Wall clock time and date at job start Tue Mar 31 2020 23:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70036 * 2 1 4 4 C 1.53198 * 109.58454 * 120.35140 * 2 1 3 5 5 C 1.53042 * 109.30782 * 174.42473 * 4 2 1 6 6 H 1.08996 * 109.46358 * 58.64277 * 5 4 2 7 7 N 1.46494 * 109.45813 * 178.61928 * 5 4 2 8 8 C 1.34783 * 120.00261 * 205.00105 * 7 5 4 9 9 O 1.21488 * 119.99551 * 359.97438 * 8 7 5 10 10 C 1.48374 * 120.00220 * 180.27175 * 8 7 5 11 11 C 1.40217 * 119.21959 * 179.72474 * 10 8 7 12 12 C 1.36634 * 119.90975 * 179.97438 * 11 10 8 13 13 C 1.40565 * 118.10852 * 359.97438 * 12 11 10 14 14 C 1.40398 * 122.06525 * 180.02562 * 13 12 11 15 15 N 1.31249 * 119.87245 * 179.97438 * 14 13 12 16 16 C 1.32596 * 122.68755 * 0.04737 * 15 14 13 17 17 C 1.36108 * 121.98754 * 359.95062 * 16 15 14 18 18 C 1.40941 * 118.77211 * 0.02562 * 17 16 15 19 19 N 1.31977 * 119.22023 * 359.45084 * 10 8 7 20 20 C 1.53036 * 109.53780 * 298.63301 * 5 4 2 21 21 C 1.53202 * 109.31168 * 61.36999 * 20 5 4 22 22 N 1.46922 * 109.58480 * 239.64241 * 2 1 3 23 23 C 1.36938 * 120.63224 * 6.58257 * 22 2 1 24 24 H 1.07995 * 120.00160 * 330.16560 * 23 22 2 25 25 C 1.38820 * 119.99707 * 150.16617 * 23 22 2 26 26 N 1.31621 * 119.99858 * 344.49709 * 25 23 22 27 27 Si 1.86800 * 119.99568 * 164.49627 * 25 23 22 28 28 H 1.48497 * 109.47059 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.46718 * 120.00090 * 27 25 23 30 30 H 1.48501 * 109.46931 * 239.99734 * 27 25 23 31 31 H 1.08998 * 109.47232 * 299.64474 * 1 2 3 32 32 H 1.08993 * 109.47267 * 59.64811 * 1 2 3 33 33 H 1.09003 * 109.47145 * 179.64518 * 1 2 3 34 34 H 1.08994 * 109.49514 * 54.47641 * 4 2 1 35 35 H 1.08996 * 109.52272 * 294.39197 * 4 2 1 36 36 H 0.97004 * 120.00421 * 24.99485 * 7 5 4 37 37 H 1.08000 * 120.04544 * 359.97438 * 11 10 8 38 38 H 1.07994 * 120.94744 * 179.97438 * 12 11 10 39 39 H 1.07997 * 120.06293 * 359.95323 * 14 13 12 40 40 H 1.08001 * 119.00684 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.61042 * 180.02562 * 17 16 15 42 42 H 1.08997 * 109.49946 * 181.31650 * 20 5 4 43 43 H 1.08996 * 109.50373 * 301.41871 * 20 5 4 44 44 H 1.08997 * 109.58569 * 185.57521 * 21 20 5 45 45 H 1.08992 * 109.70262 * 65.21880 * 21 20 5 46 46 H 0.96999 * 119.99361 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0652 -1.5156 2.3754 8 6 5.3294 -1.3020 2.7909 9 8 6.0564 -0.5560 2.1656 10 6 5.8354 -1.9830 4.0081 11 6 7.1552 -1.7534 4.4223 12 6 7.6356 -2.3728 5.5415 13 6 6.7726 -3.2301 6.2459 14 6 7.1793 -3.9081 7.4062 15 7 6.3375 -4.6982 8.0305 16 6 5.0947 -4.8943 7.6121 17 6 4.6039 -4.2841 6.4988 18 6 5.4466 -3.4189 5.7722 19 7 5.0309 -2.7863 4.6785 20 6 3.9569 -1.6656 -0.0633 21 6 3.4650 -0.9469 -1.3237 22 7 2.0225 -0.6996 -1.1944 23 6 1.1536 -1.1136 -2.1685 24 1 0.1398 -1.3810 -1.9096 25 6 1.5759 -1.1895 -3.4887 26 7 2.6864 -0.5883 -3.8600 27 14 0.5682 -2.1449 -4.7381 28 1 -0.6270 -2.7225 -4.0725 29 1 0.1354 -1.2324 -5.8267 30 1 1.3949 -3.2387 -5.3085 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6030 -1.7252 1.2914 35 1 1.7659 -0.1672 2.1371 36 1 3.4849 -2.1115 2.8745 37 1 7.7912 -1.0879 3.8575 38 1 8.6493 -2.2084 5.8754 39 1 8.1829 -3.7801 7.7839 40 1 4.4522 -5.5580 8.1717 41 1 3.5876 -4.4595 6.1783 42 1 5.0412 -1.7695 -0.1036 43 1 3.4984 -2.6527 -0.0051 44 1 3.6518 -1.5717 -2.1970 45 1 3.9900 0.0019 -1.4341 46 1 2.9813 -0.6411 -4.7826 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947741774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:32 Heat of formation + Delta-G solvation = 52.093074 kcal Electronic energy + Delta-G solvation = -28727.882027 eV Core-core repulsion = 24810.947270 eV Total energy + Delta-G solvation = -3916.934757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.66947 -39.89465 -38.31717 -37.47890 -34.76785 -34.06503 -32.50828 -32.13499 -31.17994 -30.85044 -29.49414 -26.55810 -26.06713 -24.83832 -24.42320 -23.12103 -22.20186 -21.46428 -20.17941 -19.52352 -18.94706 -18.22199 -17.64953 -16.48503 -16.19644 -15.85918 -15.51144 -15.27108 -15.07345 -14.72879 -14.58575 -14.43383 -13.94225 -13.74078 -13.60787 -13.36401 -13.25750 -13.12056 -12.80977 -12.67095 -12.60662 -11.60571 -11.22602 -11.17652 -11.14127 -10.94189 -10.91617 -10.66774 -10.51691 -10.31133 -10.20865 -10.11540 -10.03761 -9.82202 -9.74986 -9.71869 -9.38749 -8.97563 -8.75321 -8.42970 -6.63433 -5.77078 -3.21201 -0.38047 0.12998 1.37808 2.16007 3.00832 3.08664 3.37388 3.45414 3.46952 3.61865 3.69455 3.87368 4.02944 4.21494 4.28339 4.46732 4.49406 4.75817 4.86944 5.12926 5.20626 5.26051 5.30066 5.37148 5.42249 5.46235 5.56631 5.60666 5.77070 5.88276 5.97316 6.13364 6.15472 6.22647 6.31931 6.38845 6.42121 6.50604 6.62643 6.77265 6.83651 7.02489 7.10263 7.14306 7.37410 7.42448 7.63039 7.69329 7.83709 8.20447 8.47603 9.22802 9.86290 10.43645 11.31742 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020210 B = 0.002290 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.138836 B =12224.342610 C =12580.122463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.148 3.852 6 H 0.084 0.916 7 N -0.698 5.698 8 C 0.560 3.440 9 O -0.525 6.525 10 C 0.147 3.853 11 C -0.130 4.130 12 C -0.038 4.038 13 C -0.157 4.157 14 C 0.160 3.840 15 N -0.485 5.485 16 C 0.087 3.913 17 C -0.134 4.134 18 C 0.152 3.848 19 N -0.449 5.449 20 C -0.147 4.147 21 C 0.176 3.824 22 N -0.587 5.587 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.406 0.594 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 -5.472 22.909 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.045 3.955 6 H 0.102 0.898 7 N -0.347 5.347 8 C 0.343 3.657 9 O -0.400 6.400 10 C -0.008 4.008 11 C -0.151 4.151 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.014 4.014 15 N -0.193 5.193 16 C -0.057 4.057 17 C -0.154 4.154 18 C 0.024 3.976 19 N -0.160 5.160 20 C -0.187 4.187 21 C 0.049 3.951 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.196 4.196 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.216 1.216 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.241 0.759 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.040 0.960 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.399 -5.608 22.790 24.608 hybrid contribution -0.120 -0.272 -0.955 1.000 sum 7.280 -5.880 21.835 23.756 Atomic orbital electron populations 1.21787 0.95704 1.01470 1.00306 1.20360 0.93120 0.93563 0.86548 0.95488 1.22391 0.93394 1.01840 0.99776 1.21174 0.94570 0.96810 0.82937 0.89761 1.46234 1.12565 1.47383 1.28518 1.17893 0.82926 0.81722 0.83172 1.90813 1.56462 1.37004 1.55770 1.21784 0.91391 0.93085 0.94545 1.21883 0.95800 1.00310 0.97105 1.21466 0.99698 0.92435 0.93012 1.19961 0.95911 1.01069 0.99138 1.23258 0.99090 0.89728 0.89329 1.67497 1.03973 1.15872 1.31912 1.22291 0.91868 0.97519 0.93977 1.21825 1.01261 0.96623 0.95714 1.18894 0.91380 0.95256 0.92025 1.67897 1.35774 1.06450 1.05912 1.22584 0.99786 0.99676 0.96662 1.20733 0.83309 0.97312 0.93729 1.44169 1.02962 1.64885 1.19069 1.19198 0.95192 1.37546 0.86061 0.91212 1.25118 0.97905 0.99578 0.97028 1.70033 1.24127 1.43808 1.16631 0.86266 0.79611 0.79605 0.81544 1.20278 1.21774 1.21649 0.94299 0.91848 0.92738 0.91660 0.92580 0.75866 0.82513 0.82877 0.81391 0.82110 0.83249 0.92833 0.92525 0.89339 0.96040 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.17 16 2 C 0.17 3.46 3.50 -67.60 -0.24 3.22 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.25 4.84 -26.61 -0.13 -2.38 16 5 C 0.15 2.58 2.41 -67.89 -0.16 2.41 16 6 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 7 N -0.70 -10.38 5.06 -54.55 -0.28 -10.66 16 8 C 0.56 8.54 7.78 -12.08 -0.09 8.45 16 9 O -0.53 -9.49 15.94 5.38 0.09 -9.40 16 10 C 0.15 1.85 6.75 -82.89 -0.56 1.29 16 11 C -0.13 -1.30 9.54 -39.42 -0.38 -1.68 16 12 C -0.04 -0.28 9.92 -39.28 -0.39 -0.67 16 13 C -0.16 -1.37 5.75 -106.74 -0.61 -1.99 16 14 C 0.16 1.17 11.05 -16.99 -0.19 0.98 16 15 N -0.48 -4.26 10.30 -13.18 -0.14 -4.39 16 16 C 0.09 0.68 11.06 -17.99 -0.20 0.48 16 17 C -0.13 -1.16 10.08 -39.32 -0.40 -1.56 16 18 C 0.15 1.62 6.63 -84.86 -0.56 1.06 16 19 N -0.45 -5.41 9.50 -7.49 -0.07 -5.49 16 20 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 21 C 0.18 4.20 5.28 -3.70 -0.02 4.18 16 22 N -0.59 -14.26 2.99 -164.77 -0.49 -14.75 16 23 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 24 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 25 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 26 N -0.90 -26.04 11.23 55.49 0.62 -25.42 16 27 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.25 7.67 -51.93 -0.40 0.86 16 33 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 5.36 7.91 -40.82 -0.32 5.04 16 37 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 38 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -32.25 375.69 -9.96 -42.20 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.33 Total: 3.96 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -4.00 Total: 1.81 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.35 Total: -60.70 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.25 -9.96 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947741774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.298 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds