Wall clock time and date at job start Wed Apr 1 2020 00:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.45930 * 2 1 4 4 C 1.53049 * 109.45742 * 119.95533 * 2 1 3 5 5 C 1.53194 * 109.31045 * 181.38526 * 4 2 1 6 6 N 1.46930 * 108.77450 * 305.36863 * 5 4 2 7 7 C 1.36943 * 120.62655 * 233.58528 * 6 5 4 8 8 H 1.07994 * 120.00236 * 27.68283 * 7 6 5 9 9 C 1.38812 * 119.99518 * 207.68793 * 7 6 5 10 10 N 1.31615 * 120.00661 * 17.36745 * 9 7 6 11 11 Si 1.86805 * 119.99609 * 197.36969 * 9 7 6 12 12 H 1.48492 * 109.47226 * 89.99831 * 11 9 7 13 13 H 1.48495 * 109.47092 * 209.99863 * 11 9 7 14 14 H 1.48506 * 109.47065 * 329.99658 * 11 9 7 15 15 C 1.46926 * 118.74132 * 53.61048 * 6 5 4 16 16 C 1.53040 * 109.46225 * 240.02303 * 2 1 3 17 17 H 1.09006 * 109.49396 * 58.63349 * 16 2 1 18 18 N 1.46501 * 109.49999 * 298.56766 * 16 2 1 19 19 C 1.34774 * 120.00106 * 155.26857 * 18 16 2 20 20 O 1.21547 * 119.99569 * 359.73174 * 19 18 16 21 21 C 1.47917 * 119.99984 * 179.72224 * 19 18 16 22 22 C 1.38939 * 119.84319 * 180.02562 * 21 19 18 23 23 C 1.40648 * 117.38872 * 179.97438 * 22 21 19 24 24 C 1.40260 * 122.04454 * 180.02562 * 23 22 21 25 25 C 1.36267 * 119.47615 * 179.97438 * 24 23 22 26 26 C 1.39320 * 120.87417 * 0.02562 * 25 24 23 27 27 C 1.36233 * 121.15978 * 359.96781 * 26 25 24 28 28 C 1.40332 * 119.67671 * 0.05340 * 27 26 25 29 29 N 1.33820 * 121.62070 * 179.97438 * 28 27 26 30 30 N 1.28442 * 121.69253 * 179.66518 * 29 28 27 31 31 H 1.09004 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46748 * 299.97327 * 1 2 3 33 33 H 1.08992 * 109.46769 * 59.97293 * 1 2 3 34 34 H 1.08991 * 109.49973 * 301.33433 * 4 2 1 35 35 H 1.09002 * 109.49304 * 61.44263 * 4 2 1 36 36 H 1.09000 * 109.58853 * 65.15332 * 5 4 2 37 37 H 1.09003 * 109.58581 * 185.44120 * 5 4 2 38 38 H 0.96991 * 120.00536 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.58507 * 186.60155 * 15 6 5 40 40 H 1.08999 * 109.58417 * 66.17335 * 15 6 5 41 41 H 0.97004 * 119.99438 * 334.99846 * 18 16 2 42 42 H 1.08003 * 121.30722 * 0.02562 * 22 21 19 43 43 H 1.08005 * 120.26039 * 0.02562 * 24 23 22 44 44 H 1.07994 * 119.56101 * 179.97438 * 25 24 23 45 45 H 1.08006 * 119.42480 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.16458 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7206 1.2503 5 6 3.5714 -0.6884 1.2645 6 7 4.0679 -1.2488 0.0003 7 6 4.9765 -2.2734 0.0005 8 1 5.0098 -2.9655 0.8289 9 6 5.8547 -2.4223 -1.0641 10 7 6.0605 -1.4207 -1.8927 11 14 6.7446 -4.0446 -1.3208 12 1 5.9275 -4.9246 -2.1944 13 1 8.0591 -3.7919 -1.9636 14 1 6.9545 -4.7071 -0.0084 15 6 3.5714 -0.6887 -1.2641 16 6 2.0399 -0.7210 -1.2499 17 1 1.6568 -0.2214 -2.1398 18 7 1.5802 -2.1119 -1.2339 19 6 1.4569 -2.7942 -2.3896 20 8 1.7225 -2.2540 -3.4455 21 6 0.9986 -4.2005 -2.3729 22 6 0.8732 -4.9010 -3.5662 23 6 0.4339 -6.2350 -3.4903 24 6 0.2735 -7.0319 -4.6333 25 6 -0.1548 -8.3185 -4.4990 26 6 -0.4354 -8.8511 -3.2426 27 6 -0.2902 -8.1048 -2.1121 28 6 0.1484 -6.7753 -2.2089 29 7 0.3040 -6.0072 -1.1242 30 7 0.7114 -4.7921 -1.2106 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3632 0.5142 -0.8897 34 1 1.6573 -0.2204 2.1399 35 1 1.6978 -1.7555 1.2386 36 1 3.9143 0.3411 1.3674 37 1 3.9416 -1.2822 2.1002 38 1 6.6739 -1.5248 -2.6368 39 1 3.9418 -1.2848 -2.0981 40 1 3.9143 0.3408 -1.3672 41 1 1.3683 -2.5429 -0.3911 42 1 1.1047 -4.4396 -4.5149 43 1 0.4886 -6.6292 -5.6121 44 1 -0.2792 -8.9331 -5.3782 45 1 -0.7739 -9.8737 -3.1633 46 1 -0.5119 -8.5341 -1.1463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967618343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:53 Heat of formation + Delta-G solvation = 64.265815 kcal Electronic energy + Delta-G solvation = -30032.558637 eV Core-core repulsion = 26116.151730 eV Total energy + Delta-G solvation = -3916.406908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43904 -39.57664 -38.04510 -37.37622 -34.14511 -33.77926 -32.91094 -31.76400 -30.98257 -30.66471 -29.07792 -27.30140 -25.40641 -25.09830 -23.97638 -22.66053 -22.29502 -21.14250 -21.03546 -18.88980 -18.65857 -18.47606 -17.01649 -16.65698 -16.22774 -15.47534 -15.16465 -14.86116 -14.85805 -14.59206 -14.24005 -13.97776 -13.77709 -13.65708 -13.54964 -13.22814 -12.96316 -12.58964 -12.56774 -12.46231 -12.27614 -11.92027 -11.53987 -11.40264 -11.25631 -11.07887 -10.88391 -10.83754 -10.72204 -10.45395 -10.17998 -9.91679 -9.87105 -9.72260 -9.57971 -9.54275 -9.44161 -8.63998 -8.42952 -8.35079 -6.61444 -5.73542 -3.15234 -0.21734 0.27687 1.51231 2.33989 3.28171 3.39506 3.44104 3.46960 3.47511 3.86663 3.91918 4.11239 4.33909 4.44170 4.53195 4.53969 4.75732 4.86512 5.01283 5.22931 5.29417 5.32658 5.38452 5.44948 5.45444 5.56113 5.59763 5.60887 5.92265 5.94166 5.97143 5.98155 6.02969 6.07400 6.20945 6.32120 6.37607 6.40004 6.49009 6.57788 6.68946 6.80563 6.91527 7.03436 7.36722 7.68517 7.85120 8.02963 8.47359 8.50173 8.66898 9.25535 9.89598 10.45013 11.34464 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.004201 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.888994 B = 6663.861903 C = 8056.293683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.131 4.131 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.064 0.936 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.291 1.291 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.160 3.840 16 C 0.122 3.878 17 H 0.078 0.922 18 N -0.672 5.672 19 C 0.573 3.427 20 O -0.538 6.538 21 C 0.007 3.993 22 C -0.032 4.032 23 C -0.075 4.075 24 C -0.093 4.093 25 C -0.102 4.102 26 C -0.096 4.096 27 C -0.078 4.078 28 C 0.068 3.932 29 N -0.203 5.203 30 N -0.185 5.185 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.253 0.747 39 H 0.097 0.903 40 H 0.028 0.972 41 H 0.407 0.593 42 H 0.166 0.834 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -9.551 -2.885 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.378 4.378 8 H 0.082 0.918 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.725 3.275 12 H -0.218 1.218 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.033 3.967 16 C 0.017 3.983 17 H 0.096 0.904 18 N -0.321 5.321 19 C 0.355 3.645 20 O -0.415 6.415 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.083 4.083 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.100 4.100 28 C -0.059 4.059 29 N -0.059 5.059 30 N -0.043 5.043 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.046 0.954 41 H 0.244 0.756 42 H 0.184 0.816 43 H 0.158 0.842 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.829 -8.915 -2.174 18.296 hybrid contribution 0.634 -1.256 -1.350 1.950 sum -15.195 -10.172 -3.524 18.621 Atomic orbital electron populations 1.21863 0.95955 1.01529 1.00954 1.21310 0.94656 0.99848 0.95397 0.90278 1.22104 0.99175 0.99743 0.96053 1.20933 0.90728 0.96501 0.90190 1.43979 1.48168 1.39600 0.99204 1.19121 1.09635 1.02995 1.06094 0.91793 1.24960 0.97249 0.97083 0.99957 1.69994 1.37674 1.28824 1.17785 0.86406 0.78913 0.84244 0.77974 1.21812 1.21685 1.20409 1.21211 0.86434 0.97927 0.91094 1.21927 0.99191 0.79964 0.97246 0.90361 1.45711 1.64224 1.13796 1.08384 1.17327 0.78580 0.83586 0.84969 1.90779 1.51425 1.68513 1.30814 1.22745 1.01118 0.97659 0.91124 1.22609 0.91077 0.92110 1.00510 1.18823 0.99901 0.94639 0.94929 1.21054 0.98487 0.94076 0.97536 1.21086 0.97650 0.95303 0.98077 1.21069 0.98176 1.00406 0.92031 1.20794 0.98044 0.90969 1.00145 1.20453 0.98536 0.96522 0.90417 1.73877 1.08139 0.98696 1.25218 1.73225 1.04134 1.03529 1.23427 0.92911 0.93045 0.93139 0.92654 0.92384 0.96388 0.92743 0.93667 0.88484 0.95421 0.75609 0.81608 0.84215 0.84780 0.84611 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.05 37.16 0.34 -1.62 16 2 C -0.09 -1.50 2.48 -90.57 -0.22 -1.72 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.13 -2.17 5.20 -26.61 -0.14 -2.31 16 5 C 0.14 2.92 6.51 -3.71 -0.02 2.89 16 6 N -0.59 -14.49 2.91 -172.32 -0.50 -14.99 16 7 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 9 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 10 N -0.90 -26.76 11.19 55.49 0.62 -26.14 16 11 Si 0.89 22.74 29.59 -169.99 -5.03 17.71 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.16 3.86 4.91 -3.71 -0.02 3.85 16 16 C 0.12 2.37 2.24 -67.81 -0.15 2.22 16 17 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 18 N -0.67 -12.88 4.24 -54.61 -0.23 -13.11 16 19 C 0.57 11.46 7.77 -12.30 -0.10 11.37 16 20 O -0.54 -11.92 16.02 5.32 0.09 -11.84 16 21 C 0.01 0.13 6.82 -82.90 -0.57 -0.43 16 22 C -0.03 -0.49 9.51 -38.41 -0.37 -0.85 16 23 C -0.07 -0.98 5.75 -106.80 -0.61 -1.59 16 24 C -0.09 -0.88 9.81 -39.53 -0.39 -1.27 16 25 C -0.10 -0.76 9.96 -39.89 -0.40 -1.15 16 26 C -0.10 -0.72 9.94 -39.90 -0.40 -1.12 16 27 C -0.08 -0.79 10.00 -39.52 -0.40 -1.19 16 28 C 0.07 0.94 6.69 -84.79 -0.57 0.37 16 29 N -0.20 -3.32 11.55 32.24 0.37 -2.95 16 30 N -0.19 -3.30 10.70 33.24 0.36 -2.95 16 31 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.99 6.40 -51.93 -0.33 0.65 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 39 H 0.10 2.75 6.04 -51.93 -0.31 2.44 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.41 7.53 5.97 -40.82 -0.24 7.28 16 42 H 0.17 2.23 7.69 -52.48 -0.40 1.83 16 43 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 46 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -33.30 375.07 -9.18 -42.48 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.27 Total: 5.63 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -4.23 Total: 0.50 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.62 Total: -60.14 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.30 -9.18 -42.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967618343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.742 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds