Wall clock time and date at job start Wed Apr 1 2020 00:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49536 * 2 1 4 4 C 1.53191 * 109.49710 * 239.90273 * 2 1 3 5 5 N 1.46930 * 108.77317 * 185.41249 * 4 2 1 6 6 C 1.36932 * 120.62935 * 233.62656 * 5 4 2 7 7 H 1.08000 * 120.00026 * 148.42968 * 6 5 4 8 8 C 1.38815 * 120.00244 * 328.43307 * 6 5 4 9 9 N 1.31621 * 119.99747 * 344.21139 * 8 6 5 10 10 Si 1.86796 * 120.00171 * 164.21880 * 8 6 5 11 11 H 1.48498 * 109.47326 * 89.99429 * 10 8 6 12 12 H 1.48506 * 109.47117 * 210.00135 * 10 8 6 13 13 H 1.48504 * 109.47043 * 329.99565 * 10 8 6 14 14 C 1.46931 * 118.73804 * 53.61094 * 5 4 2 15 15 C 1.53186 * 108.77330 * 306.38592 * 14 5 4 16 16 C 1.53043 * 109.49864 * 120.05901 * 2 1 3 17 17 H 1.09000 * 109.45455 * 61.31295 * 16 2 1 18 18 N 1.46498 * 109.46460 * 301.33976 * 16 2 1 19 19 C 1.34771 * 120.00316 * 154.99784 * 18 16 2 20 20 O 1.21554 * 119.99832 * 359.97438 * 19 18 16 21 21 C 1.47864 * 120.00312 * 180.02562 * 19 18 16 22 22 C 1.38954 * 121.42149 * 6.11498 * 21 19 18 23 23 N 1.32582 * 120.34127 * 179.97438 * 22 21 19 24 24 N 1.28385 * 123.43112 * 0.06391 * 23 22 21 25 25 C 1.33459 * 121.85171 * 359.95395 * 24 23 22 26 26 C 1.40589 * 121.73718 * 180.02562 * 25 24 23 27 27 C 1.36116 * 119.61062 * 179.97438 * 26 25 24 28 28 C 1.39372 * 121.12865 * 359.97438 * 27 26 25 29 29 C 1.36334 * 120.88784 * 0.02562 * 28 27 26 30 30 C 1.39857 * 119.50063 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47131 * 299.93397 * 1 2 3 32 32 H 1.09000 * 109.47394 * 59.93465 * 1 2 3 33 33 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.58667 * 305.19571 * 4 2 1 35 35 H 1.08995 * 109.59092 * 65.48211 * 4 2 1 36 36 H 0.97001 * 119.99915 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.58714 * 66.17370 * 14 5 4 38 38 H 1.09003 * 109.58547 * 186.46070 * 14 5 4 39 39 H 1.09004 * 109.50019 * 294.68973 * 15 14 5 40 40 H 1.08998 * 109.49915 * 174.58853 * 15 14 5 41 41 H 0.97000 * 119.99654 * 335.00069 * 18 16 2 42 42 H 1.08003 * 119.83163 * 0.02562 * 22 21 19 43 43 H 1.07993 * 120.19381 * 0.02562 * 26 25 24 44 44 H 1.08003 * 119.43444 * 180.02562 * 27 26 25 45 45 H 1.08006 * 119.55008 * 180.02562 * 28 27 26 46 46 H 1.08004 * 120.24868 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8294 -1.1693 6 6 4.2936 -0.3791 -2.1939 7 1 5.2755 0.0189 -1.9846 8 6 3.8313 -0.4342 -3.5017 9 7 2.7931 -1.1855 -3.8016 10 14 4.6828 0.5579 -4.8359 11 1 5.7632 -0.2580 -5.4461 12 1 3.6957 0.9329 -5.8801 13 1 5.2664 1.7876 -4.2421 14 6 4.1053 -1.4267 0.0313 15 6 3.5709 -0.6946 1.2662 16 6 2.0408 -0.7226 1.2486 17 1 1.6969 -1.7569 1.2357 18 7 1.5266 -0.0522 2.4454 19 6 1.3985 -0.7370 3.5990 20 8 1.7093 -1.9112 3.6464 21 6 0.8789 -0.0605 4.8068 22 6 0.3968 1.2418 4.7567 23 7 -0.0647 1.8277 5.8529 24 7 -0.0973 1.2543 7.0011 25 6 0.3377 0.0049 7.1771 26 6 0.3004 -0.6208 8.4355 27 6 0.7550 -1.8972 8.5657 28 6 1.2582 -2.5980 7.4711 29 6 1.3098 -2.0234 6.2358 30 6 0.8520 -0.7128 6.0662 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6053 -1.7220 -1.2975 35 1 1.7616 -0.1599 -2.1390 36 1 2.4698 -1.2237 -4.7153 37 1 3.8375 -2.4817 0.0875 38 1 5.1898 -1.3268 -0.0145 39 1 3.9159 0.3393 1.2539 40 1 3.9334 -1.1890 2.1674 41 1 1.2782 0.8847 2.4074 42 1 0.3972 1.7792 3.8199 43 1 -0.0875 -0.0922 9.2936 44 1 0.7246 -2.3753 9.5336 45 1 1.6119 -3.6099 7.6033 46 1 1.7022 -2.5758 5.3947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943030757.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:47 Heat of formation + Delta-G solvation = 47.248099 kcal Electronic energy + Delta-G solvation = -29233.786483 eV Core-core repulsion = 25316.641632 eV Total energy + Delta-G solvation = -3917.144851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.66460 -41.03801 -39.25893 -38.88959 -36.26682 -34.98654 -33.97821 -33.51486 -32.73509 -31.69228 -30.90557 -27.63338 -27.54292 -26.37004 -25.46763 -24.38789 -23.44932 -22.52951 -21.98120 -20.98457 -19.69956 -19.35205 -19.01672 -18.43807 -17.30725 -16.76599 -16.70567 -16.63690 -16.22634 -15.94897 -15.79802 -15.57245 -15.35645 -14.95004 -14.69557 -14.60464 -14.57319 -14.16041 -13.56557 -13.53087 -13.45354 -13.20610 -12.93275 -12.89798 -12.86681 -12.55617 -12.49714 -12.11801 -12.03189 -11.91362 -11.84371 -11.76389 -11.62272 -11.50787 -11.23340 -10.59322 -10.57615 -10.47442 -10.17387 -9.47472 -8.66545 -7.89288 -5.38145 -1.46922 -0.50042 0.49008 1.46218 1.47114 1.48815 1.58247 1.79062 1.93944 2.50613 2.80974 2.82511 3.09045 3.23507 3.27674 3.30942 3.63305 3.66497 3.73988 3.89735 3.99012 4.09715 4.17152 4.19926 4.32852 4.36628 4.46722 4.56219 4.63770 4.69971 4.74628 4.83028 4.90147 4.95172 4.97385 5.02299 5.09430 5.12813 5.24965 5.29994 5.33220 5.33996 5.46653 5.47934 5.65884 5.70342 5.71248 6.32654 6.39954 6.97376 7.14387 7.36914 7.82590 8.37004 9.17449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.002442 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.667644 B =11463.481691 C =11959.485804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.077 0.923 4 C 0.191 3.809 5 N -0.609 5.609 6 C -0.266 4.266 7 H 0.065 0.935 8 C -0.044 4.044 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.269 1.269 14 C 0.145 3.855 15 C -0.127 4.127 16 C 0.170 3.830 17 H 0.066 0.934 18 N -0.693 5.693 19 C 0.567 3.433 20 O -0.551 6.551 21 C -0.120 4.120 22 C 0.054 3.946 23 N -0.247 5.247 24 N -0.203 5.203 25 C 0.043 3.957 26 C -0.085 4.085 27 C -0.083 4.083 28 C -0.074 4.074 29 C -0.138 4.138 30 C -0.037 4.037 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.044 0.956 34 H -0.006 1.006 35 H 0.056 0.944 36 H 0.251 0.749 37 H 0.008 0.992 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.413 0.587 42 H 0.204 0.796 43 H 0.167 0.833 44 H 0.180 0.820 45 H 0.165 0.835 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 1.585 24.410 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.096 0.904 4 C 0.065 3.935 5 N -0.332 5.332 6 C -0.397 4.397 7 H 0.082 0.918 8 C -0.240 4.240 9 N -0.578 5.578 10 Si 0.793 3.207 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.194 1.194 14 C 0.019 3.981 15 C -0.167 4.167 16 C 0.066 3.934 17 H 0.084 0.916 18 N -0.344 5.344 19 C 0.353 3.647 20 O -0.430 6.430 21 C -0.135 4.135 22 C -0.098 4.098 23 N -0.099 5.099 24 N -0.057 5.057 25 C -0.087 4.087 26 C -0.106 4.106 27 C -0.103 4.103 28 C -0.093 4.093 29 C -0.156 4.156 30 C -0.047 4.047 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.221 0.779 43 H 0.185 0.815 44 H 0.197 0.803 45 H 0.182 0.818 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.736 2.083 24.840 25.821 hybrid contribution 0.924 -0.621 -2.097 2.374 sum -5.812 1.462 22.743 23.520 Atomic orbital electron populations 1.21710 0.93560 1.01653 1.02394 1.21918 0.96502 1.00130 0.94333 0.90438 1.20539 0.82615 0.95633 0.94744 1.44314 1.02180 1.69863 1.16846 1.19442 1.00291 1.33842 0.86084 0.91767 1.25874 0.99429 0.99450 0.99291 1.70169 1.28687 1.40257 1.18671 0.85316 0.77518 0.78941 0.78877 1.21312 1.21780 1.19370 1.20960 0.96858 0.93922 0.86377 1.22213 0.95088 1.01388 0.97987 1.20773 0.93313 0.96441 0.82857 0.91555 1.45929 1.64427 1.15044 1.09024 1.17921 0.77921 0.86025 0.82865 1.90638 1.51367 1.16810 1.84232 1.21101 1.01878 0.96208 0.94320 1.24659 0.93141 0.91746 1.00301 1.72986 1.12111 1.29586 0.95193 1.73497 1.09313 1.07606 1.15269 1.20737 0.99199 0.92727 0.96038 1.21175 0.99129 0.95695 0.94595 1.21588 0.94494 0.93331 1.00928 1.21743 0.94567 1.01650 0.91389 1.21898 0.99568 0.93337 1.00845 1.18942 0.96935 0.96502 0.92294 0.90607 0.92376 0.93696 0.98742 0.92538 0.93996 0.97365 0.92459 0.91421 0.91749 0.74912 0.77898 0.81537 0.80273 0.81772 0.82765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.03 71.98 0.65 -3.06 16 2 C -0.11 -3.58 2.46 -10.72 -0.03 -3.61 16 3 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.19 8.75 4.56 86.36 0.39 9.14 16 5 N -0.61 -29.86 2.97 -699.09 -2.08 -31.94 16 6 C -0.27 -14.35 9.55 84.04 0.80 -13.55 16 7 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 8 C -0.04 -2.43 4.92 84.86 0.42 -2.01 16 9 N -0.93 -54.21 11.39 21.65 0.25 -53.97 16 10 Si 0.97 43.91 29.58 68.60 2.03 45.94 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 C 0.14 6.05 6.52 86.36 0.56 6.61 16 15 C -0.13 -4.24 5.65 30.67 0.17 -4.06 16 16 C 0.17 5.30 1.88 45.02 0.08 5.39 16 17 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 18 N -0.69 -16.50 4.32 -445.26 -1.93 -18.42 16 19 C 0.57 14.88 7.72 86.79 0.67 15.55 16 20 O -0.55 -17.74 13.33 -3.88 -0.05 -17.79 16 21 C -0.12 -2.80 5.95 -19.66 -0.12 -2.92 16 22 C 0.05 1.10 10.80 84.75 0.92 2.01 16 23 N -0.25 -5.97 11.47 -56.68 -0.65 -6.62 16 24 N -0.20 -4.97 11.52 -52.00 -0.60 -5.57 16 25 C 0.04 0.94 6.69 40.38 0.27 1.21 16 26 C -0.09 -1.20 10.01 22.35 0.22 -0.98 16 27 C -0.08 -0.81 9.94 22.05 0.22 -0.59 16 28 C -0.07 -0.98 9.96 22.10 0.22 -0.76 16 29 C -0.14 -2.92 9.28 22.22 0.21 -2.72 16 30 C -0.04 -0.88 5.77 -21.08 -0.12 -1.00 16 31 H 0.08 1.58 7.36 -2.39 -0.02 1.56 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.06 2.92 6.30 -2.39 -0.02 2.91 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.06 2.34 7.93 -2.39 -0.02 2.33 16 39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.41 7.22 6.50 -92.71 -0.60 6.62 16 42 H 0.20 2.59 6.56 -2.91 -0.02 2.57 16 43 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.18 0.28 8.06 -2.91 -0.02 0.25 16 45 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.16 3.88 5.14 -2.91 -0.01 3.87 16 Total: -1.00 -70.88 371.31 2.93 -67.95 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.41 Total: 15.77 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.54 Total: 4.65 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -5.01 Total: -116.51 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.05 Total: -17.79 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.88 2.93 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943030757.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.196 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds