Wall clock time and date at job start Wed Apr 1 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.50370 * 2 1 4 4 C 1.53197 * 109.50187 * 120.06240 * 2 1 3 5 5 N 1.46930 * 108.77356 * 174.55155 * 4 2 1 6 6 C 1.36935 * 120.59901 * 126.42805 * 5 4 2 7 7 H 1.08004 * 119.99619 * 208.52656 * 6 5 4 8 8 C 1.38812 * 120.00622 * 28.53000 * 6 5 4 9 9 N 1.31620 * 119.99614 * 16.29882 * 8 6 5 10 10 Si 1.86800 * 120.00150 * 196.30260 * 8 6 5 11 11 H 1.48501 * 109.47228 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46961 * 120.00169 * 10 8 6 13 13 H 1.48500 * 109.46908 * 239.99638 * 10 8 6 14 14 C 1.46921 * 118.76552 * 306.44656 * 5 4 2 15 15 C 1.53182 * 108.77740 * 53.59044 * 14 5 4 16 16 C 1.53042 * 109.49984 * 239.93379 * 2 1 3 17 17 H 1.09001 * 109.45881 * 58.67612 * 16 2 1 18 18 N 1.46495 * 109.45947 * 298.70595 * 16 2 1 19 19 C 1.34776 * 119.99899 * 154.99864 * 18 16 2 20 20 O 1.21528 * 120.00344 * 359.97438 * 19 18 16 21 21 C 1.48009 * 119.99926 * 180.02562 * 19 18 16 22 22 C 1.38894 * 121.16693 * 354.56817 * 21 19 18 23 23 C 1.39348 * 119.66892 * 179.97438 * 22 21 19 24 24 N 1.31104 * 121.90548 * 0.02562 * 23 22 21 25 25 C 1.33288 * 121.61608 * 359.97438 * 24 23 22 26 26 C 1.40830 * 121.91629 * 180.02562 * 25 24 23 27 27 C 1.36176 * 118.76760 * 179.21286 * 26 25 24 28 28 N 1.32537 * 121.95598 * 0.78312 * 27 26 25 29 29 C 1.31335 * 122.60692 * 359.47157 * 28 27 26 30 30 C 1.40086 * 119.87521 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47329 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46658 * 59.99724 * 1 2 3 33 33 H 1.09001 * 109.47036 * 300.00448 * 1 2 3 34 34 H 1.08998 * 109.58160 * 294.37891 * 4 2 1 35 35 H 1.09007 * 109.57960 * 54.79762 * 4 2 1 36 36 H 0.97000 * 120.00056 * 179.97438 * 9 8 6 37 37 H 1.09005 * 109.58530 * 293.79808 * 14 5 4 38 38 H 1.09007 * 109.58446 * 173.37826 * 14 5 4 39 39 H 1.09004 * 109.50170 * 185.41391 * 15 14 5 40 40 H 1.09001 * 109.52676 * 65.32971 * 15 14 5 41 41 H 0.97006 * 119.99986 * 334.99653 * 18 16 2 42 42 H 1.07997 * 120.16650 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.04804 * 180.02562 * 23 22 21 44 44 H 1.07994 * 120.61674 * 359.95599 * 26 25 24 45 45 H 1.07991 * 119.02166 * 180.27853 * 27 26 25 46 46 H 1.07997 * 120.06635 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 3.5046 -0.8294 1.1693 6 6 4.2935 -0.3795 2.1941 7 1 5.2942 -0.0274 1.9908 8 6 3.8074 -0.3758 3.4943 9 7 2.7407 -1.0838 3.8000 10 14 4.6669 0.6338 4.8101 11 1 5.8332 1.3336 4.2141 12 1 3.7193 1.6338 5.3645 13 1 5.1317 -0.2638 5.8980 14 6 4.1053 -1.4266 -0.0312 15 6 3.5709 -0.6947 -1.2661 16 6 2.0408 -0.7228 -1.2485 17 1 1.6584 -0.2238 -2.1390 18 7 1.5783 -2.1127 -1.2314 19 6 1.4502 -2.7946 -2.3868 20 8 1.7179 -2.2563 -3.4430 21 6 0.9824 -4.1987 -2.3695 22 6 0.7756 -4.8728 -1.1729 23 6 0.3342 -6.1943 -1.1930 24 7 0.1051 -6.8313 -2.3158 25 6 0.2825 -6.2459 -3.5000 26 6 0.0378 -6.9239 -4.7099 27 6 0.2247 -6.2587 -5.8833 28 7 0.6433 -5.0017 -5.9181 29 6 0.8960 -4.3096 -4.8309 30 6 0.7240 -4.8998 -3.5722 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.7638 -0.1572 2.1389 35 1 1.6052 -1.7212 1.2985 36 1 2.4011 -1.0816 4.7086 37 1 3.8375 -2.4818 -0.0874 38 1 5.1896 -1.3246 0.0134 39 1 3.9334 -1.1891 -2.1674 40 1 3.9159 0.3392 -1.2545 41 1 1.3643 -2.5423 -0.3884 42 1 0.9552 -4.3749 -0.2315 43 1 0.1763 -6.7088 -0.2566 44 1 -0.3034 -7.9485 -4.7069 45 1 0.0339 -6.7733 -6.8134 46 1 1.2351 -3.2870 -4.9071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942530624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:12 Heat of formation + Delta-G solvation = 56.483398 kcal Electronic energy + Delta-G solvation = -29834.751292 eV Core-core repulsion = 25918.006914 eV Total energy + Delta-G solvation = -3916.744378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.57494 -39.94328 -38.21079 -37.80658 -34.45581 -33.82279 -32.43496 -31.92828 -31.74735 -30.61819 -29.55078 -26.22262 -25.78731 -25.14679 -24.36152 -23.58419 -22.17417 -21.29393 -20.82418 -18.97776 -18.67522 -18.23455 -17.37876 -16.83819 -16.29510 -15.73213 -15.41754 -15.00315 -14.96410 -14.79957 -14.56335 -14.41347 -13.98513 -13.79320 -13.55791 -13.43903 -13.17187 -13.15611 -12.96402 -12.72425 -12.23341 -12.13135 -11.57253 -11.33324 -11.14146 -11.05699 -10.82365 -10.80909 -10.49664 -10.44614 -10.26337 -10.06800 -9.95536 -9.86545 -9.57346 -9.54753 -9.40722 -8.93248 -8.68922 -8.57838 -6.78857 -5.91216 -3.33961 -0.26768 0.44278 1.35083 2.61174 3.02967 3.04765 3.29822 3.38851 3.40567 3.87417 3.87884 4.20174 4.32476 4.35445 4.40527 4.47625 4.49114 4.95180 5.08528 5.10028 5.20321 5.25280 5.32199 5.34496 5.43389 5.53224 5.55131 5.66685 5.70591 5.71818 5.95742 6.01498 6.05887 6.14415 6.21472 6.32583 6.37529 6.41772 6.46762 6.52875 6.67022 6.77916 6.85018 7.15037 7.45540 7.46083 7.52143 7.70344 7.75966 8.13209 8.33216 9.09347 9.71843 10.27824 11.17330 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.002920 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.850765 B = 9586.596440 C =10164.036858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 H 0.081 0.919 4 C 0.178 3.822 5 N -0.592 5.592 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.903 5.903 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.147 4.147 16 C 0.158 3.842 17 H 0.079 0.921 18 N -0.694 5.694 19 C 0.556 3.444 20 O -0.533 6.533 21 C -0.042 4.042 22 C -0.142 4.142 23 C 0.153 3.847 24 N -0.466 5.466 25 C 0.152 3.848 26 C -0.151 4.151 27 C 0.091 3.909 28 N -0.491 5.491 29 C 0.163 3.837 30 C -0.134 4.134 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.014 0.986 36 H 0.254 0.746 37 H 0.016 0.984 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.151 0.849 43 H 0.173 0.827 44 H 0.146 0.854 45 H 0.159 0.841 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -7.588 -11.708 15.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 H 0.100 0.900 4 C 0.052 3.948 5 N -0.314 5.314 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.548 5.548 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.217 1.217 14 C 0.020 3.980 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.097 0.903 18 N -0.345 5.345 19 C 0.342 3.658 20 O -0.412 6.412 21 C -0.055 4.055 22 C -0.163 4.163 23 C -0.021 4.021 24 N -0.174 5.174 25 C 0.026 3.974 26 C -0.172 4.172 27 C -0.053 4.053 28 N -0.199 5.199 29 C -0.009 4.009 30 C -0.139 4.139 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.243 0.757 42 H 0.169 0.831 43 H 0.190 0.810 44 H 0.163 0.837 45 H 0.176 0.824 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.341 -7.811 -13.251 17.044 hybrid contribution 0.449 0.538 2.177 2.287 sum -6.893 -7.274 -11.074 14.934 Atomic orbital electron populations 1.21735 0.95762 1.01187 1.01122 1.22165 0.94808 1.00969 0.97009 0.90028 1.20797 0.83244 0.96423 0.94320 1.44060 1.01578 1.69515 1.16245 1.19224 0.98170 1.35153 0.85607 0.91629 1.25037 0.98460 0.98934 0.97043 1.69999 1.25511 1.40508 1.18769 0.86230 0.79010 0.79840 0.81736 1.20251 1.21526 1.21716 1.20871 0.96736 0.93955 0.86388 1.22403 0.94659 1.02064 0.99537 1.21037 0.94621 0.79784 0.99066 0.90343 1.46124 1.65296 1.14652 1.08397 1.17981 0.78305 0.84868 0.84656 1.90572 1.51241 1.69343 1.30062 1.20451 0.97318 0.94621 0.93126 1.22634 0.98531 0.96433 0.98691 1.23173 0.91013 0.91099 0.96812 1.67878 1.14740 1.37191 0.97640 1.18927 0.95508 0.90038 0.92931 1.21690 1.02946 1.01755 0.90775 1.22395 0.94387 0.90658 0.97872 1.67751 1.11675 1.07959 1.32492 1.24495 0.89638 1.01311 0.85431 1.19677 1.03192 0.95434 0.95609 0.93309 0.93541 0.92426 0.88959 0.96851 0.93642 0.96661 0.92749 0.92367 0.91084 0.75714 0.83128 0.81009 0.83656 0.82411 0.78319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.05 37.16 0.34 -1.61 16 2 C -0.13 -2.10 2.67 -90.50 -0.24 -2.34 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.18 3.64 4.28 -3.71 -0.02 3.63 16 5 N -0.59 -13.32 2.99 -172.31 -0.52 -13.84 16 6 C -0.25 -6.44 9.58 -15.06 -0.14 -6.58 16 7 H 0.07 1.68 7.88 -52.48 -0.41 1.27 16 8 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 9 N -0.90 -24.14 11.18 55.49 0.62 -23.52 16 10 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.15 2.84 6.26 -3.72 -0.02 2.82 16 15 C -0.15 -2.43 5.77 -26.61 -0.15 -2.58 16 16 C 0.16 2.44 2.21 -67.89 -0.15 2.29 16 17 H 0.08 1.21 7.58 -51.93 -0.39 0.81 16 18 N -0.69 -9.77 3.56 -54.66 -0.19 -9.97 16 19 C 0.56 7.96 7.73 -12.25 -0.09 7.87 16 20 O -0.53 -8.64 13.27 5.34 0.07 -8.57 16 21 C -0.04 -0.54 5.94 -104.37 -0.62 -1.16 16 22 C -0.14 -1.53 9.60 -38.93 -0.37 -1.90 16 23 C 0.15 1.55 11.14 -17.45 -0.19 1.35 16 24 N -0.47 -5.68 10.33 -10.95 -0.11 -5.80 16 25 C 0.15 1.96 6.63 -84.88 -0.56 1.40 16 26 C -0.15 -1.64 10.08 -39.34 -0.40 -2.03 16 27 C 0.09 0.98 11.06 -17.99 -0.20 0.78 16 28 N -0.49 -6.52 10.31 -13.24 -0.14 -6.66 16 29 C 0.16 2.26 10.52 -17.07 -0.18 2.08 16 30 C -0.13 -1.82 5.77 -106.55 -0.61 -2.44 16 31 H 0.05 0.64 7.53 -51.93 -0.39 0.25 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 35 H 0.01 0.28 6.64 -51.92 -0.34 -0.07 16 36 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.02 0.30 7.74 -51.93 -0.40 -0.10 16 38 H 0.05 1.07 7.93 -51.92 -0.41 0.66 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.40 5.52 4.91 -40.82 -0.20 5.32 16 42 H 0.15 1.39 6.55 -52.49 -0.34 1.05 16 43 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.20 2.90 5.08 -52.49 -0.27 2.63 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -29.59 366.86 -9.48 -39.07 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.00 Total: 6.60 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.71 Total: 1.57 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.34 Total: -59.79 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.07 Total: -8.57 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.59 -9.48 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942530624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.554 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds