Wall clock time and date at job start Wed Apr 1 2020 00:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99858 * 2 1 4 4 C 1.54334 * 109.99233 * 238.95604 * 2 1 3 5 5 H 1.08997 * 110.99654 * 100.13025 * 4 2 1 6 6 N 1.46497 * 110.51463 * 336.98226 * 4 2 1 7 7 C 1.36940 * 120.00089 * 96.45043 * 6 4 2 8 8 H 1.08003 * 119.99738 * 359.97438 * 7 6 4 9 9 C 1.38811 * 120.00125 * 179.97438 * 7 6 4 10 10 N 1.31618 * 119.99687 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00015 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47126 * 89.99861 * 11 9 7 13 13 H 1.48501 * 109.47123 * 209.99575 * 11 9 7 14 14 H 1.48504 * 109.47136 * 330.00033 * 11 9 7 15 15 C 1.55157 * 103.02169 * 218.66778 * 4 2 1 16 16 C 1.54913 * 101.57956 * 35.31194 * 15 4 2 17 17 N 1.47028 * 109.87695 * 121.09205 * 2 1 3 18 18 C 1.34773 * 125.64913 * 298.39707 * 17 2 1 19 19 O 1.21556 * 119.99875 * 353.88470 * 18 17 2 20 20 C 1.47860 * 120.00226 * 173.89215 * 18 17 2 21 21 C 1.39618 * 120.11612 * 155.51988 * 20 18 17 22 22 C 1.37973 * 119.98878 * 180.02562 * 21 20 18 23 23 C 1.38256 * 120.21712 * 359.97438 * 22 21 20 24 24 C 1.38916 * 120.23134 * 0.02562 * 23 22 21 25 25 N 1.40211 * 120.00143 * 179.97438 * 24 23 22 26 26 C 1.35222 * 126.04924 * 4.71063 * 25 24 23 27 27 C 1.35317 * 107.70963 * 179.83870 * 26 25 24 28 28 C 1.39915 * 107.93377 * 0.43150 * 27 26 25 29 29 N 1.30876 * 108.24444 * 359.72959 * 28 27 26 30 30 C 1.38606 * 120.00230 * 359.67747 * 24 23 22 31 31 H 1.08999 * 109.47350 * 295.44929 * 1 2 3 32 32 H 1.09010 * 109.46748 * 55.44909 * 1 2 3 33 33 H 1.09003 * 109.47344 * 175.44360 * 1 2 3 34 34 H 0.96999 * 120.00062 * 276.44167 * 6 4 2 35 35 H 0.97005 * 119.99473 * 180.02562 * 10 9 7 36 36 H 1.08994 * 111.00289 * 277.24009 * 15 4 2 37 37 H 1.08998 * 111.03714 * 153.39832 * 15 4 2 38 38 H 1.09004 * 110.36609 * 204.15464 * 16 15 4 39 39 H 1.08991 * 110.46295 * 81.87573 * 16 15 4 40 40 H 1.08000 * 120.00340 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.89054 * 179.97438 * 22 21 20 42 42 H 1.08009 * 119.88810 * 180.02562 * 23 22 21 43 43 H 1.08001 * 126.14220 * 0.02562 * 26 25 24 44 44 H 1.08002 * 126.03243 * 180.15790 * 27 26 25 45 45 H 1.08006 * 125.88039 * 179.75877 * 28 27 26 46 46 H 1.08004 * 120.10420 * 180.32557 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7479 -1.2426 5 1 2.3594 -0.0474 -2.0212 6 7 1.0465 -1.6790 -1.7492 7 6 0.2239 -1.3035 -2.7776 8 1 0.3204 -0.3207 -3.2149 9 6 -0.7339 -2.1859 -3.2580 10 7 -0.8510 -3.3838 -2.7253 11 14 -1.8555 -1.6739 -4.6612 12 1 -1.2272 -2.0402 -5.9560 13 1 -3.1611 -2.3692 -4.5303 14 1 -2.0697 -0.2051 -4.6130 15 6 3.2864 -1.5185 -0.6913 16 6 2.8098 -1.8826 0.7370 17 7 2.0299 -0.7140 1.1840 18 6 1.8072 -0.3620 2.4658 19 8 1.2375 0.6815 2.7192 20 6 2.2559 -1.2448 3.5637 21 6 2.5064 -0.7149 4.8309 22 6 2.9256 -1.5411 5.8534 23 6 3.0984 -2.8942 5.6281 24 6 2.8518 -3.4311 4.3709 25 7 3.0292 -4.8039 4.1477 26 6 3.3473 -5.7275 5.0827 27 6 3.4216 -6.9294 4.4654 28 6 3.1496 -6.7336 3.1070 29 7 2.9143 -5.4605 2.9156 30 6 2.4245 -2.6107 3.3386 31 1 -0.3634 0.4416 0.9279 32 1 -0.3633 0.5829 -0.8465 33 1 -0.3634 -1.0244 -0.0816 34 1 0.9597 -2.5616 -1.3563 35 1 -1.5201 -4.0006 -3.0613 36 1 4.1669 -0.8770 -0.6576 37 1 3.4814 -2.4157 -1.2787 38 1 3.6654 -2.0412 1.3935 39 1 2.1805 -2.7722 0.7135 40 1 2.3729 0.3417 5.0105 41 1 3.1193 -1.1294 6.8328 42 1 3.4264 -3.5361 6.4325 43 1 3.5097 -5.5401 6.1338 44 1 3.6546 -7.8726 4.9372 45 1 3.1357 -7.5011 2.3472 46 1 2.2273 -3.0273 2.3618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987189290.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:53 Heat of formation + Delta-G solvation = 91.004005 kcal Electronic energy + Delta-G solvation = -29617.371783 eV Core-core repulsion = 25702.124330 eV Total energy + Delta-G solvation = -3915.247453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.50553 -41.60457 -39.84096 -38.71613 -35.86593 -34.54563 -33.67199 -32.57832 -31.99946 -31.20205 -30.27589 -29.96909 -27.00828 -25.63877 -25.30357 -24.43779 -23.48714 -22.31854 -21.58147 -21.08030 -20.22038 -19.43613 -18.84961 -17.90426 -17.46496 -17.22213 -16.66403 -16.46864 -16.24788 -15.71649 -15.55116 -15.50435 -15.30632 -15.01973 -14.83680 -14.54683 -14.36905 -14.24049 -13.86985 -13.65893 -13.61189 -13.20371 -13.08482 -12.81603 -12.80603 -12.72675 -12.45839 -12.33125 -12.19972 -11.83136 -11.75007 -11.60024 -11.55689 -11.39121 -11.07112 -10.92210 -10.16660 -10.13572 -9.71164 -9.10192 -9.02117 -7.92356 -5.20468 -0.37650 -0.07929 1.12073 1.39802 1.47633 1.48507 1.56111 1.74451 1.88825 1.91682 2.56431 2.68942 3.21364 3.39745 3.56459 3.61287 3.77994 3.85181 3.90905 3.98569 4.07473 4.10143 4.16204 4.24671 4.31743 4.34334 4.46245 4.50767 4.63768 4.67654 4.75749 4.77011 4.80111 4.92710 5.03790 5.05585 5.09831 5.16265 5.18970 5.21479 5.25027 5.44556 5.50686 5.55181 5.57481 5.72073 6.19166 6.27826 6.46624 6.66413 7.00635 7.35838 8.07290 8.31715 9.30628 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011492 B = 0.003472 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.960903 B = 8062.645442 C = 9740.497004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.113 3.887 3 H 0.072 0.928 4 C 0.165 3.835 5 H 0.086 0.914 6 N -0.716 5.716 7 C -0.228 4.228 8 H 0.079 0.921 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.963 3.037 12 H -0.287 1.287 13 H -0.302 1.302 14 H -0.271 1.271 15 C -0.132 4.132 16 C 0.110 3.890 17 N -0.598 5.598 18 C 0.562 3.438 19 O -0.575 6.575 20 C -0.121 4.121 21 C -0.080 4.080 22 C -0.083 4.083 23 C -0.105 4.105 24 C 0.138 3.862 25 N -0.337 5.337 26 C 0.051 3.949 27 C -0.264 4.264 28 C 0.047 3.953 29 N -0.341 5.341 30 C -0.115 4.115 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.373 0.627 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.141 0.859 41 H 0.184 0.816 42 H 0.176 0.824 43 H 0.219 0.781 44 H 0.184 0.816 45 H 0.207 0.793 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.999 -3.381 21.247 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.008 3.992 3 H 0.090 0.910 4 C 0.054 3.946 5 H 0.104 0.896 6 N -0.353 5.353 7 C -0.360 4.360 8 H 0.097 0.903 9 C -0.262 4.262 10 N -0.618 5.618 11 Si 0.793 3.207 12 H -0.214 1.214 13 H -0.229 1.229 14 H -0.196 1.196 15 C -0.171 4.171 16 C -0.013 4.013 17 N -0.329 5.329 18 C 0.353 3.647 19 O -0.457 6.457 20 C -0.125 4.125 21 C -0.100 4.100 22 C -0.101 4.101 23 C -0.126 4.126 24 C 0.046 3.954 25 N -0.114 5.114 26 C -0.090 4.090 27 C -0.292 4.292 28 C -0.140 4.140 29 N -0.160 5.160 30 C -0.136 4.136 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.057 0.943 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.159 0.841 41 H 0.201 0.799 42 H 0.193 0.807 43 H 0.236 0.764 44 H 0.201 0.799 45 H 0.224 0.776 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.303 -1.768 20.418 24.992 hybrid contribution -1.164 -0.969 -0.651 1.649 sum 13.140 -2.737 19.767 23.893 Atomic orbital electron populations 1.21617 0.95714 1.01376 0.99273 1.22559 0.94373 0.96282 0.86032 0.90988 1.21466 0.88665 0.92112 0.92355 0.89607 1.42458 1.38607 1.14875 1.39409 1.19548 1.09774 0.98575 1.08118 0.90342 1.25412 1.01738 0.96485 1.02552 1.69815 1.38250 1.07835 1.45901 0.85287 0.78065 0.77569 0.79741 1.21386 1.22947 1.19630 1.23130 0.98015 1.01892 0.94038 1.22518 0.94584 0.87478 0.96670 1.48556 1.51303 1.28309 1.04757 1.18384 0.78968 0.85290 0.82061 1.90713 1.44907 1.26141 1.83899 1.19725 1.04853 0.92738 0.95134 1.21512 0.96115 1.01768 0.90600 1.21372 0.96849 0.91580 1.00276 1.21443 0.99984 0.96894 0.94239 1.17672 1.02258 0.79842 0.95635 1.46036 1.53335 1.05297 1.06702 1.23391 0.99537 0.88383 0.97729 1.22032 1.13948 0.99827 0.93352 1.24666 0.96912 0.93485 0.98918 1.77563 1.25940 1.08978 1.03495 1.21457 0.99245 0.92516 1.00348 0.95010 0.92551 0.93923 0.79453 0.94299 0.87818 0.89453 0.89274 0.92775 0.84106 0.79900 0.80701 0.76419 0.79916 0.77623 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.20 71.98 0.59 -4.79 16 2 C 0.11 4.34 3.40 45.35 0.15 4.50 16 3 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 4 C 0.16 6.23 3.54 46.18 0.16 6.39 16 5 H 0.09 3.10 8.06 -2.39 -0.02 3.08 16 6 N -0.72 -34.33 3.63 -317.32 -1.15 -35.48 16 7 C -0.23 -12.14 8.80 84.03 0.74 -11.40 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 10 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 11 Si 0.96 46.15 29.55 68.60 2.03 48.18 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 14 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 15 C -0.13 -4.01 6.70 31.99 0.21 -3.79 16 16 C 0.11 3.49 4.93 86.86 0.43 3.91 16 17 N -0.60 -21.37 3.06 -791.36 -2.42 -23.80 16 18 C 0.56 20.53 7.37 86.79 0.64 21.17 16 19 O -0.57 -24.15 15.83 -3.89 -0.06 -24.21 16 20 C -0.12 -3.54 5.66 -20.10 -0.11 -3.66 16 21 C -0.08 -1.77 9.59 22.54 0.22 -1.55 16 22 C -0.08 -1.12 10.02 22.21 0.22 -0.90 16 23 C -0.11 -1.49 9.45 22.44 0.21 -1.28 16 24 C 0.14 3.18 6.67 38.05 0.25 3.43 16 25 N -0.34 -7.87 3.80 -187.86 -0.71 -8.58 16 26 C 0.05 0.77 10.79 83.50 0.90 1.67 16 27 C -0.26 -4.00 10.80 22.00 0.24 -3.77 16 28 C 0.05 0.99 12.03 85.24 1.03 2.01 16 29 N -0.34 -9.66 11.88 -56.97 -0.68 -10.34 16 30 C -0.12 -3.32 7.69 22.65 0.17 -3.15 16 31 H 0.03 1.41 6.96 -2.39 -0.02 1.39 16 32 H 0.06 2.50 7.83 -2.38 -0.02 2.48 16 33 H 0.04 2.15 7.04 -2.39 -0.02 2.13 16 34 H 0.37 19.73 7.84 -92.71 -0.73 19.00 16 35 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.09 2.48 6.85 -2.39 -0.02 2.47 16 39 H 0.05 1.98 6.81 -2.39 -0.02 1.96 16 40 H 0.14 3.00 7.84 -2.91 -0.02 2.98 16 41 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 42 H 0.18 0.94 6.74 -2.91 -0.02 0.92 16 43 H 0.22 1.07 7.06 -2.91 -0.02 1.05 16 44 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.21 3.21 8.06 -2.91 -0.02 3.19 16 46 H 0.13 4.47 4.26 -2.91 -0.01 4.45 16 Total: -1.00 -76.76 375.30 4.10 -72.66 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.29 Total: 34.78 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 6.52 Total: 5.35 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -4.68 Total: -136.77 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.21 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.76 4.10 -72.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987189290.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.663 kcal (2) G-P(sol) polarization free energy of solvation -76.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds