Wall clock time and date at job start Wed Apr 1 2020 00:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99563 * 2 1 4 4 C 1.54326 * 109.88230 * 238.90915 * 2 1 3 5 5 H 1.08994 * 110.87064 * 336.81635 * 4 2 1 6 6 N 1.46496 * 110.72078 * 100.02635 * 4 2 1 7 7 C 1.36945 * 119.99718 * 199.97461 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47174 * 270.00277 * 11 9 7 13 13 H 1.48501 * 109.47062 * 30.00228 * 11 9 7 14 14 H 1.48499 * 109.46981 * 150.00382 * 11 9 7 15 15 C 1.55159 * 102.94058 * 218.38706 * 4 2 1 16 16 C 1.54918 * 101.58370 * 35.49952 * 15 4 2 17 17 N 1.47018 * 109.88641 * 121.09750 * 2 1 3 18 18 C 1.34779 * 125.64775 * 298.39712 * 17 2 1 19 19 O 1.21633 * 120.00079 * 359.97438 * 18 17 2 20 20 C 1.47304 * 120.00242 * 179.97438 * 18 17 2 21 21 C 1.36450 * 126.19057 * 179.97438 * 20 18 17 22 22 N 1.36143 * 106.76098 * 179.97438 * 21 20 18 23 23 C 1.40212 * 126.21339 * 180.02562 * 22 21 20 24 24 C 1.38828 * 120.06939 * 359.72759 * 23 22 21 25 25 C 1.38126 * 119.93462 * 179.69774 * 24 23 22 26 26 C 1.38274 * 120.06278 * 0.59911 * 25 24 23 27 27 C 1.38276 * 120.13214 * 359.67652 * 26 25 24 28 28 C 1.38119 * 120.06860 * 0.02562 * 27 26 25 29 29 C 1.36105 * 107.56804 * 0.02562 * 22 21 20 30 30 N 1.30160 * 109.00674 * 359.75985 * 29 22 21 31 31 H 1.09005 * 109.46936 * 181.09498 * 1 2 3 32 32 H 1.08996 * 109.47276 * 301.09325 * 1 2 3 33 33 H 1.08996 * 109.47618 * 61.09521 * 1 2 3 34 34 H 0.96996 * 120.00499 * 19.97192 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08998 * 111.00583 * 153.57053 * 15 4 2 37 37 H 1.08999 * 111.00256 * 277.38908 * 15 4 2 38 38 H 1.08998 * 110.36517 * 81.82493 * 16 15 4 39 39 H 1.08996 * 110.36994 * 204.15551 * 16 15 4 40 40 H 1.07999 * 126.61733 * 0.02562 * 21 20 18 41 41 H 1.08004 * 120.02804 * 0.02562 * 24 23 22 42 42 H 1.07998 * 119.96667 * 180.29745 * 25 24 23 43 43 H 1.08007 * 119.93039 * 179.70093 * 26 25 24 44 44 H 1.08007 * 119.96488 * 180.02562 * 27 26 25 45 45 H 1.07996 * 120.03800 * 180.02562 * 28 27 26 46 46 H 1.07995 * 125.50160 * 180.02562 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 1.3065 -1.4458 -1.6211 6 7 2.4554 0.1962 -2.2875 7 6 2.5574 -0.2224 -3.5874 8 1 2.3430 -1.2497 -3.8422 9 6 2.9365 0.6737 -4.5773 10 7 3.1984 1.9256 -4.2667 11 14 3.0764 0.1025 -6.3504 12 1 4.4566 -0.3816 -6.6071 13 1 2.1119 -1.0004 -6.5927 14 1 2.7719 1.2354 -7.2609 15 6 3.2876 -1.5141 -0.6925 16 6 2.8146 -1.8794 0.7368 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3621 2.4657 19 8 1.1416 0.6239 2.7188 20 6 2.3704 -1.1714 3.5601 21 6 2.2257 -0.9324 4.8957 22 7 2.9020 -1.9185 5.5466 23 6 3.0185 -2.0650 6.9362 24 6 2.4144 -1.1479 7.7854 25 6 2.5258 -1.2984 9.1539 26 6 3.2485 -2.3543 9.6781 27 6 3.8560 -3.2662 8.8347 28 6 3.7431 -3.1244 7.4655 29 6 3.4444 -2.7362 4.6034 30 7 3.1231 -2.2929 3.4226 31 1 -0.3633 -1.0275 0.0196 32 1 -0.3633 0.5307 0.8800 33 1 -0.3634 0.4967 -0.8996 34 1 2.6483 1.1188 -2.0586 35 1 3.4636 2.5517 -4.9584 36 1 3.4852 -2.4109 -1.2797 37 1 4.1655 -0.8689 -0.6611 38 1 2.1887 -2.7714 0.7128 39 1 3.6716 -2.0337 1.3922 40 1 1.6793 -0.1185 5.3490 41 1 1.8535 -0.3205 7.3764 42 1 2.0520 -0.5880 9.8151 43 1 3.3382 -2.4673 10.7485 44 1 4.4195 -4.0902 9.2471 45 1 4.2175 -3.8371 6.8072 46 1 4.0413 -3.6139 4.8026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986296315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:33 Heat of formation + Delta-G solvation = 83.091014 kcal Electronic energy + Delta-G solvation = -28369.461826 eV Core-core repulsion = 24453.871241 eV Total energy + Delta-G solvation = -3915.590586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.74012 -39.84696 -39.31581 -37.19163 -34.64753 -33.95405 -31.86804 -31.54707 -30.77420 -30.19014 -29.73557 -28.76481 -25.06883 -24.62196 -23.97127 -22.94567 -22.71045 -21.30250 -21.19260 -19.93811 -19.40362 -18.29312 -17.14692 -16.87466 -16.25830 -16.10516 -15.88856 -15.38949 -15.35368 -14.74305 -14.52998 -14.50278 -14.02997 -13.89366 -13.78573 -13.52117 -13.29321 -13.16121 -12.81092 -12.55992 -12.30323 -12.01630 -11.75569 -11.73042 -11.49805 -11.11808 -11.03315 -10.93781 -10.80962 -10.45815 -10.38891 -10.14626 -9.88693 -9.72601 -9.67289 -9.61350 -9.17641 -8.85846 -8.75059 -8.18483 -6.94872 -5.75161 -3.04904 0.29484 0.67906 1.62756 2.13480 2.25988 3.18047 3.30010 3.45467 3.50704 3.52356 3.61694 4.02699 4.12802 4.19706 4.35878 4.52183 4.60815 4.64813 4.71959 4.84507 5.08438 5.13089 5.25086 5.29000 5.35553 5.42843 5.52539 5.71124 5.72857 5.74964 5.84273 5.86696 5.88036 5.97783 6.07479 6.14275 6.21286 6.23417 6.35938 6.50590 6.59280 6.71802 6.73609 6.76096 6.91618 7.06542 7.47702 7.72233 7.91412 8.42105 8.46936 9.53755 10.09458 10.44464 11.47195 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.002000 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.325888 B =13995.002426 C =14483.073783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.078 0.922 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.716 5.716 7 C -0.239 4.239 8 H 0.072 0.928 9 C -0.012 4.012 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.282 1.282 14 H -0.292 1.292 15 C -0.157 4.157 16 C 0.105 3.895 17 N -0.592 5.592 18 C 0.610 3.390 19 O -0.549 6.549 20 C -0.036 4.036 21 C 0.028 3.972 22 N -0.411 5.411 23 C 0.134 3.866 24 C -0.132 4.132 25 C -0.092 4.092 26 C -0.127 4.127 27 C -0.092 4.092 28 C -0.132 4.132 29 C 0.191 3.809 30 N -0.447 5.447 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.191 0.809 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -11.996 30.294 32.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.096 0.904 4 C 0.064 3.936 5 H 0.082 0.918 6 N -0.356 5.356 7 C -0.371 4.371 8 H 0.090 0.910 9 C -0.209 4.209 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.207 1.207 14 H -0.218 1.218 15 C -0.199 4.199 16 C -0.018 4.018 17 N -0.323 5.323 18 C 0.398 3.602 19 O -0.427 6.427 20 C -0.164 4.164 21 C -0.107 4.107 22 N -0.089 5.089 23 C 0.041 3.959 24 C -0.152 4.152 25 C -0.110 4.110 26 C -0.145 4.145 27 C -0.111 4.111 28 C -0.151 4.151 29 C -0.092 4.092 30 N -0.165 5.165 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.208 0.792 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.336 -11.859 29.536 31.829 hybrid contribution 0.113 0.247 -0.159 0.314 sum 0.449 -11.612 29.377 31.592 Atomic orbital electron populations 1.22045 0.94904 1.01597 1.02661 1.21912 0.94392 0.96869 0.84400 0.90402 1.21254 0.93710 0.91555 0.87042 0.91812 1.42350 1.81007 1.09128 1.03127 1.19211 1.38896 0.95084 0.83860 0.91005 1.24760 1.02325 0.95662 0.98105 1.69672 1.52767 1.02975 1.32469 0.86178 0.77704 0.77309 0.84904 1.21743 1.20733 1.21813 1.23586 1.01055 1.01494 0.93739 1.22522 0.95639 0.87292 0.96354 1.48300 1.51120 1.28568 1.04334 1.16439 0.79945 0.83257 0.80563 1.90780 1.41220 1.27307 1.83416 1.20667 1.05674 0.97553 0.92456 1.22686 1.00544 0.95137 0.92316 1.43099 1.38789 1.21980 1.05074 1.17891 1.00169 0.97488 0.80338 1.20995 1.01267 0.99287 0.93604 1.21089 0.97886 0.97925 0.94109 1.21301 0.97836 0.94948 1.00448 1.21064 0.98636 0.99150 0.92245 1.20873 1.00430 0.97505 0.96329 1.25379 1.02548 0.98936 0.82292 1.70805 1.13315 1.09752 1.22603 0.93115 0.91994 0.91131 0.78032 0.93464 0.90780 0.90880 0.92144 0.89046 0.79211 0.84834 0.84823 0.85229 0.84805 0.84840 0.76978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.10 37.15 0.34 -2.42 16 2 C 0.13 2.45 3.21 -66.96 -0.21 2.24 16 3 H 0.08 1.65 7.69 -51.93 -0.40 1.25 16 4 C 0.18 3.60 3.11 -66.10 -0.21 3.39 16 5 H 0.06 1.30 7.84 -51.93 -0.41 0.90 16 6 N -0.72 -18.03 5.25 -51.65 -0.27 -18.30 16 7 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 10 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 11 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 C -0.16 -2.87 6.77 -24.58 -0.17 -3.03 16 16 C 0.10 1.69 6.13 -2.53 -0.02 1.67 16 17 N -0.59 -10.52 3.06 -164.31 -0.50 -11.02 16 18 C 0.61 10.86 7.63 -12.57 -0.10 10.76 16 19 O -0.55 -10.91 15.93 5.25 0.08 -10.82 16 20 C -0.04 -0.53 6.80 -83.09 -0.57 -1.10 16 21 C 0.03 0.33 10.57 -16.28 -0.17 0.15 16 22 N -0.41 -3.95 2.97 -61.90 -0.18 -4.14 16 23 C 0.13 1.02 6.63 -83.59 -0.55 0.46 16 24 C -0.13 -0.88 9.46 -39.40 -0.37 -1.25 16 25 C -0.09 -0.46 10.04 -39.61 -0.40 -0.86 16 26 C -0.13 -0.55 10.04 -39.55 -0.40 -0.94 16 27 C -0.09 -0.41 10.04 -39.61 -0.40 -0.80 16 28 C -0.13 -0.74 9.46 -39.41 -0.37 -1.11 16 29 C 0.19 1.84 11.88 -89.68 -1.07 0.78 16 30 N -0.45 -5.91 8.36 -10.97 -0.09 -6.00 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.13 6.90 -51.93 -0.36 0.77 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.39 10.45 7.51 -40.82 -0.31 10.14 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.42 6.15 -51.93 -0.32 1.10 16 40 H 0.19 1.89 7.11 -52.49 -0.37 1.51 16 41 H 0.13 0.80 6.78 -52.48 -0.36 0.44 16 42 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.13 0.28 8.06 -52.48 -0.42 -0.14 16 44 H 0.13 0.28 8.06 -52.48 -0.42 -0.14 16 45 H 0.13 0.49 6.74 -52.49 -0.35 0.14 16 46 H 0.21 1.14 7.03 -52.49 -0.37 0.77 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -34.24 380.62 -10.60 -44.84 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.17 Total: 9.09 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -4.90 Total: 0.75 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.33 Total: -66.97 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.24 -10.60 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986296315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.935 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds