Wall clock time and date at job start Tue Mar 31 2020 23:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.70121 * 2 1 4 4 C 1.53197 * 109.58532 * 239.64933 * 2 1 3 5 5 C 1.53037 * 109.30969 * 185.57660 * 4 2 1 6 6 H 1.09001 * 109.45988 * 301.35126 * 5 4 2 7 7 N 1.46507 * 109.45956 * 181.38632 * 5 4 2 8 8 C 1.34768 * 120.00129 * 154.99963 * 7 5 4 9 9 O 1.21545 * 120.00035 * 359.97438 * 8 7 5 10 10 C 1.47865 * 120.00156 * 180.02562 * 8 7 5 11 11 C 1.38957 * 121.42151 * 354.58273 * 10 8 7 12 12 N 1.32580 * 120.34014 * 179.97438 * 11 10 8 13 13 N 1.28379 * 123.43359 * 0.02562 * 12 11 10 14 14 C 1.33464 * 121.85703 * 0.02562 * 13 12 11 15 15 C 1.40585 * 121.74953 * 179.97438 * 14 13 12 16 16 C 1.36112 * 119.61415 * 180.02562 * 15 14 13 17 17 C 1.39376 * 121.13222 * 0.02562 * 16 15 14 18 18 C 1.36343 * 120.88301 * 359.97438 * 17 16 15 19 19 C 1.39853 * 119.49982 * 0.02562 * 18 17 16 20 20 C 1.53033 * 109.54306 * 61.36367 * 5 4 2 21 21 C 1.53200 * 109.31223 * 298.63583 * 20 5 4 22 22 N 1.46920 * 109.58999 * 120.35382 * 2 1 3 23 23 C 1.36934 * 120.63152 * 353.42621 * 22 2 1 24 24 H 1.08005 * 120.00245 * 29.95438 * 23 22 2 25 25 C 1.38814 * 119.99782 * 209.95726 * 23 22 2 26 26 N 1.31611 * 120.00364 * 14.78498 * 25 23 22 27 27 Si 1.86804 * 119.99911 * 194.78299 * 25 23 22 28 28 H 1.48499 * 109.47056 * 59.99562 * 27 25 23 29 29 H 1.48497 * 109.47171 * 180.02562 * 27 25 23 30 30 H 1.48508 * 109.47047 * 299.99989 * 27 25 23 31 31 H 1.09008 * 109.47039 * 180.35374 * 1 2 3 32 32 H 1.09005 * 109.46912 * 300.34953 * 1 2 3 33 33 H 1.08993 * 109.47663 * 60.35502 * 1 2 3 34 34 H 1.08994 * 109.49761 * 65.62509 * 4 2 1 35 35 H 1.09002 * 109.49431 * 305.52733 * 4 2 1 36 36 H 0.97000 * 119.99197 * 334.99896 * 7 5 4 37 37 H 1.07998 * 119.82697 * 359.97438 * 11 10 8 38 38 H 1.08000 * 120.19144 * 0.02562 * 15 14 13 39 39 H 1.07999 * 119.43799 * 180.27338 * 16 15 14 40 40 H 1.07995 * 119.55457 * 180.02562 * 17 16 15 41 41 H 1.08000 * 120.24851 * 179.97438 * 18 17 16 42 42 H 1.09000 * 109.49863 * 58.58187 * 20 5 4 43 43 H 1.09000 * 109.50365 * 178.68434 * 20 5 4 44 44 H 1.09002 * 109.58123 * 294.84249 * 21 20 5 45 45 H 1.09000 * 109.70467 * 174.49357 * 21 20 5 46 46 H 0.96999 * 120.00851 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1702 6 1 4.0060 0.1475 -1.0992 7 7 4.0652 -1.5155 -2.3756 8 6 5.3294 -1.3019 -2.7909 9 8 6.0564 -0.5549 -2.1658 10 6 5.8315 -1.9753 -4.0078 11 6 5.0654 -2.9180 -4.6825 12 7 5.5368 -3.5084 -5.7720 13 7 6.6958 -3.2609 -6.2655 14 6 7.5247 -2.3761 -5.7074 15 6 8.7937 -2.1071 -6.2495 16 6 9.6043 -1.1965 -5.6443 17 6 9.1988 -0.5236 -4.4930 18 6 7.9753 -0.7588 -3.9392 19 6 7.1169 -1.6882 -4.5351 20 6 3.9570 -1.6656 0.0633 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6995 1.1944 23 6 1.1538 -1.1136 2.1685 24 1 0.1405 -1.3830 1.9093 25 6 1.5754 -1.1870 3.4890 26 7 2.6918 -0.5953 3.8573 27 14 0.5579 -2.1255 4.7435 28 1 0.4421 -3.5453 4.3243 29 1 1.2192 -2.0530 6.0711 30 1 -0.7968 -1.5235 4.8322 31 1 -0.3633 -1.0277 0.0063 32 1 -0.3633 0.5193 0.8869 33 1 -0.3634 0.5083 -0.8931 34 1 1.7660 -0.1667 -2.1368 35 1 1.6029 -1.7252 -1.2914 36 1 3.4848 -2.1114 -2.8746 37 1 4.0810 -3.1710 -4.3176 38 1 9.1234 -2.6201 -7.1408 39 1 10.5768 -0.9888 -6.0656 40 1 9.8624 0.1942 -4.0340 41 1 7.6718 -0.2318 -3.0467 42 1 3.4984 -2.6527 0.0051 43 1 5.0413 -1.7694 0.1035 44 1 3.9904 0.0021 1.4316 45 1 3.6522 -1.5696 2.1985 46 1 2.9867 -0.6469 4.7799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947750550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:03 Heat of formation + Delta-G solvation = 69.937143 kcal Electronic energy + Delta-G solvation = -29084.458953 eV Core-core repulsion = 25168.297973 eV Total energy + Delta-G solvation = -3916.160980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.80628 -39.80113 -38.18762 -37.77649 -34.86783 -34.03607 -32.50376 -31.95816 -31.56520 -30.59276 -29.49709 -26.63292 -26.12675 -24.78556 -24.67472 -23.25892 -22.05712 -21.42780 -20.42698 -19.45496 -18.91134 -18.45550 -17.86272 -16.40169 -16.05180 -15.85345 -15.66530 -15.49419 -15.22249 -14.78521 -14.67943 -14.10859 -13.99868 -13.78267 -13.58937 -13.35632 -12.89294 -12.81869 -12.79443 -12.70953 -12.20768 -11.66436 -11.30922 -11.29765 -11.12228 -11.07311 -10.97023 -10.93453 -10.70492 -10.63933 -10.40123 -10.22220 -10.10668 -9.82571 -9.73802 -9.72480 -9.42600 -8.97140 -8.69503 -8.47589 -6.68565 -5.81338 -3.26367 -0.62834 0.26812 1.26229 2.33241 2.83613 2.86553 3.35710 3.42238 3.42374 3.60489 3.61438 3.91837 4.05680 4.18247 4.42081 4.45509 4.57259 4.74938 4.84926 5.06498 5.18789 5.21963 5.28984 5.37080 5.41241 5.47125 5.61910 5.67799 5.77398 5.87778 5.93427 6.00478 6.07854 6.14163 6.25185 6.28002 6.34537 6.38532 6.42581 6.54662 6.69685 6.73703 6.96762 7.04041 7.29399 7.38469 7.63267 7.78561 8.01535 8.23023 8.43084 9.18196 9.81344 10.38308 11.27415 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020997 B = 0.002443 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.215504 B =11456.999637 C =11924.524472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.150 3.850 6 H 0.086 0.914 7 N -0.709 5.709 8 C 0.561 3.439 9 O -0.521 6.521 10 C -0.103 4.103 11 C 0.045 3.955 12 N -0.224 5.224 13 N -0.189 5.189 14 C 0.059 3.941 15 C -0.083 4.083 16 C -0.095 4.095 17 C -0.094 4.094 18 C -0.105 4.105 19 C -0.025 4.025 20 C -0.148 4.148 21 C 0.175 3.825 22 N -0.587 5.587 23 C -0.253 4.253 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.176 0.824 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.175 0.825 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.090 0.910 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 -1.208 -19.054 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.047 3.953 6 H 0.104 0.896 7 N -0.358 5.358 8 C 0.346 3.654 9 O -0.398 6.398 10 C -0.119 4.119 11 C -0.108 4.108 12 N -0.076 5.076 13 N -0.044 5.044 14 C -0.070 4.070 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.035 4.035 20 C -0.188 4.188 21 C 0.049 3.951 22 N -0.310 5.310 23 C -0.383 4.383 24 H 0.087 0.913 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.731 3.269 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.193 0.807 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.192 0.808 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.108 0.892 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.830 -1.699 -19.525 21.926 hybrid contribution -0.495 0.118 1.568 1.649 sum 9.335 -1.581 -17.957 20.300 Atomic orbital electron populations 1.21791 0.95645 1.01499 1.00367 1.20352 0.93166 0.93548 0.86510 0.95487 1.22415 0.93260 1.01908 0.99964 1.21194 0.94608 0.96852 0.82611 0.89581 1.46299 1.12335 1.47988 1.29198 1.17766 0.82677 0.81664 0.83342 1.90642 1.55557 1.37173 1.56455 1.21280 0.94996 0.98406 0.97215 1.24305 1.00972 0.92884 0.92607 1.73029 1.06346 1.19235 1.08982 1.73593 0.97749 1.10037 1.23021 1.20384 0.96976 0.95854 0.93804 1.20775 0.90981 0.98197 1.00438 1.21140 1.00029 0.95118 0.95263 1.21324 0.96352 0.98631 0.95117 1.22000 0.92968 0.96075 1.01244 1.18719 0.93626 0.96510 0.94598 1.22599 0.99831 0.99691 0.96672 1.20743 0.83307 0.97315 0.93733 1.44150 1.02942 1.64836 1.19099 1.19111 0.95248 1.37894 0.86053 0.91283 1.25118 0.97829 0.99467 0.97054 1.69991 1.23720 1.44019 1.16918 0.86399 0.79672 0.80094 0.80739 1.21052 1.21669 1.20873 0.92714 0.91808 0.94277 0.92510 0.91595 0.76899 0.80725 0.83739 0.84492 0.84543 0.80846 0.92475 0.92792 0.96093 0.89187 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.95 37.16 0.30 -2.08 16 2 C 0.17 3.31 3.50 -67.60 -0.24 3.08 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -2.09 4.84 -26.61 -0.13 -2.22 16 5 C 0.15 2.39 2.41 -67.89 -0.16 2.22 16 6 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 7 N -0.71 -9.02 5.04 -54.71 -0.28 -9.29 16 8 C 0.56 7.76 7.73 -12.32 -0.10 7.66 16 9 O -0.52 -8.63 13.32 5.33 0.07 -8.56 16 10 C -0.10 -1.27 5.95 -104.31 -0.62 -1.89 16 11 C 0.04 0.49 10.81 -16.96 -0.18 0.31 16 12 N -0.22 -2.83 11.47 30.73 0.35 -2.48 16 13 N -0.19 -2.44 11.52 32.22 0.37 -2.06 16 14 C 0.06 0.69 6.69 -84.87 -0.57 0.13 16 15 C -0.08 -0.72 10.01 -39.46 -0.40 -1.11 16 16 C -0.09 -0.67 9.94 -39.92 -0.40 -1.07 16 17 C -0.09 -0.79 9.96 -39.84 -0.40 -1.18 16 18 C -0.10 -1.19 9.28 -39.66 -0.37 -1.56 16 19 C -0.03 -0.31 5.77 -106.50 -0.61 -0.93 16 20 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 21 C 0.18 4.05 5.28 -3.71 -0.02 4.03 16 22 N -0.59 -13.78 2.99 -164.77 -0.49 -14.27 16 23 C -0.25 -6.55 8.58 -15.06 -0.13 -6.67 16 24 H 0.07 1.73 6.23 -52.48 -0.33 1.41 16 25 C 0.00 0.11 4.96 -17.43 -0.09 0.03 16 26 N -0.90 -25.60 11.19 55.49 0.62 -24.97 16 27 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.05 0.96 7.40 -51.92 -0.38 0.58 16 32 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 3.85 6.79 -40.82 -0.28 3.57 16 37 H 0.18 1.32 6.55 -52.49 -0.34 0.98 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.17 2.23 5.13 -52.49 -0.27 1.96 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -31.19 368.67 -9.15 -40.34 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.07 Total: 3.79 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -4.26 Total: -4.17 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.58 Total: -53.09 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.07 Total: -8.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.19 -9.15 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947750550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.281 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds