Wall clock time and date at job start Wed Apr 1 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.44709 * 2 1 4 4 C 1.53044 * 109.45757 * 119.96450 * 2 1 3 5 5 C 1.53192 * 109.30945 * 181.38685 * 4 2 1 6 6 N 1.46924 * 108.77971 * 305.36602 * 5 4 2 7 7 C 1.36937 * 120.63228 * 233.61341 * 6 5 4 8 8 H 1.08000 * 119.99799 * 27.67662 * 7 6 5 9 9 C 1.38809 * 120.00082 * 207.67908 * 7 6 5 10 10 N 1.31615 * 120.00038 * 17.35400 * 9 7 6 11 11 Si 1.86804 * 119.99902 * 197.35142 * 9 7 6 12 12 H 1.48493 * 109.47043 * 90.00269 * 11 9 7 13 13 H 1.48498 * 109.46873 * 210.00240 * 11 9 7 14 14 H 1.48500 * 109.46933 * 329.99870 * 11 9 7 15 15 C 1.46932 * 118.76369 * 53.58632 * 6 5 4 16 16 C 1.53041 * 109.46047 * 240.03196 * 2 1 3 17 17 H 1.08994 * 109.49910 * 298.59440 * 16 2 1 18 18 N 1.46496 * 109.49514 * 58.66727 * 16 2 1 19 19 C 1.34784 * 119.99386 * 204.65746 * 18 16 2 20 20 O 1.21484 * 120.00277 * 0.27366 * 19 18 16 21 21 C 1.48349 * 119.99815 * 180.27143 * 19 18 16 22 22 C 1.40171 * 119.20638 * 179.72836 * 21 19 18 23 23 C 1.36624 * 119.71072 * 179.71982 * 22 21 19 24 24 C 1.40597 * 118.20445 * 0.54084 * 23 22 21 25 25 C 1.40737 * 121.37202 * 179.74765 * 24 23 22 26 26 C 1.36586 * 118.13025 * 179.97438 * 25 24 23 27 27 C 1.39428 * 119.84710 * 0.02562 * 26 25 24 28 28 N 1.31015 * 121.84364 * 0.02562 * 27 26 25 29 29 C 1.33867 * 121.42319 * 359.97438 * 28 27 26 30 30 N 1.31888 * 119.20595 * 0.02562 * 21 19 18 31 31 H 1.09002 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47426 * 299.97102 * 1 2 3 33 33 H 1.09002 * 109.47123 * 59.96646 * 1 2 3 34 34 H 1.09000 * 109.49540 * 301.33170 * 4 2 1 35 35 H 1.08991 * 109.49598 * 61.43515 * 4 2 1 36 36 H 1.09010 * 109.58943 * 65.15475 * 5 4 2 37 37 H 1.08999 * 109.58494 * 185.43414 * 5 4 2 38 38 H 0.96999 * 120.00178 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.61504 * 186.65047 * 15 6 5 40 40 H 1.08997 * 109.56449 * 66.21904 * 15 6 5 41 41 H 0.96997 * 120.00489 * 24.93035 * 18 16 2 42 42 H 1.08000 * 120.13952 * 0.02562 * 22 21 19 43 43 H 1.07996 * 120.89547 * 180.24908 * 23 22 21 44 44 H 1.07995 * 120.93721 * 359.97438 * 25 24 23 45 45 H 1.07995 * 120.07631 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.07948 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9761 -2.2736 0.0001 8 1 5.0090 -2.9659 0.8284 9 6 5.8544 -2.4227 -1.0643 10 7 6.0604 -1.4209 -1.8928 11 14 6.7441 -4.0451 -1.3210 12 1 5.9270 -4.9248 -2.1948 13 1 8.0587 -3.7923 -1.9636 14 1 6.9537 -4.7076 -0.0087 15 6 3.5714 -0.6892 -1.2645 16 6 2.0398 -0.7208 -1.2501 17 1 1.6974 -1.7555 -1.2385 18 7 1.5256 -0.0487 -2.4459 19 6 1.4037 -0.7305 -3.6021 20 8 1.7155 -1.9037 -3.6513 21 6 0.8886 -0.0484 -4.8146 22 6 0.7740 -0.7719 -6.0097 23 6 0.2955 -0.1555 -7.1312 24 6 -0.0573 1.2027 -7.0436 25 6 -0.5521 1.9045 -8.1587 26 6 -0.8748 3.2221 -7.9991 27 6 -0.7089 3.8314 -6.7560 28 7 -0.2470 3.1750 -5.7205 29 6 0.0887 1.8820 -5.8069 30 7 0.5552 1.2256 -4.7437 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5144 -0.8897 34 1 1.6572 -0.2206 2.1398 35 1 1.6977 -1.7555 1.2384 36 1 3.9142 0.3411 1.3674 37 1 3.9415 -1.2823 2.1000 38 1 6.6744 -1.5249 -2.6364 39 1 3.9412 -1.2856 -2.0987 40 1 3.9147 0.3401 -1.3680 41 1 1.2767 0.8880 -2.4066 42 1 1.0580 -1.8134 -6.0425 43 1 0.1954 -0.6956 -8.0610 44 1 -0.6732 1.4151 -9.1137 45 1 -1.2575 3.7905 -8.8337 46 1 -0.9675 4.8740 -6.6438 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966232059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:10 Heat of formation + Delta-G solvation = 34.012942 kcal Electronic energy + Delta-G solvation = -29345.471018 eV Core-core repulsion = 25427.752248 eV Total energy + Delta-G solvation = -3917.718771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.35898 -41.08458 -39.44680 -38.41985 -36.18143 -35.26618 -34.66585 -32.87753 -32.23589 -32.05605 -30.46708 -29.02910 -26.88003 -25.87786 -25.31779 -23.96447 -23.60744 -22.71873 -21.85718 -21.15023 -19.85784 -19.19115 -18.76366 -18.20743 -17.30208 -17.13358 -16.81259 -16.47937 -15.85866 -15.72826 -15.66457 -15.39412 -15.26780 -15.12580 -14.96221 -14.57717 -14.42703 -14.11060 -13.99061 -13.59235 -13.35544 -13.21831 -13.08587 -12.87985 -12.76482 -12.60561 -12.35719 -12.19889 -12.16097 -11.97492 -11.87112 -11.67506 -11.53334 -11.25020 -11.09986 -10.57673 -10.23193 -10.13163 -10.04924 -9.90362 -8.72484 -7.90193 -5.36691 -1.02210 -0.56429 0.82054 1.27442 1.40634 1.46037 1.52323 1.90451 2.13731 2.47208 2.54159 3.04071 3.25353 3.35390 3.42852 3.60649 3.70069 3.76048 3.80999 3.93251 3.96463 4.04487 4.12599 4.23851 4.43942 4.46014 4.52756 4.61938 4.64325 4.70910 4.80542 4.88702 4.93820 4.94550 5.08911 5.12575 5.14068 5.16697 5.19231 5.23034 5.36437 5.40266 5.50014 5.59247 5.60884 5.72468 6.11112 6.34000 6.47560 6.98953 7.07769 7.12469 7.81946 8.32595 9.15082 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.003140 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.932433 B = 8914.681209 C =10204.849383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.072 0.928 9 C -0.053 4.053 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.292 1.292 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.181 3.819 16 C 0.137 3.863 17 H 0.059 0.941 18 N -0.686 5.686 19 C 0.557 3.443 20 O -0.562 6.562 21 C 0.130 3.870 22 C -0.150 4.150 23 C -0.023 4.023 24 C -0.154 4.154 25 C -0.040 4.040 26 C -0.160 4.160 27 C 0.160 3.840 28 N -0.509 5.509 29 C 0.269 3.731 30 N -0.465 5.465 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.247 0.753 39 H 0.047 0.953 40 H -0.006 1.006 41 H 0.413 0.587 42 H 0.155 0.845 43 H 0.198 0.802 44 H 0.188 0.812 45 H 0.192 0.808 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 10.491 -14.092 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.152 4.152 5 C 0.010 3.990 6 N -0.331 5.331 7 C -0.394 4.394 8 H 0.089 0.911 9 C -0.248 4.248 10 N -0.579 5.579 11 Si 0.793 3.207 12 H -0.219 1.219 13 H -0.218 1.218 14 H -0.185 1.185 15 C 0.053 3.947 16 C 0.032 3.968 17 H 0.078 0.922 18 N -0.336 5.336 19 C 0.342 3.658 20 O -0.440 6.440 21 C -0.025 4.025 22 C -0.171 4.171 23 C -0.049 4.049 24 C -0.159 4.159 25 C -0.067 4.067 26 C -0.180 4.180 27 C -0.016 4.016 28 N -0.219 5.219 29 C 0.031 3.969 30 N -0.178 5.178 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.012 0.988 41 H 0.250 0.750 42 H 0.172 0.828 43 H 0.215 0.785 44 H 0.205 0.795 45 H 0.209 0.791 46 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -19.307 10.496 -12.503 25.284 hybrid contribution 0.929 -1.233 -1.475 2.135 sum -18.379 9.263 -13.978 24.879 Atomic orbital electron populations 1.21756 0.93119 1.01802 1.02473 1.21278 0.96886 0.99246 0.93140 0.90874 1.21959 0.95717 1.00385 0.97186 1.21189 0.93550 0.96172 0.88067 1.44238 1.48168 1.39901 1.00834 1.19539 1.09590 1.03889 1.06371 0.91058 1.25849 0.98637 1.00473 0.99859 1.70197 1.38509 1.30925 1.18249 0.85291 0.77129 0.79916 0.78338 1.21933 1.21840 1.18473 1.20755 0.89431 0.94844 0.89640 1.21666 0.95121 0.96086 0.83966 0.92248 1.45845 1.63227 1.15169 1.09335 1.18361 0.78051 0.85882 0.83511 1.90786 1.51346 1.17085 1.84811 1.21228 0.96990 0.89749 0.94542 1.21952 1.00159 1.02856 0.92113 1.21947 0.91202 0.92197 0.99530 1.20050 1.02773 0.96694 0.96379 1.22025 0.92013 0.94712 0.97902 1.22568 0.99853 0.95767 0.99767 1.23930 0.88801 1.01370 0.87510 1.67626 1.13323 1.06465 1.34520 1.19527 0.97286 0.91524 0.88548 1.67188 1.10525 1.07890 1.32195 0.93282 0.90118 0.92943 0.88393 0.92611 0.96313 0.92126 0.94430 0.93488 0.98844 0.74969 0.82763 0.78496 0.79471 0.79123 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 9.02 71.98 0.65 -2.97 16 2 C -0.09 -2.92 2.27 -10.77 -0.02 -2.95 16 3 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 4 C -0.11 -3.80 5.36 30.67 0.16 -3.64 16 5 C 0.14 5.76 6.51 86.36 0.56 6.32 16 6 N -0.61 -32.77 3.00 -699.07 -2.09 -34.87 16 7 C -0.26 -15.52 9.59 84.03 0.81 -14.71 16 8 H 0.07 4.03 7.89 -2.91 -0.02 4.01 16 9 C -0.05 -3.19 4.91 84.86 0.42 -2.77 16 10 N -0.93 -59.82 11.19 21.65 0.24 -59.58 16 11 Si 0.97 48.47 29.59 68.60 2.03 50.50 16 12 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 13 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.18 9.71 4.88 86.36 0.42 10.14 16 16 C 0.14 5.91 2.06 45.07 0.09 6.01 16 17 H 0.06 2.86 7.58 -2.39 -0.02 2.84 16 18 N -0.69 -27.03 4.36 -444.56 -1.94 -28.97 16 19 C 0.56 23.08 7.78 86.93 0.68 23.75 16 20 O -0.56 -27.30 15.94 -3.66 -0.06 -27.35 16 21 C 0.13 4.47 6.75 42.30 0.29 4.76 16 22 C -0.15 -4.05 9.54 22.36 0.21 -3.83 16 23 C -0.02 -0.41 9.89 22.47 0.22 -0.18 16 24 C -0.15 -3.03 5.75 -21.20 -0.12 -3.15 16 25 C -0.04 -0.39 9.90 22.49 0.22 -0.17 16 26 C -0.16 -1.17 10.04 22.17 0.22 -0.94 16 27 C 0.16 2.18 11.14 85.10 0.95 3.13 16 28 N -0.51 -12.92 10.43 -193.76 -2.02 -14.94 16 29 C 0.27 7.62 7.62 135.12 1.03 8.65 16 30 N -0.46 -15.66 9.56 -182.98 -1.75 -17.41 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.41 7.36 -2.39 -0.02 1.39 16 34 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 2.49 7.94 -2.39 -0.02 2.47 16 38 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.05 2.98 6.04 -2.38 -0.01 2.96 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.41 14.77 7.61 -92.71 -0.71 14.07 16 42 H 0.15 4.11 7.60 -2.91 -0.02 4.09 16 43 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.19 0.16 8.06 -2.91 -0.02 0.13 16 45 H 0.19 -0.37 8.06 -2.91 -0.02 -0.39 16 46 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -86.98 377.93 1.50 -85.48 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.30 Total: 19.72 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.79 Total: 27.43 kcal Atomic # 7 Polarization: -148.21 SS G_CDS: -7.56 Total: -155.77 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -86.98 1.50 -85.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966232059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.494 kcal (2) G-P(sol) polarization free energy of solvation -86.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds