Wall clock time and date at job start Wed Apr 1 2020 00:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.00140 * 2 1 4 4 C 1.54318 * 109.88273 * 121.09860 * 2 1 3 5 5 H 1.09000 * 110.87346 * 260.04387 * 4 2 1 6 6 N 1.46500 * 110.72064 * 23.24629 * 4 2 1 7 7 C 1.36931 * 119.99902 * 263.59204 * 6 4 2 8 8 H 1.08002 * 120.00412 * 359.97438 * 7 6 4 9 9 C 1.38817 * 120.00023 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99708 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99997 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46712 * 179.97438 * 11 9 7 13 13 H 1.48502 * 109.46725 * 299.99453 * 11 9 7 14 14 H 1.48500 * 109.47269 * 59.99611 * 11 9 7 15 15 C 1.55162 * 102.94541 * 141.61009 * 4 2 1 16 16 C 1.54914 * 101.57852 * 324.50034 * 15 4 2 17 17 N 1.47025 * 109.88204 * 238.90489 * 2 1 3 18 18 C 1.34782 * 125.64424 * 61.67823 * 17 2 1 19 19 O 1.21513 * 120.00221 * 5.96946 * 18 17 2 20 20 C 1.48154 * 119.99729 * 185.96367 * 18 17 2 21 21 C 1.39961 * 120.89480 * 203.65117 * 20 18 17 22 22 C 1.38027 * 119.14223 * 179.79855 * 21 20 18 23 23 N 1.31859 * 120.98280 * 0.49158 * 22 21 20 24 24 C 1.32242 * 121.97001 * 359.73979 * 23 22 21 25 25 N 1.39793 * 119.62542 * 180.02562 * 24 23 22 26 26 C 1.36647 * 125.67701 * 179.71350 * 25 24 23 27 27 C 1.34812 * 108.19163 * 179.88527 * 26 25 24 28 28 C 1.40984 * 107.48359 * 0.37013 * 27 26 25 29 29 C 1.34801 * 107.48866 * 359.76622 * 28 27 26 30 30 C 1.38926 * 120.74641 * 0.02562 * 24 23 22 31 31 H 1.09004 * 109.47121 * 303.79047 * 1 2 3 32 32 H 1.09004 * 109.47384 * 63.78762 * 1 2 3 33 33 H 1.08994 * 109.47250 * 183.79093 * 1 2 3 34 34 H 0.96994 * 120.00145 * 83.59461 * 6 4 2 35 35 H 0.97000 * 119.99641 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00588 * 82.56824 * 15 4 2 37 37 H 1.08994 * 111.00475 * 206.38823 * 15 4 2 38 38 H 1.09002 * 110.36973 * 155.84799 * 16 15 4 39 39 H 1.09001 * 110.36171 * 278.16840 * 16 15 4 40 40 H 1.08001 * 120.42142 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.51099 * 180.20836 * 22 21 20 42 42 H 1.08000 * 125.90508 * 0.02562 * 26 25 24 43 43 H 1.07997 * 126.25835 * 180.14064 * 27 26 25 44 44 H 1.08006 * 126.25051 * 179.75144 * 28 27 26 45 45 H 1.07995 * 125.90541 * 180.02562 * 29 28 27 46 46 H 1.07999 * 120.52757 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2426 5 1 2.3525 -0.0483 2.0222 6 7 1.0471 -1.6856 1.7473 7 6 0.2214 -1.3143 2.7746 8 1 0.3132 -0.3316 3.2131 9 6 -0.7331 -2.2014 3.2532 10 7 -0.8447 -3.3991 2.7192 11 14 -1.8601 -1.6946 4.6541 12 1 -2.7830 -2.8125 4.9760 13 1 -1.0447 -1.3650 5.8507 14 1 -2.6486 -0.5033 4.2489 15 6 3.2876 -1.5143 0.6923 16 6 2.8145 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8084 -0.3612 -2.4657 19 8 1.2378 0.6813 -2.7190 20 6 2.2608 -1.2443 -3.5659 21 6 2.5010 -0.7320 -4.8461 22 6 2.9256 -1.5867 -5.8433 23 7 3.0968 -2.8727 -5.6077 24 6 2.8776 -3.4014 -4.4156 25 7 3.0753 -4.7715 -4.2203 26 6 2.8924 -5.4435 -3.0446 27 6 3.1797 -6.7439 -3.2540 28 6 3.5620 -6.8811 -4.6041 29 6 3.4893 -5.6606 -5.1718 30 6 2.4530 -2.6107 -3.3551 31 1 -0.3633 0.5716 0.8541 32 1 -0.3634 0.4539 -0.9220 33 1 -0.3633 -1.0254 0.0679 34 1 0.9649 -2.5683 1.3538 35 1 -1.5119 -4.0189 3.0534 36 1 4.1654 -0.8689 0.6603 37 1 3.4855 -2.4107 1.2799 38 1 3.6716 -2.0338 -1.3924 39 1 2.1886 -2.7714 -0.7130 40 1 2.3596 0.3191 -5.0499 41 1 3.1160 -1.1971 -6.8324 42 1 2.5708 -5.0085 -2.1099 43 1 3.1301 -7.5351 -2.5207 44 1 3.8590 -7.7968 -5.0939 45 1 3.7183 -5.4261 -6.2008 46 1 2.2747 -3.0463 -2.3831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986392521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:38 Heat of formation + Delta-G solvation = 96.475994 kcal Electronic energy + Delta-G solvation = -29663.290251 eV Core-core repulsion = 25748.280081 eV Total energy + Delta-G solvation = -3915.010169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92352 -40.57285 -39.41417 -37.56595 -34.31873 -33.55507 -33.09911 -31.47407 -30.82512 -29.56533 -29.14496 -28.75490 -25.64302 -24.95197 -24.03702 -23.40016 -22.54341 -21.07794 -20.35232 -19.99147 -19.14358 -18.16853 -17.52815 -16.87743 -16.60238 -16.21867 -16.08626 -15.52509 -14.94758 -14.75723 -14.40143 -14.04802 -13.96351 -13.69416 -13.66352 -13.60051 -13.43592 -12.99133 -12.76796 -12.70814 -12.49322 -12.30097 -12.01663 -11.68752 -11.45037 -11.01530 -10.92089 -10.74146 -10.65039 -10.36079 -10.27986 -10.20707 -10.16441 -10.05774 -9.76968 -9.69455 -9.04098 -8.49013 -8.40641 -8.38567 -7.13781 -5.89919 -3.20001 0.38517 0.53687 2.13297 2.37081 2.86397 2.88348 2.98223 3.37133 3.42566 3.43196 3.56669 3.95154 4.21305 4.46937 4.48722 4.57904 4.70725 4.82321 5.02610 5.07434 5.15554 5.16410 5.20163 5.30028 5.45142 5.46185 5.48846 5.52611 5.60474 5.71061 5.77229 5.95730 6.03204 6.08956 6.09770 6.14102 6.15414 6.29774 6.42457 6.54847 6.70828 6.71775 6.85400 6.87300 7.17304 7.25426 7.53666 7.58788 7.62785 8.15410 8.27152 9.39603 9.91253 10.26538 11.31873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.003430 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.575490 B = 8160.872279 C = 9792.903835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.108 3.892 3 H 0.064 0.936 4 C 0.171 3.829 5 H 0.078 0.922 6 N -0.707 5.707 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.006 4.006 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.285 1.285 15 C -0.146 4.146 16 C 0.095 3.905 17 N -0.593 5.593 18 C 0.568 3.432 19 O -0.530 6.530 20 C -0.047 4.047 21 C -0.139 4.139 22 C 0.130 3.870 23 N -0.494 5.494 24 C 0.348 3.652 25 N -0.396 5.396 26 C -0.013 4.013 27 C -0.179 4.179 28 C -0.197 4.197 29 C 0.009 3.991 30 C -0.164 4.164 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.168 0.832 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.547 -0.817 -14.705 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.003 3.997 3 H 0.082 0.918 4 C 0.058 3.942 5 H 0.096 0.904 6 N -0.346 5.346 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.202 4.202 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.185 4.185 16 C -0.028 4.028 17 N -0.325 5.325 18 C 0.355 3.645 19 O -0.407 6.407 20 C -0.058 4.058 21 C -0.160 4.160 22 C -0.027 4.027 23 N -0.207 5.207 24 C 0.120 3.880 25 N -0.071 5.071 26 C -0.138 4.138 27 C -0.203 4.203 28 C -0.221 4.221 29 C -0.117 4.117 30 C -0.187 4.187 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.219 0.781 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.170 0.830 41 H 0.189 0.811 42 H 0.187 0.813 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.185 0.815 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.331 -0.450 -15.414 19.136 hybrid contribution -1.041 0.349 1.186 1.616 sum 10.290 -0.102 -14.228 17.559 Atomic orbital electron populations 1.21816 0.93493 1.03975 1.00245 1.22851 0.96317 0.95669 0.84896 0.91768 1.21251 0.88401 0.92292 0.92263 0.90375 1.42321 1.37939 1.14398 1.39944 1.19144 1.10704 0.98824 1.08876 0.91045 1.24716 0.99627 0.96101 0.99791 1.69628 1.37385 1.06510 1.44151 0.86302 0.80583 0.77316 0.82177 1.21693 1.21188 1.21182 1.23205 0.98796 1.02119 0.94407 1.22616 0.94450 0.89020 0.96687 1.48528 1.50853 1.28254 1.04863 1.17675 0.80183 0.85263 0.81400 1.90774 1.42783 1.23997 1.83155 1.20328 0.97339 0.93047 0.95123 1.22267 0.99131 1.02710 0.91906 1.22538 0.94051 0.86521 0.99614 1.66832 1.17506 1.15440 1.20933 1.18121 0.95959 0.83736 0.90136 1.41473 1.51460 1.03575 1.10623 1.22018 1.09420 0.92668 0.89696 1.21074 1.06614 0.95428 0.97192 1.21067 1.08728 0.97029 0.95248 1.22021 1.05826 0.88488 0.95366 1.22289 1.01996 0.93593 1.00785 0.91640 0.94278 0.90613 0.78107 0.93302 0.90801 0.89136 0.91160 0.90902 0.82986 0.81063 0.81321 0.83674 0.84053 0.81466 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.19 37.16 0.30 -2.40 16 2 C 0.11 1.85 3.41 -66.96 -0.23 1.63 16 3 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.17 2.94 3.52 -66.10 -0.23 2.71 16 5 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 6 N -0.71 -15.34 3.65 -51.65 -0.19 -15.53 16 7 C -0.24 -6.09 8.79 -15.06 -0.13 -6.23 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 10 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 11 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 C -0.15 -1.97 6.69 -24.58 -0.16 -2.14 16 16 C 0.09 1.24 4.94 -2.53 -0.01 1.23 16 17 N -0.59 -9.19 3.06 -164.01 -0.50 -9.69 16 18 C 0.57 9.12 7.42 -12.19 -0.09 9.03 16 19 O -0.53 -10.00 15.91 5.35 0.09 -9.91 16 20 C -0.05 -0.62 5.70 -104.67 -0.60 -1.22 16 21 C -0.14 -1.53 9.68 -39.01 -0.38 -1.91 16 22 C 0.13 1.27 11.17 -17.62 -0.20 1.07 16 23 N -0.49 -5.92 9.80 -12.35 -0.12 -6.04 16 24 C 0.35 4.43 7.48 -154.45 -1.16 3.28 16 25 N -0.40 -4.95 2.97 -62.68 -0.19 -5.13 16 26 C -0.01 -0.15 10.72 -16.62 -0.18 -0.33 16 27 C -0.18 -1.99 10.86 -39.76 -0.43 -2.42 16 28 C -0.20 -2.11 10.86 -39.76 -0.43 -2.55 16 29 C 0.01 0.10 11.00 -16.62 -0.18 -0.08 16 30 C -0.16 -2.07 7.56 -38.82 -0.29 -2.36 16 31 H 0.06 1.33 7.80 -51.93 -0.41 0.92 16 32 H 0.04 0.77 6.98 -51.93 -0.36 0.41 16 33 H 0.07 1.69 7.08 -51.93 -0.37 1.32 16 34 H 0.38 8.94 7.84 -40.82 -0.32 8.62 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.78 6.84 -51.93 -0.36 0.43 16 39 H 0.07 0.97 6.87 -51.93 -0.36 0.62 16 40 H 0.15 1.50 7.91 -52.49 -0.42 1.08 16 41 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.17 1.73 6.98 -52.49 -0.37 1.37 16 43 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.17 1.68 8.04 -52.49 -0.42 1.26 16 46 H 0.16 1.90 3.32 -52.49 -0.17 1.73 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -30.63 375.26 -10.10 -40.73 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.05 Total: 11.97 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -4.50 Total: -2.95 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -0.27 Total: -61.72 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.63 -10.10 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986392521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.207 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds