Wall clock time and date at job start Wed Apr 1 2020 00:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.49257 * 2 1 4 4 C 1.53197 * 109.49672 * 120.09126 * 2 1 3 5 5 N 1.46924 * 108.77353 * 174.59025 * 4 2 1 6 6 C 1.36936 * 120.63036 * 126.37032 * 5 4 2 7 7 H 1.07991 * 120.00053 * 331.83561 * 6 5 4 8 8 C 1.38816 * 119.99928 * 151.83208 * 6 5 4 9 9 N 1.31613 * 120.00074 * 343.08306 * 8 6 5 10 10 Si 1.86799 * 120.00010 * 163.08191 * 8 6 5 11 11 H 1.48502 * 109.46707 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47226 * 119.99945 * 10 8 6 13 13 H 1.48495 * 109.47189 * 240.00307 * 10 8 6 14 14 C 1.46929 * 118.73816 * 306.39267 * 5 4 2 15 15 C 1.53168 * 108.76795 * 53.61013 * 14 5 4 16 16 C 1.53034 * 109.32858 * 305.35536 * 15 14 5 17 17 H 1.09000 * 109.46376 * 181.38770 * 16 15 14 18 18 N 1.46500 * 109.45905 * 301.36053 * 16 15 14 19 19 C 1.34782 * 119.99748 * 275.02625 * 18 16 15 20 20 O 1.21496 * 119.99838 * 0.02562 * 19 18 16 21 21 C 1.48284 * 120.00054 * 179.97438 * 19 18 16 22 22 C 1.40361 * 119.18697 * 180.02562 * 21 19 18 23 23 C 1.36557 * 119.82313 * 179.97438 * 22 21 19 24 24 C 1.40548 * 118.06053 * 0.02562 * 23 22 21 25 25 C 1.40522 * 122.20949 * 179.97438 * 24 23 22 26 26 C 1.36251 * 118.68609 * 180.02562 * 25 24 23 27 27 N 1.32589 * 121.80154 * 0.02806 * 26 25 24 28 28 C 1.31116 * 122.87865 * 0.23133 * 27 26 25 29 29 C 1.40864 * 119.95417 * 359.50140 * 28 27 26 30 30 N 1.31902 * 119.18414 * 0.02562 * 21 19 18 31 31 H 1.09009 * 109.46811 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47579 * 300.06630 * 1 2 3 33 33 H 1.09000 * 109.47398 * 60.07062 * 1 2 3 34 34 H 1.08992 * 109.58797 * 294.37988 * 4 2 1 35 35 H 1.08996 * 109.58098 * 54.80717 * 4 2 1 36 36 H 0.97001 * 120.00533 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.58571 * 173.39631 * 14 5 4 38 38 H 1.09001 * 109.58867 * 293.82051 * 14 5 4 39 39 H 1.08998 * 109.47700 * 185.40492 * 15 14 5 40 40 H 1.09000 * 109.49790 * 65.31951 * 15 14 5 41 41 H 0.96996 * 120.00342 * 95.02652 * 18 16 15 42 42 H 1.07999 * 120.09193 * 359.97438 * 22 21 19 43 43 H 1.08003 * 120.97155 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.65713 * 0.03136 * 25 24 23 45 45 H 1.08000 * 119.10205 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.02523 * 179.74710 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8293 1.1695 6 6 4.2935 -0.3788 2.1941 7 1 3.9499 0.4264 2.8263 8 6 5.5350 -0.9573 2.4201 9 7 5.8212 -2.1284 1.8922 10 14 6.7994 -0.0735 3.4734 11 1 6.2355 1.2166 3.9456 12 1 7.1470 -0.9191 4.6436 13 1 8.0206 0.1845 2.6689 14 6 4.1053 -1.4265 -0.0310 15 6 3.5709 -0.6946 -1.2658 16 6 2.0409 -0.7227 -1.2485 17 1 1.6584 -0.2238 -2.1390 18 7 1.5785 -2.1127 -1.2313 19 6 1.4499 -2.7945 -2.3868 20 8 1.7179 -2.2564 -3.4426 21 6 0.9824 -4.2016 -2.3693 22 6 0.8552 -4.8957 -3.5827 23 6 0.4263 -6.1922 -3.5817 24 6 0.1244 -6.7877 -2.3450 25 6 -0.3240 -8.1156 -2.2426 26 6 -0.5964 -8.6205 -1.0068 27 7 -0.4499 -7.8940 0.0926 28 6 -0.0411 -6.6484 0.0735 29 6 0.2737 -6.0302 -1.1525 30 7 0.6964 -4.7701 -1.2140 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3634 0.5127 -0.8906 34 1 1.7637 -0.1585 2.1388 35 1 1.6053 -1.7219 1.2976 36 1 6.6889 -2.5326 2.0498 37 1 5.1897 -1.3244 0.0136 38 1 3.8377 -2.4817 -0.0873 39 1 3.9337 -1.1891 -2.1668 40 1 3.9159 0.3393 -1.2535 41 1 1.3649 -2.5424 -0.3883 42 1 1.0958 -4.4058 -4.5146 43 1 0.3221 -6.7438 -4.5043 44 1 -0.4502 -8.7238 -3.1261 45 1 -0.9410 -9.6404 -0.9204 46 1 0.0580 -6.0979 0.9973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942487569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:57 Heat of formation + Delta-G solvation = 52.892675 kcal Electronic energy + Delta-G solvation = -29633.115706 eV Core-core repulsion = 25716.215622 eV Total energy + Delta-G solvation = -3916.900084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.51606 -39.92779 -38.33138 -37.34389 -34.40437 -34.03737 -32.52234 -31.79193 -31.15819 -30.75132 -29.82778 -26.22110 -25.72076 -25.09756 -24.47118 -22.96058 -22.23291 -21.24766 -20.96801 -18.84320 -18.57155 -18.16932 -17.63200 -16.72067 -16.30223 -15.51181 -15.25587 -15.10882 -14.84669 -14.67601 -14.51885 -14.35694 -13.91803 -13.74960 -13.58816 -13.31842 -13.26228 -13.03181 -12.67528 -12.51656 -12.36220 -12.08867 -11.47699 -11.35773 -11.14783 -11.08212 -10.84019 -10.70603 -10.56408 -10.32671 -10.20055 -10.04392 -9.80930 -9.73732 -9.65313 -9.58053 -9.41327 -8.79343 -8.59872 -8.45406 -6.66264 -5.78220 -3.21455 -0.20941 0.29243 1.50823 2.31474 3.18017 3.25950 3.37581 3.45725 3.47524 3.77424 3.86821 4.07210 4.17571 4.34772 4.44352 4.49396 4.62022 4.86199 5.00611 5.16826 5.23203 5.32725 5.36223 5.37655 5.45134 5.50864 5.56798 5.61844 5.81431 5.88138 5.99263 6.02638 6.09991 6.17163 6.25800 6.29648 6.35673 6.46269 6.61735 6.66957 6.76601 6.92588 6.95068 7.26418 7.37823 7.63051 7.68221 7.80495 7.82706 8.36888 8.44892 9.21217 9.84571 10.40896 11.29780 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012143 B = 0.003271 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.359156 B = 8558.756884 C = 9584.383583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.253 4.253 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.157 3.843 17 H 0.075 0.925 18 N -0.684 5.684 19 C 0.565 3.435 20 O -0.539 6.539 21 C 0.124 3.876 22 C -0.106 4.106 23 C -0.069 4.069 24 C -0.065 4.065 25 C -0.150 4.150 26 C 0.081 3.919 27 N -0.477 5.477 28 C 0.181 3.819 29 C 0.067 3.933 30 N -0.420 5.420 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.158 0.842 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.264 -8.932 -10.547 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 H 0.101 0.899 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.335 5.335 19 C 0.348 3.652 20 O -0.416 6.416 21 C -0.031 4.031 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.072 4.072 25 C -0.171 4.171 26 C -0.061 4.061 27 N -0.186 5.186 28 C 0.007 3.993 29 C -0.059 4.059 30 N -0.132 5.132 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.251 0.749 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.176 0.824 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.069 -8.730 -9.663 19.171 hybrid contribution 0.835 -0.046 -0.720 1.104 sum -13.235 -8.776 -10.383 18.973 Atomic orbital electron populations 1.21778 0.95724 1.01456 1.01105 1.21955 0.94608 1.00737 0.96648 0.89867 1.20922 0.86115 0.96267 0.94312 1.44062 0.99149 1.71540 1.16573 1.19204 0.98492 1.11892 1.08672 0.91637 1.25039 0.99942 0.95323 0.99202 1.70043 1.21999 1.14502 1.47912 0.86253 0.81735 0.79213 0.79740 1.20253 1.21768 1.21613 1.20720 0.99244 0.93001 0.82215 1.22577 0.93968 1.02087 1.00843 1.21010 0.95307 0.80098 0.98223 0.90654 1.46022 1.64354 1.14076 1.09001 1.17796 0.78494 0.84219 0.84705 1.90759 1.51347 1.68692 1.30768 1.21636 0.96815 0.95463 0.89181 1.21912 0.96589 0.94513 0.99708 1.21400 0.96261 0.94676 0.97178 1.19085 0.98284 0.95374 0.94499 1.21882 1.00894 0.94337 0.99952 1.22341 0.96183 0.99949 0.87646 1.67542 1.12396 1.06593 1.32077 1.23331 0.89912 0.89748 0.96323 1.19917 1.00469 0.90886 0.94647 1.67811 1.07723 1.09922 1.27769 0.92977 0.92656 0.93309 0.92434 0.96612 0.93728 0.89620 0.96321 0.92671 0.91578 0.74936 0.82684 0.83264 0.84018 0.82434 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.05 37.16 0.34 -1.57 16 2 C -0.12 -1.94 2.67 -90.50 -0.24 -2.18 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.15 2.97 5.50 -3.71 -0.02 2.95 16 5 N -0.59 -14.28 2.99 -172.33 -0.52 -14.79 16 6 C -0.25 -6.79 9.58 -15.06 -0.14 -6.94 16 7 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 8 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 9 N -0.90 -26.00 11.20 55.49 0.62 -25.38 16 10 Si 0.90 21.56 29.59 -169.99 -5.03 16.54 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.17 4.11 5.05 -3.72 -0.02 4.10 16 15 C -0.15 -3.04 5.77 -26.63 -0.15 -3.20 16 16 C 0.16 2.70 2.21 -67.89 -0.15 2.55 16 17 H 0.08 1.27 7.58 -51.93 -0.39 0.88 16 18 N -0.68 -11.33 3.58 -54.57 -0.20 -11.52 16 19 C 0.56 9.28 7.78 -12.13 -0.09 9.19 16 20 O -0.54 -9.82 15.94 5.37 0.09 -9.74 16 21 C 0.12 1.78 6.75 -82.91 -0.56 1.22 16 22 C -0.11 -1.21 9.54 -39.39 -0.38 -1.59 16 23 C -0.07 -0.64 9.93 -39.32 -0.39 -1.03 16 24 C -0.07 -0.70 5.75 -106.70 -0.61 -1.31 16 25 C -0.15 -1.24 9.88 -39.44 -0.39 -1.63 16 26 C 0.08 0.73 11.07 -17.94 -0.20 0.53 16 27 N -0.48 -5.50 10.28 -13.05 -0.13 -5.63 16 28 C 0.18 2.16 11.26 -16.86 -0.19 1.97 16 29 C 0.07 0.85 6.62 -84.88 -0.56 0.29 16 30 N -0.42 -6.02 9.49 -7.51 -0.07 -6.09 16 31 H 0.05 0.69 7.54 -51.92 -0.39 0.30 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 35 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 38 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.41 6.92 6.03 -40.82 -0.25 6.67 16 42 H 0.16 1.60 7.60 -52.49 -0.40 1.20 16 43 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.77 373.97 -9.71 -41.48 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.26 Total: 6.17 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -3.85 Total: 3.34 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.30 Total: -63.42 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.77 -9.71 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942487569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.372 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds