Wall clock time and date at job start Wed Apr 1 2020 00:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99858 * 2 1 4 4 C 1.54334 * 109.99233 * 238.95604 * 2 1 3 5 5 H 1.08997 * 110.99654 * 100.13025 * 4 2 1 6 6 N 1.46497 * 110.51463 * 336.98226 * 4 2 1 7 7 C 1.36940 * 120.00089 * 96.45043 * 6 4 2 8 8 H 1.08003 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00125 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99687 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00015 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47126 * 89.99861 * 11 9 7 13 13 H 1.48501 * 109.47123 * 209.99575 * 11 9 7 14 14 H 1.48504 * 109.47136 * 330.00033 * 11 9 7 15 15 C 1.55157 * 103.02169 * 218.66778 * 4 2 1 16 16 C 1.54913 * 101.57956 * 35.31194 * 15 4 2 17 17 N 1.47028 * 109.87695 * 121.09205 * 2 1 3 18 18 C 1.34773 * 125.64913 * 298.39707 * 17 2 1 19 19 O 1.21556 * 119.99875 * 353.88470 * 18 17 2 20 20 C 1.47860 * 120.00226 * 173.89215 * 18 17 2 21 21 C 1.39618 * 120.11612 * 155.51988 * 20 18 17 22 22 C 1.37973 * 119.98878 * 180.02562 * 21 20 18 23 23 C 1.38256 * 120.21712 * 359.97438 * 22 21 20 24 24 C 1.38916 * 120.23134 * 0.02562 * 23 22 21 25 25 N 1.40211 * 120.00143 * 179.97438 * 24 23 22 26 26 C 1.35222 * 126.04924 * 4.71063 * 25 24 23 27 27 C 1.35317 * 107.70963 * 179.83870 * 26 25 24 28 28 C 1.39915 * 107.93377 * 0.43150 * 27 26 25 29 29 N 1.30876 * 108.24444 * 359.72959 * 28 27 26 30 30 C 1.38606 * 120.00230 * 359.67747 * 24 23 22 31 31 H 1.08999 * 109.47350 * 295.44929 * 1 2 3 32 32 H 1.09010 * 109.46748 * 55.44909 * 1 2 3 33 33 H 1.09003 * 109.47344 * 175.44360 * 1 2 3 34 34 H 0.96999 * 120.00062 * 276.44167 * 6 4 2 35 35 H 0.97005 * 119.99473 * 180.02562 * 10 9 7 36 36 H 1.08994 * 111.00289 * 277.24009 * 15 4 2 37 37 H 1.08998 * 111.03714 * 153.39832 * 15 4 2 38 38 H 1.09004 * 110.36609 * 204.15464 * 16 15 4 39 39 H 1.08991 * 110.46295 * 81.87573 * 16 15 4 40 40 H 1.08000 * 120.00340 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.89054 * 179.97438 * 22 21 20 42 42 H 1.08009 * 119.88810 * 180.02562 * 23 22 21 43 43 H 1.08001 * 126.14220 * 0.02562 * 26 25 24 44 44 H 1.08002 * 126.03243 * 180.15790 * 27 26 25 45 45 H 1.08006 * 125.88039 * 179.75877 * 28 27 26 46 46 H 1.08004 * 120.10420 * 180.32557 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 2.3594 -0.0474 -2.0212 6 7 1.0465 -1.6790 -1.7492 7 6 0.2239 -1.3035 -2.7776 8 1 0.3204 -0.3207 -3.2149 9 6 -0.7339 -2.1859 -3.2580 10 7 -0.8510 -3.3838 -2.7253 11 14 -1.8555 -1.6739 -4.6612 12 1 -1.2272 -2.0402 -5.9560 13 1 -3.1611 -2.3692 -4.5303 14 1 -2.0697 -0.2051 -4.6130 15 6 3.2864 -1.5185 -0.6913 16 6 2.8098 -1.8826 0.7370 17 7 2.0299 -0.7140 1.1840 18 6 1.8072 -0.3620 2.4658 19 8 1.2375 0.6815 2.7192 20 6 2.2559 -1.2448 3.5637 21 6 2.5064 -0.7149 4.8309 22 6 2.9256 -1.5411 5.8534 23 6 3.0984 -2.8942 5.6281 24 6 2.8518 -3.4311 4.3709 25 7 3.0292 -4.8039 4.1477 26 6 3.3473 -5.7275 5.0827 27 6 3.4216 -6.9294 4.4654 28 6 3.1496 -6.7336 3.1070 29 7 2.9143 -5.4605 2.9156 30 6 2.4245 -2.6107 3.3386 31 1 -0.3634 0.4416 0.9279 32 1 -0.3633 0.5829 -0.8465 33 1 -0.3634 -1.0244 -0.0816 34 1 0.9597 -2.5616 -1.3563 35 1 -1.5201 -4.0006 -3.0613 36 1 4.1669 -0.8770 -0.6576 37 1 3.4814 -2.4157 -1.2787 38 1 3.6654 -2.0412 1.3935 39 1 2.1805 -2.7722 0.7135 40 1 2.3729 0.3417 5.0105 41 1 3.1193 -1.1294 6.8328 42 1 3.4264 -3.5361 6.4325 43 1 3.5097 -5.5401 6.1338 44 1 3.6546 -7.8726 4.9372 45 1 3.1357 -7.5011 2.3472 46 1 2.2273 -3.0273 2.3618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987189290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:55 Heat of formation + Delta-G solvation = 110.889165 kcal Electronic energy + Delta-G solvation = -29616.509498 eV Core-core repulsion = 25702.124330 eV Total energy + Delta-G solvation = -3914.385167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71428 -40.34073 -38.75895 -37.29863 -34.10080 -33.68204 -32.21690 -31.14149 -30.63207 -30.28050 -29.14599 -28.64608 -25.40089 -24.44783 -23.68749 -23.31440 -22.35489 -21.22174 -20.78465 -19.91275 -18.91837 -17.91294 -17.40268 -16.67022 -16.37657 -15.98233 -15.61975 -15.42391 -14.79983 -14.53320 -14.48070 -14.02441 -13.89754 -13.68500 -13.52119 -13.45491 -13.02726 -12.96621 -12.79492 -12.62931 -12.40438 -11.95896 -11.71435 -11.53314 -11.29330 -10.90547 -10.88508 -10.83065 -10.61715 -10.52854 -10.40620 -10.12831 -10.04169 -9.71737 -9.59968 -9.36699 -9.24734 -8.95601 -8.33255 -8.21279 -7.03415 -5.81022 -3.10765 0.49515 0.82048 1.91103 2.15560 2.59931 2.92236 3.24254 3.41862 3.47982 3.49052 3.66595 4.18655 4.40475 4.54436 4.55869 4.63391 4.77596 4.96643 4.97412 5.04754 5.15995 5.27859 5.35771 5.40157 5.41764 5.57502 5.60747 5.70095 5.74038 5.75597 5.87494 5.91840 6.02216 6.10562 6.13500 6.23255 6.30937 6.34765 6.41762 6.45003 6.58667 6.67342 6.83538 6.92718 7.01763 7.37800 7.43741 7.67094 7.84929 8.35674 8.39509 9.48260 10.01672 10.37077 11.40854 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003472 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.960903 B = 8062.645442 C = 9740.497004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 H 0.062 0.938 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.281 1.281 15 C -0.146 4.146 16 C 0.099 3.901 17 N -0.595 5.595 18 C 0.568 3.432 19 O -0.539 6.539 20 C -0.098 4.098 21 C -0.075 4.075 22 C -0.102 4.102 23 C -0.124 4.124 24 C 0.150 3.850 25 N -0.323 5.323 26 C 0.049 3.951 27 C -0.262 4.262 28 C 0.056 3.944 29 N -0.280 5.280 30 C -0.097 4.097 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.176 0.824 44 H 0.153 0.847 45 H 0.191 0.809 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.728 -3.286 18.368 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.004 3.996 3 H 0.080 0.920 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.204 4.204 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.024 4.024 17 N -0.327 5.327 18 C 0.356 3.644 19 O -0.418 6.418 20 C -0.102 4.102 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.145 4.145 24 C 0.058 3.942 25 N -0.099 5.099 26 C -0.094 4.094 27 C -0.291 4.291 28 C -0.132 4.132 29 N -0.099 5.099 30 C -0.117 4.117 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.150 0.850 43 H 0.193 0.807 44 H 0.171 0.829 45 H 0.208 0.792 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.984 -1.693 17.536 21.307 hybrid contribution -0.520 -0.973 0.100 1.107 sum 11.464 -2.666 17.636 21.203 Atomic orbital electron populations 1.21815 0.93659 1.03973 1.00053 1.22779 0.96188 0.95548 0.85131 0.91998 1.21255 0.88450 0.92258 0.92251 0.90542 1.42354 1.37807 1.14704 1.39840 1.19198 1.10507 0.98833 1.08662 0.91039 1.24717 0.99705 0.96174 0.99834 1.69659 1.37268 1.06676 1.44060 0.86232 0.80290 0.77670 0.82237 1.21726 1.21836 1.20706 1.23188 0.98624 1.01898 0.94795 1.22578 0.94634 0.88935 0.96224 1.48528 1.51180 1.28117 1.04923 1.17769 0.79809 0.85306 0.81470 1.90754 1.43302 1.24442 1.83323 1.19951 1.02130 0.93053 0.95058 1.21325 0.96006 1.01091 0.91004 1.20902 0.99456 0.92125 0.99537 1.20939 1.02494 0.96314 0.94767 1.17406 1.02175 0.79673 0.94912 1.45926 1.52451 1.05006 1.06471 1.22598 1.01272 0.89113 0.96373 1.21609 1.14664 0.98451 0.94348 1.24153 0.97964 0.93923 0.97122 1.77603 1.23423 1.07374 1.01464 1.21689 0.97369 0.92326 1.00297 0.94288 0.91857 0.90595 0.78019 0.93447 0.91001 0.89329 0.91284 0.90626 0.84245 0.84347 0.85021 0.80688 0.82917 0.79212 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.20 37.16 0.30 -2.59 16 2 C 0.11 2.05 3.40 -66.94 -0.23 1.82 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.17 3.21 3.54 -66.09 -0.23 2.97 16 5 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 6 N -0.71 -16.47 3.63 -51.65 -0.19 -16.66 16 7 C -0.24 -6.29 8.80 -15.06 -0.13 -6.42 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 10 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 11 Si 0.90 21.95 29.55 -169.99 -5.02 16.93 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C -0.15 -2.25 6.70 -24.58 -0.16 -2.41 16 16 C 0.10 1.53 4.93 -2.52 -0.01 1.52 16 17 N -0.60 -10.33 3.06 -164.10 -0.50 -10.83 16 18 C 0.57 10.05 7.37 -12.32 -0.09 9.96 16 19 O -0.54 -10.97 15.83 5.32 0.08 -10.89 16 20 C -0.10 -1.43 5.66 -104.99 -0.59 -2.02 16 21 C -0.07 -0.88 9.59 -39.16 -0.38 -1.26 16 22 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 23 C -0.12 -1.14 9.45 -39.32 -0.37 -1.52 16 24 C 0.15 1.85 6.67 -83.64 -0.56 1.29 16 25 N -0.32 -3.98 3.80 -10.73 -0.04 -4.03 16 26 C 0.05 0.45 10.79 -17.10 -0.18 0.26 16 27 C -0.26 -2.33 10.80 -39.99 -0.43 -2.76 16 28 C 0.06 0.60 12.03 -17.33 -0.21 0.39 16 29 N -0.28 -3.90 11.88 30.64 0.36 -3.54 16 30 C -0.10 -1.37 7.69 -38.99 -0.30 -1.67 16 31 H 0.04 0.82 6.96 -51.93 -0.36 0.46 16 32 H 0.06 1.36 7.83 -51.92 -0.41 0.95 16 33 H 0.08 1.81 7.04 -51.93 -0.37 1.45 16 34 H 0.39 9.69 7.84 -40.82 -0.32 9.37 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 0.95 6.85 -51.93 -0.36 0.59 16 39 H 0.08 1.28 6.81 -51.93 -0.35 0.92 16 40 H 0.14 1.57 7.84 -52.49 -0.41 1.16 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.79 6.74 -52.48 -0.35 0.44 16 43 H 0.18 0.93 7.06 -52.49 -0.37 0.56 16 44 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.19 1.49 8.06 -52.48 -0.42 1.07 16 46 H 0.16 2.46 4.26 -52.48 -0.22 2.24 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -32.88 375.30 -9.03 -41.90 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -6.02 Total: 11.95 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -4.08 Total: -4.06 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: 0.36 Total: -61.49 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -9.03 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987189290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.790 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds