Wall clock time and date at job start Wed Apr 1 2020 00:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.87042 * 2 1 4 4 C 1.54316 * 109.88595 * 121.17675 * 2 1 3 5 5 H 1.08997 * 110.72381 * 259.97546 * 4 2 1 6 6 N 1.46503 * 110.72041 * 23.25177 * 4 2 1 7 7 C 1.36934 * 119.99994 * 205.00362 * 6 4 2 8 8 H 1.08001 * 120.00338 * 359.97438 * 7 6 4 9 9 C 1.38813 * 120.00215 * 179.97438 * 7 6 4 10 10 N 1.31625 * 119.99964 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00525 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47279 * 89.99277 * 11 9 7 13 13 H 1.48496 * 109.47353 * 209.99740 * 11 9 7 14 14 H 1.48506 * 109.47008 * 329.99465 * 11 9 7 15 15 C 1.55160 * 102.94268 * 141.61289 * 4 2 1 16 16 C 1.54910 * 101.58122 * 324.49825 * 15 4 2 17 17 N 1.47026 * 109.88236 * 238.99013 * 2 1 3 18 18 C 1.34771 * 125.65100 * 61.37105 * 17 2 1 19 19 O 1.21622 * 119.99946 * 0.02562 * 18 17 2 20 20 C 1.47314 * 120.00005 * 179.97438 * 18 17 2 21 21 C 1.36444 * 126.18894 * 179.97438 * 20 18 17 22 22 N 1.36136 * 106.76573 * 180.02562 * 21 20 18 23 23 C 1.40212 * 126.22089 * 179.97438 * 22 21 20 24 24 C 1.38827 * 120.06206 * 359.72943 * 23 22 21 25 25 C 1.38119 * 119.92875 * 179.70190 * 24 23 22 26 26 C 1.38278 * 120.07006 * 0.58936 * 25 24 23 27 27 C 1.38276 * 120.12798 * 359.68853 * 26 25 24 28 28 C 1.38129 * 120.06468 * 0.02562 * 27 26 25 29 29 C 1.36111 * 107.55926 * 0.02562 * 22 21 20 30 30 N 1.30155 * 109.00853 * 359.72650 * 29 22 21 31 31 H 1.09007 * 109.46732 * 179.56233 * 1 2 3 32 32 H 1.08995 * 109.47241 * 299.55336 * 1 2 3 33 33 H 1.08999 * 109.47140 * 59.56544 * 1 2 3 34 34 H 0.96996 * 120.00152 * 24.99578 * 6 4 2 35 35 H 0.96996 * 120.00228 * 180.02562 * 10 9 7 36 36 H 1.08991 * 111.00600 * 82.57442 * 15 4 2 37 37 H 1.09004 * 111.00084 * 206.38888 * 15 4 2 38 38 H 1.09001 * 110.36852 * 278.17238 * 16 15 4 39 39 H 1.08998 * 110.36449 * 155.84885 * 16 15 4 40 40 H 1.07999 * 126.61748 * 359.97438 * 21 20 18 41 41 H 1.07992 * 120.03301 * 359.97438 * 24 23 22 42 42 H 1.08007 * 119.96927 * 180.29879 * 25 24 23 43 43 H 1.07997 * 119.94128 * 179.70295 * 26 25 24 44 44 H 1.07996 * 119.97001 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.03084 * 180.02562 * 28 27 26 46 46 H 1.08002 * 125.49569 * 179.97438 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7512 1.2416 5 1 2.3530 -0.0489 2.0199 6 7 1.0473 -1.6881 1.7450 7 6 1.0608 -2.0661 3.0610 8 1 1.8145 -1.6740 3.7278 9 6 0.1058 -2.9534 3.5381 10 7 -0.8131 -3.4309 2.7256 11 14 0.1246 -3.4697 5.3332 12 1 -0.7097 -2.5320 6.1268 13 1 -0.4211 -4.8451 5.4585 14 1 1.5197 -3.4425 5.8416 15 6 3.2877 -1.5151 0.6901 16 6 2.8146 -1.8782 -0.7396 17 7 2.0300 -0.7123 -1.1850 18 6 1.8037 -0.3609 -2.4663 19 8 1.1343 0.6228 -2.7179 20 6 2.3681 -1.1678 -3.5620 21 6 2.2193 -0.9296 -4.8972 22 7 2.8988 -1.9125 -5.5496 23 6 3.0129 -2.0586 -6.9394 24 6 2.3931 -1.1508 -7.7874 25 6 2.5125 -1.2939 -9.1560 26 6 3.2382 -2.3469 -9.6818 27 6 3.8518 -3.2560 -8.8397 28 6 3.7409 -3.1147 -7.4701 29 6 3.4462 -2.7281 -4.6075 30 7 3.1340 -2.2803 -3.4259 31 1 -0.3633 -1.0277 -0.0079 32 1 -0.3633 0.5069 0.8939 33 1 -0.3633 0.5206 -0.8860 34 1 0.3706 -2.0405 1.1461 35 1 -1.4806 -4.0506 3.0591 36 1 4.1654 -0.8697 0.6590 37 1 3.4857 -2.4124 1.2765 38 1 2.1887 -2.7704 -0.7169 39 1 3.6717 -2.0317 -1.3952 40 1 1.6680 -0.1184 -5.3493 41 1 1.8220 -0.3312 -7.3773 42 1 2.0346 -0.5852 -9.8162 43 1 3.3262 -2.4595 -10.7523 44 1 4.4184 -4.0772 -9.2532 45 1 4.2208 -3.8248 -6.8129 46 1 4.0465 -3.6033 -4.8079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986296317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:42 Heat of formation + Delta-G solvation = 70.785326 kcal Electronic energy + Delta-G solvation = -28729.373085 eV Core-core repulsion = 24813.248885 eV Total energy + Delta-G solvation = -3916.124200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.55255 -41.10955 -39.96547 -38.74258 -35.78171 -35.23637 -33.29088 -32.32236 -32.19682 -31.01276 -30.77714 -29.91810 -26.71822 -25.79147 -25.19287 -24.50681 -23.62940 -22.33708 -21.94268 -20.96916 -20.15568 -19.38709 -19.21120 -17.76398 -17.51955 -16.95641 -16.87994 -16.43212 -16.20667 -15.91846 -15.67715 -15.58459 -15.30815 -15.11482 -14.70851 -14.68522 -14.29926 -14.27855 -14.09625 -13.83149 -13.76681 -13.21260 -12.96512 -12.86804 -12.66965 -12.52852 -12.37986 -12.23395 -12.08239 -12.04519 -11.78013 -11.70358 -11.47916 -11.26660 -11.00545 -10.85028 -10.05535 -10.01607 -9.61005 -9.32340 -8.97852 -7.89749 -5.18325 -0.26787 0.31576 0.72937 1.40829 1.44779 1.50414 1.51786 1.60046 2.06106 2.42511 2.59465 2.77503 3.21897 3.41318 3.52861 3.63862 3.75644 3.86862 3.90016 3.91847 4.08391 4.13639 4.23746 4.27966 4.35834 4.39139 4.41505 4.45519 4.61667 4.65822 4.76117 4.81317 4.84949 4.98162 5.01829 5.10860 5.17986 5.22776 5.34781 5.37143 5.41982 5.42938 5.50163 5.51164 5.58680 5.78843 6.12308 6.31020 6.53294 6.65066 7.14319 7.37841 8.11449 8.36104 9.33817 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002228 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.618292 B =12562.064488 C =13016.990118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 H 0.086 0.914 4 C 0.165 3.835 5 H 0.079 0.921 6 N -0.724 5.724 7 C -0.233 4.233 8 H 0.082 0.918 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.291 1.291 13 H -0.301 1.301 14 H -0.267 1.267 15 C -0.149 4.149 16 C 0.124 3.876 17 N -0.595 5.595 18 C 0.605 3.395 19 O -0.579 6.579 20 C -0.074 4.074 21 C 0.038 3.962 22 N -0.403 5.403 23 C 0.101 3.899 24 C -0.146 4.146 25 C -0.099 4.099 26 C -0.123 4.123 27 C -0.095 4.095 28 C -0.133 4.133 29 C 0.203 3.797 30 N -0.479 5.479 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.202 0.798 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.626 1.653 -28.116 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.026 3.974 3 H 0.104 0.896 4 C 0.055 3.945 5 H 0.097 0.903 6 N -0.365 5.365 7 C -0.365 4.365 8 H 0.100 0.900 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.218 1.218 13 H -0.228 1.228 14 H -0.191 1.191 15 C -0.190 4.190 16 C 0.002 3.998 17 N -0.326 5.326 18 C 0.395 3.605 19 O -0.461 6.461 20 C -0.201 4.201 21 C -0.099 4.099 22 N -0.080 5.080 23 C 0.010 3.990 24 C -0.165 4.165 25 C -0.117 4.117 26 C -0.141 4.141 27 C -0.113 4.113 28 C -0.152 4.152 29 C -0.080 4.080 30 N -0.197 5.197 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.209 0.791 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.123 0.877 40 H 0.219 0.781 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.169 0.831 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 13.555 1.828 -27.385 30.610 hybrid contribution -1.127 -0.225 0.380 1.211 sum 12.427 1.603 -27.005 29.770 Atomic orbital electron populations 1.21758 0.95498 1.00876 1.01207 1.21942 0.94365 0.96288 0.84824 0.89647 1.21413 0.89140 0.91339 0.92655 0.90290 1.42687 1.33544 1.52127 1.08107 1.19663 1.09864 1.19680 0.87258 0.89972 1.25545 0.98355 1.01246 1.01801 1.69845 1.19541 1.36957 1.35909 0.85139 0.77861 0.76435 0.80297 1.21805 1.22767 1.19122 1.23417 0.98734 1.01728 0.95076 1.22293 0.95268 0.86480 0.95726 1.48431 1.51183 1.28641 1.04348 1.16883 0.79355 0.83194 0.81046 1.90721 1.42364 1.29001 1.83968 1.20363 1.07993 0.99195 0.92541 1.22793 0.99788 0.95717 0.91560 1.43182 1.37601 1.21053 1.06119 1.18188 1.02343 0.99384 0.79100 1.21169 1.01304 0.99538 0.94525 1.21374 0.98054 0.98712 0.93562 1.21699 0.96455 0.94072 1.01874 1.21444 0.98421 0.99761 0.91690 1.21190 0.99760 0.96915 0.97369 1.26127 1.01352 0.99205 0.81341 1.70684 1.14431 1.09878 1.24695 0.94422 0.91848 0.92920 0.79068 0.94293 0.89304 0.90765 0.94290 0.87742 0.78133 0.85048 0.83012 0.82740 0.82189 0.83055 0.73020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.51 71.98 0.61 -5.08 16 2 C 0.13 5.00 3.43 45.34 0.16 5.15 16 3 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 4 C 0.16 6.61 3.48 46.18 0.16 6.77 16 5 H 0.08 3.02 8.09 -2.39 -0.02 3.00 16 6 N -0.72 -36.43 4.55 -317.33 -1.44 -37.87 16 7 C -0.23 -12.72 9.96 84.03 0.84 -11.88 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 10 N -0.97 -60.39 13.06 21.65 0.28 -60.10 16 11 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 C -0.15 -5.20 6.77 31.99 0.22 -4.98 16 16 C 0.12 4.47 6.12 86.86 0.53 5.00 16 17 N -0.60 -22.49 3.07 -792.02 -2.43 -24.92 16 18 C 0.61 23.02 7.63 86.63 0.66 23.68 16 19 O -0.58 -24.19 15.90 -4.10 -0.07 -24.25 16 20 C -0.07 -2.37 6.80 40.51 0.28 -2.09 16 21 C 0.04 0.97 10.57 83.61 0.88 1.85 16 22 N -0.40 -7.99 2.97 -349.77 -1.04 -9.03 16 23 C 0.10 1.52 6.63 38.08 0.25 1.77 16 24 C -0.15 -1.94 9.46 22.38 0.21 -1.73 16 25 C -0.10 -0.87 10.04 22.25 0.22 -0.64 16 26 C -0.12 -0.78 10.04 22.29 0.22 -0.56 16 27 C -0.09 -0.62 10.04 22.25 0.22 -0.40 16 28 C -0.13 -1.32 9.46 22.38 0.21 -1.11 16 29 C 0.20 4.05 11.88 180.02 2.14 6.19 16 30 N -0.48 -13.69 8.35 -188.62 -1.58 -15.26 16 31 H 0.04 1.78 6.20 -2.38 -0.01 1.77 16 32 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.05 2.20 6.86 -2.39 -0.02 2.18 16 34 H 0.37 20.87 5.67 -92.71 -0.53 20.35 16 35 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.10 3.42 6.13 -2.39 -0.01 3.41 16 40 H 0.20 4.33 7.11 -2.91 -0.02 4.31 16 41 H 0.13 1.67 6.78 -2.91 -0.02 1.65 16 42 H 0.15 0.68 8.06 -2.91 -0.02 0.65 16 43 H 0.15 0.19 8.06 -2.91 -0.02 0.16 16 44 H 0.16 0.18 8.06 -2.91 -0.02 0.15 16 45 H 0.15 0.83 6.74 -2.91 -0.02 0.82 16 46 H 0.25 2.51 7.03 -2.91 -0.02 2.49 16 Total: -1.00 -75.63 376.73 4.53 -71.10 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.49 Total: 33.93 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 8.29 Total: 17.96 kcal Atomic # 7 Polarization: -140.98 SS G_CDS: -6.20 Total: -147.18 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -75.63 4.53 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986296317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.886 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds