Wall clock time and date at job start Wed Apr 1 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21591 * 120.00220 * 359.97438 * 5 4 2 7 7 C 1.47583 * 119.99444 * 179.97438 * 5 4 2 8 8 C 1.39806 * 120.00860 * 359.72011 * 7 5 4 9 9 C 1.36589 * 119.99807 * 179.71920 * 8 7 5 10 10 C 1.39780 * 119.99894 * 0.58318 * 9 8 7 11 11 C 1.47665 * 119.99442 * 179.71833 * 10 9 8 12 12 C 1.36238 * 126.77729 * 180.02562 * 11 10 9 13 13 N 1.33681 * 107.86117 * 179.97438 * 12 11 10 14 14 C 1.30659 * 109.57296 * 359.97438 * 13 12 11 15 15 N 1.34958 * 109.03272 * 359.76912 * 14 13 12 16 16 H 0.96999 * 126.45666 * 180.23318 * 15 14 13 17 17 C 1.39782 * 120.01102 * 359.69332 * 10 9 8 18 18 C 1.36580 * 120.00161 * 0.02562 * 17 10 9 19 19 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 20 20 C 1.53497 * 114.20787 * 299.99699 * 19 2 1 21 21 N 1.47062 * 87.98453 * 87.71861 * 20 19 2 22 22 C 1.36943 * 136.05579 * 207.08745 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27778 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48504 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47021 * 119.99661 * 26 24 22 29 29 H 1.48501 * 109.47039 * 240.00078 * 26 24 22 30 30 C 1.47067 * 87.88602 * 27.34481 * 21 20 19 31 31 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 33 33 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 34 34 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 35 35 H 1.07995 * 119.99998 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.00384 * 180.29485 * 9 8 7 37 37 H 1.08002 * 126.06809 * 359.93645 * 12 11 10 38 38 H 1.07999 * 125.47756 * 180.02562 * 14 13 12 39 39 H 1.07998 * 120.00003 * 180.02562 * 17 10 9 40 40 H 1.07998 * 120.00066 * 180.02562 * 18 17 10 41 41 H 1.09001 * 113.28445 * 166.93217 * 19 2 1 42 42 H 1.09000 * 113.46436 * 332.93489 * 20 19 2 43 43 H 1.08997 * 113.51966 * 202.51274 * 20 19 2 44 44 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 45 45 H 1.08994 * 113.46653 * 87.43736 * 30 21 20 46 46 H 1.08996 * 113.46465 * 217.87717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8576 1.1612 -2.4119 7 6 2.6395 -0.7142 -3.5619 8 6 2.9779 -2.0692 -3.4976 9 6 3.4282 -2.7143 -4.6142 10 6 3.5622 -2.0168 -5.8181 11 6 4.0549 -2.7129 -7.0236 12 6 4.2381 -2.1716 -8.2603 13 7 4.6959 -3.1352 -9.0659 14 6 4.8082 -4.2505 -8.3944 15 7 4.4262 -4.0360 -7.1179 16 1 4.4131 -4.6908 -6.4024 17 6 3.2293 -0.6607 -5.8812 18 6 2.7736 -0.0167 -4.7662 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3766 -0.9126 2.4972 22 6 -0.9105 -0.8194 2.9554 23 1 -1.2182 0.0423 3.5293 24 6 -1.8178 -1.8352 2.6877 25 7 -1.4426 -2.8854 1.9887 26 14 -3.5714 -1.7116 3.3194 27 1 -3.7380 -0.4426 4.0725 28 1 -4.5136 -1.7341 2.1718 29 1 -3.8564 -2.8601 4.2166 30 6 1.1558 -1.8880 1.7197 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8901 34 1 2.2489 -1.6319 -1.1525 35 1 2.8794 -2.6067 -2.5661 36 1 3.6851 -3.7622 -4.5657 37 1 4.0468 -1.1462 -8.5404 38 1 5.1553 -5.1913 -8.7954 39 1 3.3325 -0.1221 -6.8115 40 1 2.5161 1.0310 -4.8151 41 1 3.1030 -0.9579 1.2064 42 1 1.3912 0.9843 2.4930 43 1 2.2337 -0.3326 3.4151 44 1 -2.0767 -3.5951 1.8014 45 1 1.6858 -2.6121 2.3384 46 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970684396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:46:56 Heat of formation + Delta-G solvation = 93.996182 kcal Electronic energy + Delta-G solvation = -28318.037444 eV Core-core repulsion = 24402.919742 eV Total energy + Delta-G solvation = -3915.117702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.97323 -41.45862 -40.37752 -39.16192 -35.94146 -34.21574 -33.88981 -33.23823 -32.07378 -31.18526 -29.59493 -29.13222 -26.41019 -26.07039 -25.12810 -23.94579 -23.24765 -22.25877 -21.80000 -21.16891 -20.34924 -19.56138 -18.78603 -18.38781 -17.25795 -16.85171 -16.60048 -16.37854 -16.11397 -15.96474 -15.83527 -15.62879 -15.49376 -14.87786 -14.75362 -14.55004 -14.47021 -14.26622 -13.97947 -13.66318 -13.49569 -13.14339 -12.99631 -12.92377 -12.77584 -12.54432 -12.35881 -12.10531 -12.00590 -11.69973 -11.48285 -11.15901 -11.15687 -11.03273 -10.83966 -10.72884 -10.61312 -10.12207 -10.04521 -8.85504 -8.76901 -7.85120 -5.14455 -0.53333 0.40133 1.09785 1.45218 1.47171 1.55040 1.91688 2.13096 2.15500 2.22669 2.49826 2.92438 3.37218 3.51283 3.57422 3.68707 3.72437 3.77785 3.90086 3.94045 4.01181 4.25619 4.31444 4.39585 4.49271 4.52632 4.56511 4.69109 4.74147 4.86496 4.89264 4.91925 5.01198 5.04468 5.11297 5.13403 5.23345 5.30154 5.35615 5.46808 5.52574 5.59395 5.65638 5.67227 5.79134 5.79597 6.01153 6.48439 6.58749 6.98906 7.04573 7.22594 7.67203 8.68100 9.31860 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018297 B = 0.002142 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.936154 B =13067.906718 C =13619.249038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.185 3.815 3 H 0.077 0.923 4 N -0.704 5.704 5 C 0.553 3.447 6 O -0.583 6.583 7 C -0.151 4.151 8 C -0.073 4.073 9 C -0.126 4.126 10 C 0.015 3.985 11 C -0.005 4.005 12 C -0.009 4.009 13 N -0.538 5.538 14 C 0.208 3.792 15 N -0.554 5.554 16 H 0.437 0.563 17 C -0.112 4.112 18 C -0.061 4.061 19 C -0.129 4.129 20 C 0.124 3.876 21 N -0.631 5.631 22 C -0.212 4.212 23 H 0.077 0.923 24 C -0.058 4.058 25 N -0.943 5.943 26 Si 0.962 3.038 27 H -0.270 1.270 28 H -0.297 1.297 29 H -0.295 1.295 30 C 0.157 3.843 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.410 0.590 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.183 0.817 38 H 0.250 0.750 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.245 0.755 45 H 0.019 0.981 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.242 -4.150 -17.712 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.081 3.919 3 H 0.095 0.905 4 N -0.355 5.355 5 C 0.342 3.658 6 O -0.464 6.464 7 C -0.155 4.155 8 C -0.091 4.091 9 C -0.144 4.144 10 C 0.013 3.987 11 C -0.120 4.120 12 C -0.159 4.159 13 N -0.257 5.257 14 C -0.075 4.075 15 N -0.158 5.158 16 H 0.278 0.722 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.002 4.002 21 N -0.357 5.357 22 C -0.340 4.340 23 H 0.095 0.905 24 C -0.252 4.252 25 N -0.592 5.592 26 Si 0.792 3.208 27 H -0.195 1.195 28 H -0.224 1.224 29 H -0.223 1.223 30 C 0.031 3.969 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.170 0.830 37 H 0.200 0.800 38 H 0.266 0.734 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.037 0.963 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.893 -3.304 -18.493 24.607 hybrid contribution -1.496 -0.903 1.909 2.588 sum 14.397 -4.208 -16.584 22.361 Atomic orbital electron populations 1.21929 0.95537 1.01846 0.99501 1.20321 0.93379 0.95641 0.82593 0.90517 1.45921 1.65851 1.14529 1.09159 1.18642 0.77098 0.86214 0.83842 1.90740 1.52615 1.17481 1.85605 1.20014 1.06107 0.95496 0.93836 1.21171 0.95499 0.92455 0.99995 1.21032 1.01035 1.01026 0.91307 1.18231 0.96651 0.93172 0.90640 1.19605 1.10634 0.85684 0.96043 1.22784 1.03698 1.00331 0.89093 1.70192 1.20617 1.00478 1.34436 1.25861 1.00770 1.00537 0.80346 1.43333 1.49690 1.09737 1.13028 0.72176 1.20972 0.99508 0.93291 0.99261 1.21001 0.95225 1.00614 0.91135 1.23133 0.99675 0.98511 0.93555 1.22542 0.87397 0.95738 0.94540 1.45922 1.04704 1.21755 1.63347 1.19144 0.84793 1.03128 1.26924 0.90473 1.25350 1.01129 0.96797 1.01929 1.69947 1.34468 1.10022 1.44796 0.85240 0.81075 0.77268 0.77188 1.19457 1.22433 1.22258 1.22178 0.89583 0.91452 0.93665 0.93257 0.91820 0.96151 0.75310 0.83510 0.83021 0.80038 0.73446 0.82837 0.84939 0.87251 0.93443 0.92888 0.94596 0.96311 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.07 71.98 0.58 -4.92 16 2 C 0.18 6.35 2.76 44.99 0.12 6.47 16 3 H 0.08 2.73 7.58 -2.39 -0.02 2.71 16 4 N -0.70 -20.44 5.03 -445.66 -2.24 -22.68 16 5 C 0.55 17.09 7.73 86.71 0.67 17.76 16 6 O -0.58 -22.45 15.99 -4.00 -0.06 -22.52 16 7 C -0.15 -3.62 5.88 -20.05 -0.12 -3.74 16 8 C -0.07 -1.29 9.48 22.26 0.21 -1.08 16 9 C -0.13 -1.77 9.66 22.26 0.21 -1.56 16 10 C 0.01 0.23 5.88 -20.04 -0.12 0.11 16 11 C 0.00 -0.07 6.96 40.24 0.28 0.21 16 12 C -0.01 -0.16 11.28 83.95 0.95 0.79 16 13 N -0.54 -9.71 11.22 -199.42 -2.24 -11.94 16 14 C 0.21 2.14 13.02 180.24 2.35 4.49 16 15 N -0.55 -5.06 6.06 -187.62 -1.14 -6.20 16 16 H 0.44 1.14 8.20 -92.71 -0.76 0.38 16 17 C -0.11 -1.90 9.52 22.26 0.21 -1.68 16 18 C -0.06 -1.33 9.53 22.26 0.21 -1.12 16 19 C -0.13 -4.23 4.24 -10.37 -0.04 -4.27 16 20 C 0.12 4.59 7.85 83.18 0.65 5.25 16 21 N -0.63 -29.93 2.18 -737.98 -1.61 -31.54 16 22 C -0.21 -11.31 9.60 84.03 0.81 -10.51 16 23 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 24 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 25 N -0.94 -54.00 11.50 21.65 0.25 -53.76 16 26 Si 0.96 45.25 29.55 68.60 2.03 47.27 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 30 C 0.16 6.65 6.41 83.27 0.53 7.18 16 31 H 0.05 2.36 6.33 -2.39 -0.02 2.34 16 32 H 0.06 2.96 5.95 -2.39 -0.01 2.94 16 33 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.41 9.72 6.61 -92.71 -0.61 9.11 16 35 H 0.15 2.08 6.38 -2.91 -0.02 2.06 16 36 H 0.15 1.13 7.27 -2.91 -0.02 1.11 16 37 H 0.18 2.47 7.30 -2.91 -0.02 2.45 16 38 H 0.25 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.15 1.89 7.04 -2.91 -0.02 1.87 16 40 H 0.13 3.05 7.64 -2.91 -0.02 3.03 16 41 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.05 1.71 8.12 -2.39 -0.02 1.70 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 2.48 5.72 -2.39 -0.01 2.47 16 Total: -1.00 -75.71 377.11 2.64 -73.08 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -0.33 Total: 17.64 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.98 Total: 10.64 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -6.98 Total: -126.11 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.71 2.64 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970684396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.073 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds