.69 16 15 N -0.60 -26.97 2.72 -650.64 -1.77 -28.74 16 16 C -0.25 -12.49 8.72 84.03 0.73 -11.75 16 17 H 0.08 3.67 6.17 -2.91 -0.02 3.65 16 18 C -0.04 -2.12 4.92 84.86 0.42 -1.70 16 19 N -0.92 -49.70 9.81 21.65 0.21 -49.49 16 20 Si 0.95 42.32 29.59 68.60 2.03 44.35 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 C 0.20 8.73 2.34 44.96 0.11 8.83 16 25 H 0.08 3.80 6.25 -2.39 -0.01 3.78 16 26 C -0.13 -5.55 8.98 71.98 0.65 -4.90 16 27 C 0.04 1.37 4.15 86.38 0.36 1.73 16 28 N -0.54 -18.29 10.31 -200.04 -2.06 -20.35 16 29 H 0.06 0.70 6.42 -2.39 -0.02 0.68 16 30 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 0.72 6.42 -2.39 -0.02 0.70 16 32 H 0.10 1.16 6.54 -2.39 -0.02 1.14 16 33 H 0.08 1.39 8.03 -2.39 -0.02 1.37 16 34 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.23 6.54 -2.39 -0.02 1.21 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 3.03 7.89 -2.39 -0.02 3.01 16 40 H 0.05 1.86 7.33 -2.39 -0.02 1.84 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.85 7.78 -2.39 -0.02 1.83 16 43 H 0.25 13.20 8.32 -92.71 -0.77 12.43 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.05 2.54 6.78 -2.39 -0.02 2.52 16 46 H 0.03 1.36 7.06 -2.39 -0.02 1.34 16 47 H 0.09 2.98 7.52 -2.39 -0.02 2.96 16 48 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 Total: -1.00 -60.56 378.71 0.77 -59.79 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.96 Total: 15.76 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 7.81 Total: 19.16 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -7.24 Total: -132.12 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.54 Total: -11.61 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 5.91 SS G_CDS: -1.25 Total: 4.66 kcal Total: -60.56 0.77 -59.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.440 kcal (2) G-P(sol) polarization free energy of solvation -60.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds