Wall clock time and date at job start Wed Apr 1 2020 00:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47403 * 2 1 4 4 N 1.46505 * 109.46965 * 119.99826 * 2 1 3 5 5 C 1.34777 * 120.00207 * 275.00529 * 4 2 1 6 6 O 1.21579 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.47654 * 120.00279 * 180.02562 * 5 4 2 8 8 C 1.39716 * 120.07863 * 359.71998 * 7 5 4 9 9 C 1.37724 * 119.91700 * 179.72396 * 8 7 5 10 10 C 1.39043 * 120.08173 * 0.53279 * 9 8 7 11 11 N 1.39856 * 119.91828 * 179.74500 * 10 9 8 12 12 C 1.37155 * 126.48747 * 359.73471 * 11 10 9 13 13 C 1.34627 * 106.83013 * 179.84647 * 12 11 10 14 14 N 1.34150 * 108.21509 * 0.41610 * 13 12 11 15 15 C 1.30484 * 109.36420 * 359.73721 * 14 13 12 16 16 C 1.39043 * 120.15535 * 359.76176 * 10 9 8 17 17 C 1.37718 * 120.08530 * 359.96109 * 16 10 9 18 18 C 1.53002 * 109.47489 * 239.99523 * 2 1 3 19 19 C 1.53496 * 114.20179 * 60.00300 * 18 2 1 20 20 N 1.47070 * 87.98352 * 87.52002 * 19 18 2 21 21 C 1.36935 * 136.05550 * 207.07944 * 20 19 18 22 22 H 1.08005 * 120.00172 * 6.50069 * 21 20 19 23 23 C 1.38815 * 119.99990 * 186.49806 * 21 20 19 24 24 N 1.31619 * 119.99663 * 6.42579 * 23 21 20 25 25 Si 1.86800 * 119.99976 * 186.42252 * 23 21 20 26 26 H 1.48495 * 109.47340 * 265.02201 * 25 23 21 27 27 H 1.48498 * 109.46951 * 25.02385 * 25 23 21 28 28 H 1.48498 * 109.46744 * 145.01993 * 25 23 21 29 29 C 1.47064 * 87.88277 * 27.34197 * 20 19 18 30 30 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47570 * 300.00443 * 1 2 3 32 32 H 1.09008 * 109.46757 * 59.99942 * 1 2 3 33 33 H 0.96997 * 119.99929 * 94.99497 * 4 2 1 34 34 H 1.07998 * 120.03773 * 359.97438 * 8 7 5 35 35 H 1.07999 * 119.95593 * 180.27436 * 9 8 7 36 36 H 1.08000 * 126.58774 * 359.96188 * 12 11 10 37 37 H 1.08008 * 125.89150 * 180.15390 * 13 12 11 38 38 H 1.08007 * 125.71825 * 180.02562 * 15 14 13 39 39 H 1.08006 * 119.95580 * 179.97438 * 16 10 9 40 40 H 1.08001 * 120.03918 * 180.02562 * 17 16 10 41 41 H 1.08996 * 113.41116 * 286.80792 * 18 2 1 42 42 H 1.09004 * 113.46865 * 332.74440 * 19 18 2 43 43 H 1.08993 * 113.51976 * 202.30849 * 19 18 2 44 44 H 0.97005 * 119.99413 * 179.97438 * 24 23 21 45 45 H 1.09000 * 113.46743 * 87.44096 * 29 20 19 46 46 H 1.08999 * 113.46191 * 217.87327 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1615 2.4117 7 6 2.6396 -0.7141 3.5627 8 6 2.9674 -2.0710 3.5032 9 6 3.4320 -2.7154 4.6282 10 6 3.5645 -2.0200 5.8250 11 7 4.0316 -2.6791 6.9666 12 6 4.3899 -4.0000 7.0566 13 6 4.7813 -4.2120 8.3272 14 7 4.6588 -3.0589 9.0017 15 6 4.2109 -2.1333 8.1984 16 6 3.2334 -0.6712 5.8894 17 6 2.7736 -0.0188 4.7671 18 6 2.0401 -0.7213 -1.2492 19 6 1.5899 -0.0847 -2.5714 20 7 2.7724 0.7863 -2.4944 21 6 3.1106 2.0322 -2.9510 22 1 2.3680 2.6506 -3.4334 23 6 4.4080 2.5005 -2.7940 24 7 5.3428 1.7030 -2.3223 25 14 4.8269 4.2623 -3.2520 26 1 5.3584 4.3005 -4.6381 27 1 3.6036 5.0999 -3.1677 28 1 5.8517 4.7872 -2.3142 29 6 3.4341 -0.2723 -1.7170 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 2.2489 -1.6318 1.1527 34 1 2.8604 -2.6128 2.5751 35 1 3.6898 -3.7631 4.5818 36 1 4.3648 -4.7295 6.2606 37 1 5.1295 -5.1498 8.7344 38 1 4.0157 -1.1056 8.4672 39 1 3.3372 -0.1342 6.8208 40 1 2.5170 1.0290 4.8178 41 1 1.9118 -1.8029 -1.2074 42 1 0.6467 0.4561 -2.4938 43 1 1.6124 -0.7736 -3.4157 44 1 6.2494 2.0301 -2.2129 45 1 3.9433 -1.0113 -2.3356 46 1 4.0621 0.1087 -0.9117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970222967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:05 Heat of formation + Delta-G solvation = 121.758160 kcal Electronic energy + Delta-G solvation = -28304.401140 eV Core-core repulsion = 24390.487287 eV Total energy + Delta-G solvation = -3913.913852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.71188 -40.34542 -39.02564 -38.03046 -34.77273 -34.47494 -32.30740 -31.78546 -30.75471 -29.97071 -29.18956 -27.63317 -25.14583 -24.42620 -23.87230 -23.57332 -22.14236 -21.39749 -20.92152 -20.25997 -19.30751 -18.87522 -17.41682 -16.76002 -16.28751 -15.89809 -15.67784 -15.29106 -15.06518 -14.86292 -14.69605 -14.37652 -14.10746 -14.03479 -13.85447 -13.76711 -13.42246 -13.22324 -12.99883 -12.79594 -12.55276 -12.06606 -11.83526 -11.56652 -11.41296 -11.00028 -10.94381 -10.81849 -10.73335 -10.50671 -10.36566 -9.97157 -9.83505 -9.76286 -9.56330 -9.24356 -9.14003 -8.89916 -8.75970 -8.62565 -6.88706 -5.78549 -3.09109 0.15322 0.85197 1.72888 2.22297 2.70310 2.83716 3.22874 3.39917 3.45545 3.47670 3.61328 4.10297 4.19370 4.27205 4.44879 4.46886 4.56531 4.74628 4.82298 4.98238 5.09421 5.15749 5.22148 5.22917 5.30337 5.45004 5.46516 5.51804 5.70573 5.71434 5.83236 5.92071 5.98590 6.00486 6.06001 6.18383 6.26154 6.30965 6.40574 6.50782 6.60643 6.65418 6.80215 6.82782 7.15736 7.25323 7.52079 7.57283 7.66024 7.96595 8.34362 9.03322 9.70490 10.63775 11.40117 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015942 B = 0.002266 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.970369 B =12352.018725 C =12955.351550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.104 0.896 4 N -0.712 5.712 5 C 0.555 3.445 6 O -0.531 6.531 7 C -0.130 4.130 8 C -0.058 4.058 9 C -0.139 4.139 10 C 0.151 3.849 11 N -0.412 5.412 12 C -0.052 4.052 13 C -0.023 4.023 14 N -0.486 5.486 15 C 0.191 3.809 16 C -0.141 4.141 17 C -0.032 4.032 18 C -0.157 4.157 19 C 0.125 3.875 20 N -0.607 5.607 21 C -0.218 4.218 22 H 0.081 0.919 23 C -0.006 4.006 24 N -0.919 5.919 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.279 1.279 28 H -0.290 1.290 29 C 0.167 3.833 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.394 0.606 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.210 0.790 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 -13.708 16.939 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 H 0.122 0.878 4 N -0.362 5.362 5 C 0.341 3.659 6 O -0.408 6.408 7 C -0.134 4.134 8 C -0.077 4.077 9 C -0.159 4.159 10 C 0.057 3.943 11 N -0.091 5.091 12 C -0.182 4.182 13 C -0.169 4.169 14 N -0.202 5.202 15 C -0.090 4.090 16 C -0.161 4.161 17 C -0.052 4.052 18 C -0.177 4.177 19 C -0.002 4.002 20 N -0.333 5.333 21 C -0.346 4.346 22 H 0.099 0.901 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.204 1.204 28 H -0.216 1.216 29 C 0.041 3.959 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.229 0.771 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.197 0.803 37 H 0.192 0.808 38 H 0.227 0.773 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.969 -12.429 17.673 22.415 hybrid contribution 0.456 0.107 -1.348 1.427 sum -5.513 -12.322 16.325 21.183 Atomic orbital electron populations 1.22131 0.95760 1.01289 1.02387 1.20656 0.92921 0.98286 0.81450 0.87790 1.45999 1.66703 1.13702 1.09813 1.18047 0.78192 0.86590 0.83037 1.90812 1.49941 1.15181 1.84854 1.20206 1.03905 0.94251 0.95027 1.21221 0.94978 0.93360 0.98169 1.20757 1.03402 1.00680 0.91054 1.17998 0.98222 0.92351 0.85686 1.43240 1.47454 1.09450 1.08935 1.22833 1.08585 0.85618 1.01159 1.22401 1.05841 0.97795 0.90833 1.70344 1.17700 1.00112 1.32090 1.25361 1.03159 1.00787 0.79676 1.20793 1.03063 0.91998 1.00237 1.21183 0.93133 1.00819 0.90015 1.23332 1.02182 0.97526 0.94705 1.22419 0.92767 0.92142 0.92830 1.45726 1.12428 1.12669 1.62506 1.18929 0.94364 0.88171 1.33117 0.90132 1.24808 0.95397 0.98375 1.01748 1.69842 1.01428 1.34358 1.50923 0.86124 0.77991 0.84206 0.77611 1.21679 1.20449 1.21600 1.22033 0.90976 0.88973 0.93958 0.93095 0.92697 0.91154 0.77140 0.84330 0.84562 0.80332 0.80759 0.77320 0.84418 0.83331 0.91219 0.93758 0.94874 0.93715 0.95398 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.29 37.16 0.35 -1.88 16 2 C 0.17 2.81 2.43 -67.93 -0.16 2.65 16 3 H 0.10 2.26 7.36 -51.93 -0.38 1.88 16 4 N -0.71 -9.76 5.03 -54.81 -0.28 -10.04 16 5 C 0.56 8.33 7.73 -12.42 -0.10 8.24 16 6 O -0.53 -10.16 16.00 5.30 0.08 -10.07 16 7 C -0.13 -1.49 5.88 -104.95 -0.62 -2.11 16 8 C -0.06 -0.50 9.53 -39.22 -0.37 -0.87 16 9 C -0.14 -1.09 9.45 -39.47 -0.37 -1.46 16 10 C 0.15 1.31 6.64 -83.60 -0.55 0.75 16 11 N -0.41 -3.59 2.98 -62.06 -0.19 -3.78 16 12 C -0.05 -0.41 10.85 -16.45 -0.18 -0.59 16 13 C -0.02 -0.20 11.85 -17.82 -0.21 -0.41 16 14 N -0.49 -5.23 11.24 -14.46 -0.16 -5.39 16 15 C 0.19 1.70 11.91 -89.59 -1.07 0.64 16 16 C -0.14 -1.19 9.45 -39.47 -0.37 -1.56 16 17 C -0.03 -0.33 9.58 -39.22 -0.38 -0.71 16 18 C -0.16 -2.66 3.73 -89.97 -0.34 -3.00 16 19 C 0.13 2.43 8.08 -8.51 -0.07 2.36 16 20 N -0.61 -15.24 3.57 -184.62 -0.66 -15.90 16 21 C -0.22 -6.12 10.73 -15.06 -0.16 -6.28 16 22 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.92 -27.47 11.81 55.49 0.66 -26.81 16 25 Si 0.91 22.48 29.56 -169.99 -5.02 17.45 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 C 0.17 3.75 6.77 -8.38 -0.06 3.69 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.01 6.50 -51.92 -0.34 0.67 16 33 H 0.39 4.07 6.62 -40.82 -0.27 3.80 16 34 H 0.14 0.88 6.39 -52.49 -0.34 0.54 16 35 H 0.14 0.74 6.79 -52.49 -0.36 0.39 16 36 H 0.18 0.85 7.13 -52.49 -0.37 0.47 16 37 H 0.18 1.08 8.06 -52.48 -0.42 0.65 16 38 H 0.21 1.17 7.05 -52.48 -0.37 0.80 16 39 H 0.14 0.81 6.75 -52.48 -0.35 0.46 16 40 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.81 6.43 -51.93 -0.33 0.48 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 1.56 7.56 -51.93 -0.39 1.16 16 LS Contribution 382.03 15.07 5.76 5.76 Total: -1.00 -36.09 382.03 -10.56 -46.65 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.99 Total: 2.95 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.76 Total: -0.83 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.63 Total: -61.91 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.09 -10.56 -46.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970222967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.407 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds