Wall clock time and date at job start Wed Apr 1 2020 00:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.87117 * 2 1 4 4 C 1.54314 * 109.88618 * 121.17969 * 2 1 3 5 5 H 1.08995 * 110.72008 * 23.24731 * 4 2 1 6 6 N 1.46502 * 110.72158 * 259.97472 * 4 2 1 7 7 C 1.36940 * 119.99901 * 155.00171 * 6 4 2 8 8 H 1.07992 * 120.00381 * 359.97438 * 7 6 4 9 9 C 1.38815 * 119.99652 * 180.02562 * 7 6 4 10 10 N 1.31615 * 120.00157 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99912 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47216 * 59.99356 * 11 9 7 13 13 H 1.48493 * 109.47422 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47021 * 299.99613 * 11 9 7 15 15 C 1.55158 * 102.94500 * 141.60956 * 4 2 1 16 16 C 1.54909 * 101.58072 * 324.50184 * 15 4 2 17 17 N 1.47017 * 109.88130 * 238.99236 * 2 1 3 18 18 C 1.34778 * 125.65096 * 61.65931 * 17 2 1 19 19 O 1.21695 * 120.00125 * 357.79912 * 18 17 2 20 20 C 1.46664 * 119.99943 * 177.79933 * 18 17 2 21 21 C 1.37828 * 126.81671 * 187.71269 * 20 18 17 22 22 N 1.32968 * 107.99142 * 179.97438 * 21 20 18 23 23 C 1.31803 * 109.76865 * 359.97438 * 22 21 20 24 24 C 1.47826 * 125.50259 * 179.97438 * 23 22 21 25 25 C 1.39584 * 120.14023 * 179.74910 * 24 23 22 26 26 C 1.37960 * 119.84757 * 179.72393 * 25 24 23 27 27 C 1.38357 * 120.14670 * 0.57830 * 26 25 24 28 28 C 1.38358 * 120.29564 * 359.69201 * 27 26 25 29 29 C 1.37958 * 120.14668 * 0.02562 * 28 27 26 30 30 N 1.35903 * 108.98861 * 359.75405 * 23 22 21 31 31 H 0.96993 * 126.55917 * 180.28057 * 30 23 22 32 32 H 1.08998 * 109.47122 * 179.56171 * 1 2 3 33 33 H 1.09008 * 109.46901 * 299.55261 * 1 2 3 34 34 H 1.08997 * 109.47296 * 59.55313 * 1 2 3 35 35 H 0.96999 * 120.00127 * 334.99778 * 6 4 2 36 36 H 0.97001 * 119.99938 * 180.02562 * 10 9 7 37 37 H 1.08999 * 111.00750 * 206.42490 * 15 4 2 38 38 H 1.09001 * 111.00218 * 82.57493 * 15 4 2 39 39 H 1.09001 * 110.36352 * 278.17211 * 16 15 4 40 40 H 1.08999 * 110.36751 * 155.84478 * 16 15 4 41 41 H 1.08004 * 126.00976 * 359.94325 * 21 20 18 42 42 H 1.07999 * 120.07606 * 0.02562 * 25 24 23 43 43 H 1.08003 * 119.92543 * 180.29302 * 26 25 24 44 44 H 1.07998 * 119.85323 * 179.72420 * 27 26 25 45 45 H 1.07995 * 119.92944 * 180.02562 * 28 27 26 46 46 H 1.07994 * 120.08057 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0549 -0.7513 1.2415 5 1 1.3052 -1.4482 1.6160 6 7 2.4555 0.1928 2.2877 7 6 2.4584 -0.1998 3.5996 8 1 2.1649 -1.2051 3.8631 9 6 2.8375 0.6949 4.5909 10 7 3.1947 1.9203 4.2699 11 14 2.8407 0.1597 6.3806 12 1 3.7724 -0.9836 6.5537 13 1 3.2823 1.2912 7.2349 14 1 1.4705 -0.2542 6.7759 15 6 3.2877 -1.5152 0.6900 16 6 2.8146 -1.8782 -0.7397 17 7 2.0300 -0.7122 -1.1850 18 6 1.8082 -0.3577 -2.4662 19 8 1.1095 0.6062 -2.7187 20 6 2.4089 -1.1336 -3.5563 21 6 2.4003 -0.8170 -4.8977 22 7 3.0511 -1.7755 -5.5501 23 6 3.4751 -2.6866 -4.6972 24 6 4.2375 -3.9032 -5.0490 25 6 4.6364 -4.7936 -4.0508 26 6 5.3428 -5.9300 -4.3866 27 6 5.6663 -6.1820 -5.7080 28 6 5.2789 -5.3006 -6.7017 29 6 4.5671 -4.1634 -6.3802 30 7 3.1022 -2.3243 -3.4415 31 1 3.2855 -2.8093 -2.6218 32 1 -0.3633 -1.0276 -0.0079 33 1 -0.3633 0.5069 0.8940 34 1 -0.3634 0.5207 -0.8859 35 1 2.7188 1.0959 2.0511 36 1 3.4599 2.5454 4.9626 37 1 3.4853 -2.4128 1.2759 38 1 4.1655 -0.8697 0.6590 39 1 2.1886 -2.7703 -0.7170 40 1 3.6716 -2.0316 -1.3954 41 1 1.9445 0.0560 -5.3412 42 1 4.3883 -4.5958 -3.0184 43 1 5.6479 -6.6222 -3.6157 44 1 6.2234 -7.0708 -5.9650 45 1 5.5343 -5.5033 -7.7312 46 1 4.2649 -3.4765 -7.1568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987091663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:48 Heat of formation + Delta-G solvation = 74.459524 kcal Electronic energy + Delta-G solvation = -28680.599706 eV Core-core repulsion = 24764.634831 eV Total energy + Delta-G solvation = -3915.964875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.37795 -39.92145 -39.20770 -37.49948 -34.41884 -33.22745 -32.54696 -31.60690 -31.25678 -31.03937 -29.54914 -28.53004 -25.48150 -24.49837 -23.51442 -23.19908 -22.81012 -21.50552 -21.20528 -20.20600 -19.86156 -17.94134 -17.39620 -17.07968 -16.46714 -16.15190 -15.72651 -15.50853 -15.10719 -14.97707 -14.61201 -14.14891 -14.01632 -13.87584 -13.69145 -13.64113 -13.53090 -13.13848 -13.03062 -12.89668 -12.29141 -12.03041 -11.82728 -11.79847 -11.52979 -11.30151 -11.15303 -10.92312 -10.74330 -10.55748 -10.49271 -10.36502 -10.19991 -9.95463 -9.88479 -9.77782 -9.39082 -9.04553 -8.69379 -8.22302 -7.14379 -5.89869 -3.21410 0.36607 0.97560 1.40618 2.46861 2.64966 2.93996 3.25584 3.35557 3.40527 3.41889 3.51311 3.84455 4.29807 4.42841 4.47035 4.52013 4.65851 4.71486 4.75331 4.95733 5.00660 5.07540 5.11512 5.17501 5.27793 5.34073 5.37267 5.50538 5.56093 5.63597 5.64618 5.79178 5.92627 5.97356 5.98683 6.02275 6.07992 6.11657 6.30608 6.34599 6.41035 6.48588 6.51748 6.58284 6.75842 6.86227 7.45952 7.56536 7.63329 8.10141 8.26809 9.38509 9.91261 10.25983 11.31891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.002472 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.182437 B =11323.939984 C =12791.321859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.178 3.822 5 H 0.070 0.930 6 N -0.712 5.712 7 C -0.249 4.249 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.928 5.928 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C -0.154 4.154 16 C 0.085 3.915 17 N -0.607 5.607 18 C 0.606 3.394 19 O -0.523 6.523 20 C -0.067 4.067 21 C 0.069 3.931 22 N -0.478 5.478 23 C 0.264 3.736 24 C -0.019 4.019 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.110 4.110 28 C -0.119 4.119 29 C -0.074 4.074 30 N -0.549 5.549 31 H 0.424 0.576 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.387 0.613 36 H 0.258 0.742 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.189 0.811 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.129 0.871 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.235 -16.219 -19.660 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.066 3.934 5 H 0.088 0.912 6 N -0.352 5.352 7 C -0.380 4.380 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.575 5.575 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.211 1.211 15 C -0.196 4.196 16 C -0.039 4.039 17 N -0.340 5.340 18 C 0.394 3.606 19 O -0.399 6.399 20 C -0.184 4.184 21 C -0.087 4.087 22 N -0.196 5.196 23 C 0.004 3.996 24 C -0.021 4.021 25 C -0.129 4.129 26 C -0.133 4.133 27 C -0.128 4.128 28 C -0.137 4.137 29 C -0.094 4.094 30 N -0.159 5.159 31 H 0.271 0.729 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.221 0.779 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.206 0.794 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.912 -15.680 -20.452 25.935 hybrid contribution 0.223 -0.230 2.261 2.284 sum 3.135 -15.909 -18.191 24.369 Atomic orbital electron populations 1.22058 0.94506 1.01704 1.03043 1.22050 0.94765 0.97041 0.83792 0.90021 1.21224 0.93319 0.91665 0.87194 0.91223 1.42333 1.79159 1.11822 1.01868 1.19147 1.39047 0.96968 0.82830 0.91006 1.24784 1.01647 0.95823 0.98196 1.69650 1.50630 1.04629 1.32596 0.86247 0.77787 0.77286 0.84688 1.21177 1.21612 1.21110 1.23618 1.01917 1.02143 0.91903 1.22623 0.94052 0.89124 0.98096 1.48482 1.51980 1.28478 1.05092 1.16419 0.80584 0.83578 0.80054 1.90849 1.38574 1.27710 1.82769 1.21604 1.08007 0.91288 0.97522 1.22888 0.98940 0.98834 0.87991 1.70255 1.14743 1.02694 1.31953 1.21381 1.01126 0.96695 0.80375 1.17640 0.98974 0.90966 0.94509 1.21100 0.98882 0.94672 0.98253 1.21040 0.98498 0.96972 0.96821 1.21335 0.99127 0.99421 0.92944 1.21171 0.98369 0.94289 0.99851 1.21250 0.96072 0.97012 0.95070 1.44213 1.41911 1.19582 1.10233 0.72942 0.93115 0.90860 0.91715 0.77873 0.93197 0.90152 0.90299 0.91239 0.92154 0.79447 0.86350 0.85307 0.85606 0.85263 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.10 37.16 0.34 -2.17 16 2 C 0.13 2.15 3.22 -66.96 -0.22 1.94 16 3 H 0.08 1.57 7.72 -51.93 -0.40 1.17 16 4 C 0.18 3.21 3.14 -66.10 -0.21 3.00 16 5 H 0.07 1.25 7.80 -51.93 -0.41 0.84 16 6 N -0.71 -16.56 5.22 -51.66 -0.27 -16.83 16 7 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 10 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 11 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.15 -2.30 6.77 -24.58 -0.17 -2.47 16 16 C 0.08 1.02 5.53 -2.53 -0.01 1.00 16 17 N -0.61 -9.05 3.06 -164.55 -0.50 -9.55 16 18 C 0.61 9.57 7.62 -12.86 -0.10 9.47 16 19 O -0.52 -9.71 15.88 5.19 0.08 -9.63 16 20 C -0.07 -0.91 6.88 -81.71 -0.56 -1.48 16 21 C 0.07 0.92 11.70 -17.21 -0.20 0.72 16 22 N -0.48 -6.29 10.79 -10.76 -0.12 -6.41 16 23 C 0.26 3.08 7.74 -154.88 -1.20 1.88 16 24 C -0.02 -0.18 5.87 -104.97 -0.62 -0.80 16 25 C -0.11 -0.85 9.69 -39.18 -0.38 -1.23 16 26 C -0.12 -0.75 10.03 -39.64 -0.40 -1.15 16 27 C -0.11 -0.67 10.04 -39.49 -0.40 -1.07 16 28 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 29 C -0.07 -0.64 9.69 -39.18 -0.38 -1.02 16 30 N -0.55 -6.12 5.37 -7.13 -0.04 -6.16 16 31 H 0.42 3.79 4.46 -40.82 -0.18 3.61 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 34 H 0.06 1.09 6.81 -51.93 -0.35 0.73 16 35 H 0.39 9.79 7.57 -40.82 -0.31 9.48 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.61 5.48 -51.93 -0.28 0.33 16 41 H 0.19 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.12 0.72 7.14 -52.49 -0.37 0.35 16 43 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.14 1.19 7.82 -52.49 -0.41 0.78 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -31.72 380.66 -10.62 -42.34 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.07 Total: 11.83 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -5.14 Total: -1.46 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -0.20 Total: -65.19 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.72 -10.62 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987091663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.799 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds