Wall clock time and date at job start Wed Apr 1 2020 00:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.99963 * 2 1 4 4 C 1.54326 * 109.88541 * 121.09718 * 2 1 3 5 5 H 1.09008 * 110.71692 * 23.06541 * 4 2 1 6 6 N 1.46505 * 110.71951 * 259.97410 * 4 2 1 7 7 C 1.36932 * 119.99877 * 157.43386 * 6 4 2 8 8 H 1.08001 * 120.00133 * 0.02562 * 7 6 4 9 9 C 1.38810 * 120.00073 * 180.02562 * 7 6 4 10 10 N 1.31627 * 119.99973 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00317 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47279 * 180.02562 * 11 9 7 13 13 H 1.48498 * 109.46965 * 299.99528 * 11 9 7 14 14 H 1.48492 * 109.47406 * 59.99869 * 11 9 7 15 15 C 1.55148 * 103.10424 * 141.52169 * 4 2 1 16 16 C 1.54909 * 101.58444 * 324.58488 * 15 4 2 17 17 N 1.47324 * 110.06341 * 238.82863 * 2 1 3 18 18 C 1.34773 * 125.61499 * 61.67978 * 17 2 1 19 19 O 1.21574 * 120.00189 * 356.60615 * 18 17 2 20 20 C 1.47652 * 119.99723 * 176.61314 * 18 17 2 21 21 C 1.40248 * 120.49264 * 206.51853 * 20 18 17 22 22 C 1.38008 * 118.35962 * 179.73328 * 21 20 18 23 23 C 1.39189 * 119.25165 * 0.55782 * 22 21 20 24 24 N 1.39410 * 119.52689 * 179.67909 * 23 22 21 25 25 C 1.36715 * 125.68836 * 359.71306 * 24 23 22 26 26 C 1.34775 * 108.18546 * 179.83196 * 25 24 23 27 27 C 1.41027 * 107.49919 * 0.42477 * 26 25 24 28 28 C 1.34774 * 107.50097 * 359.73603 * 27 26 25 29 29 N 1.32448 * 120.93797 * 359.70183 * 23 22 21 30 30 C 1.31636 * 121.80303 * 359.97438 * 29 23 22 31 31 H 1.09003 * 109.47143 * 298.90498 * 1 2 3 32 32 H 1.09001 * 109.47209 * 58.90326 * 1 2 3 33 33 H 1.09001 * 109.47255 * 178.90167 * 1 2 3 34 34 H 0.97003 * 119.99743 * 337.44041 * 6 4 2 35 35 H 0.96993 * 120.00170 * 180.02562 * 10 9 7 36 36 H 1.08995 * 111.00916 * 82.66367 * 15 4 2 37 37 H 1.09008 * 111.00108 * 206.51549 * 15 4 2 38 38 H 1.09000 * 110.36814 * 155.85092 * 16 15 4 39 39 H 1.09000 * 110.36695 * 278.17862 * 16 15 4 40 40 H 1.08002 * 120.82215 * 359.97151 * 21 20 18 41 41 H 1.07990 * 120.37263 * 180.26112 * 22 21 20 42 42 H 1.07997 * 125.90936 * 359.97438 * 25 24 23 43 43 H 1.07998 * 126.25048 * 180.16085 * 26 25 24 44 44 H 1.07999 * 126.24874 * 179.73442 * 27 26 25 45 45 H 1.07997 * 125.90520 * 179.97438 * 28 27 26 46 46 H 1.08000 * 119.68420 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 1 1.3039 -1.4437 1.6201 6 7 2.4555 0.1961 2.2875 7 6 2.5063 -0.2089 3.5946 8 1 2.2514 -1.2256 3.8552 9 6 2.8853 0.6871 4.5846 10 7 3.1955 1.9263 4.2671 11 14 2.9553 0.1345 6.3676 12 1 3.3845 1.2711 7.2217 13 1 1.6101 -0.3257 6.7963 14 1 3.9263 -0.9809 6.5024 15 6 3.2869 -1.5177 0.6958 16 6 2.8161 -1.8831 -0.7341 17 7 2.0353 -0.7163 -1.1840 18 6 1.8164 -0.3649 -2.4666 19 8 1.1002 0.5834 -2.7233 20 6 2.4461 -1.1318 -3.5599 21 6 2.7088 -0.5238 -4.7962 22 6 3.3038 -1.2801 -5.7854 23 6 3.6107 -2.6135 -5.5302 24 7 4.2057 -3.3846 -6.5276 25 6 4.5283 -2.9526 -7.7840 26 6 5.0868 -3.9812 -8.4520 27 6 5.1027 -5.0923 -7.5836 28 6 4.5586 -4.7006 -6.4144 29 7 3.3449 -3.1603 -4.3535 30 6 2.7841 -2.4738 -3.3803 31 1 -0.3633 0.4967 0.8997 32 1 -0.3634 0.5308 -0.8800 33 1 -0.3634 -1.0275 -0.0197 34 1 2.6847 1.1091 2.0533 35 1 3.4608 2.5523 4.9588 36 1 4.1664 -0.8745 0.6651 37 1 3.4810 -2.4145 1.2843 38 1 3.6743 -2.0402 -1.3875 39 1 2.1879 -2.7736 -0.7106 40 1 2.4552 0.5118 -4.9685 41 1 3.5245 -0.8435 -6.7481 42 1 4.3659 -1.9583 -8.1730 43 1 5.4514 -3.9599 -9.4684 44 1 5.4816 -6.0771 -7.8134 45 1 4.4242 -5.3194 -5.5395 46 1 2.5823 -2.9541 -2.4343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987197639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:02 Heat of formation + Delta-G solvation = 75.687727 kcal Electronic energy + Delta-G solvation = -28537.239489 eV Core-core repulsion = 24621.327873 eV Total energy + Delta-G solvation = -3915.911616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.80564 -41.73507 -40.38049 -38.79229 -36.01130 -34.67557 -33.86754 -33.34204 -32.37222 -31.21681 -30.09895 -29.84247 -27.01205 -25.79755 -25.37566 -24.47521 -23.72757 -21.85101 -21.43923 -21.18720 -20.68275 -19.61621 -19.16909 -18.50707 -17.71142 -17.45542 -16.61494 -16.42822 -16.24553 -16.12101 -15.69892 -15.43438 -15.04106 -14.82213 -14.66605 -14.64131 -14.35710 -14.30222 -14.19552 -13.85851 -13.60829 -13.30194 -13.26149 -13.09884 -12.99361 -12.88827 -12.62656 -12.50801 -12.20761 -12.12201 -11.71401 -11.59639 -11.35158 -11.26476 -10.99184 -10.87212 -10.75587 -9.80198 -9.32516 -9.25433 -9.02163 -7.93289 -5.23153 -0.75521 -0.04038 1.12598 1.49427 1.50429 1.52619 1.58339 1.69221 1.83739 2.03767 2.57701 2.62216 3.05284 3.26482 3.40276 3.50073 3.58553 3.69042 3.74315 3.82036 3.97906 4.14868 4.17606 4.25142 4.30045 4.36350 4.38526 4.46245 4.51938 4.59352 4.64920 4.66870 4.71780 4.84369 4.88639 5.03351 5.15533 5.21266 5.22973 5.25367 5.29126 5.31505 5.43632 5.55622 5.84096 6.02271 6.26707 6.27301 6.40446 6.62347 6.95583 7.33580 8.05561 8.28816 9.29855 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021916 B = 0.002158 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.315141 B =12972.957843 C =13724.779322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.134 3.866 3 H 0.050 0.950 4 C 0.171 3.829 5 H 0.076 0.924 6 N -0.728 5.728 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.302 1.302 13 H -0.278 1.278 14 H -0.276 1.276 15 C -0.148 4.148 16 C 0.092 3.908 17 N -0.601 5.601 18 C 0.577 3.423 19 O -0.571 6.571 20 C -0.209 4.209 21 C 0.008 3.992 22 C -0.185 4.185 23 C 0.358 3.642 24 N -0.406 5.406 25 C -0.023 4.023 26 C -0.188 4.188 27 C -0.198 4.198 28 C -0.013 4.013 29 N -0.520 5.520 30 C 0.163 3.837 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.179 0.821 42 H 0.196 0.804 43 H 0.166 0.834 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.770 -13.432 -25.168 28.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.068 0.932 4 C 0.061 3.939 5 H 0.094 0.906 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.228 1.228 13 H -0.204 1.204 14 H -0.202 1.202 15 C -0.188 4.188 16 C -0.030 4.030 17 N -0.333 5.333 18 C 0.367 3.633 19 O -0.452 6.452 20 C -0.215 4.215 21 C -0.018 4.018 22 C -0.206 4.206 23 C 0.130 3.870 24 N -0.083 5.083 25 C -0.147 4.147 26 C -0.211 4.211 27 C -0.222 4.222 28 C -0.138 4.138 29 N -0.232 5.232 30 C 0.005 3.995 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.180 0.820 41 H 0.196 0.804 42 H 0.213 0.787 43 H 0.184 0.816 44 H 0.176 0.824 45 H 0.188 0.812 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.467 -13.752 -24.881 28.466 hybrid contribution 0.020 1.436 1.149 1.839 sum 1.487 -12.315 -23.733 26.779 Atomic orbital electron populations 1.21947 0.93870 1.02645 1.01861 1.21751 0.95049 0.95508 0.84680 0.93213 1.21460 0.94959 0.91099 0.86410 0.90628 1.42508 1.80595 1.10701 1.02935 1.19581 1.36637 0.96193 0.84308 0.89762 1.25575 1.03162 0.95997 1.02148 1.69823 1.54076 1.04975 1.33257 0.85222 0.78043 0.76526 0.80016 1.22843 1.20361 1.20162 1.23417 0.99134 1.01557 0.94734 1.22946 0.95879 0.88335 0.95812 1.48532 1.51621 1.28922 1.04264 1.17875 0.80555 0.83407 0.81486 1.90765 1.39930 1.30926 1.83583 1.20793 1.07683 0.96869 0.96146 1.21713 0.89504 1.01174 0.89411 1.21743 1.03862 0.91962 1.03050 1.18786 0.91731 0.88912 0.87529 1.41661 1.46402 1.10025 1.10178 1.22527 1.06560 1.02421 0.83157 1.21450 1.05504 0.92771 1.01409 1.21441 1.06245 1.00930 0.93558 1.22346 1.05384 0.84329 1.01770 1.67105 1.16657 1.39247 1.00186 1.23664 0.88952 0.89640 0.97272 0.92149 0.92689 0.91058 0.79696 0.94168 0.92587 0.88791 0.88714 0.87470 0.82027 0.80371 0.78682 0.81648 0.82354 0.81180 0.78590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.10 71.98 0.66 -3.94 16 2 C 0.13 4.51 3.24 45.28 0.15 4.66 16 3 H 0.05 1.98 7.70 -2.39 -0.02 1.96 16 4 C 0.17 6.05 3.12 46.18 0.14 6.19 16 5 H 0.08 2.59 7.81 -2.38 -0.02 2.57 16 6 N -0.73 -34.55 5.24 -317.33 -1.66 -36.22 16 7 C -0.24 -12.26 9.97 84.03 0.84 -11.42 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 9 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 10 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 11 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 C -0.15 -4.27 6.77 31.98 0.22 -4.05 16 16 C 0.09 1.97 5.02 86.85 0.44 2.41 16 17 N -0.60 -16.72 3.08 -790.93 -2.43 -19.16 16 18 C 0.58 16.60 7.48 86.73 0.65 17.25 16 19 O -0.57 -20.35 15.66 -3.95 -0.06 -20.41 16 20 C -0.21 -4.66 5.72 -19.99 -0.11 -4.78 16 21 C 0.01 0.16 9.71 22.70 0.22 0.38 16 22 C -0.18 -2.85 9.46 22.44 0.21 -2.64 16 23 C 0.36 6.89 7.48 132.92 0.99 7.89 16 24 N -0.41 -7.33 2.96 -352.11 -1.04 -8.38 16 25 C -0.02 -0.31 10.71 83.14 0.89 0.58 16 26 C -0.19 -2.49 10.86 22.16 0.24 -2.25 16 27 C -0.20 -3.00 10.86 22.16 0.24 -2.76 16 28 C -0.01 -0.24 10.99 83.14 0.91 0.67 16 29 N -0.52 -10.80 9.80 -191.88 -1.88 -12.67 16 30 C 0.16 3.18 9.12 85.04 0.78 3.96 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.84 6.82 -2.39 -0.02 1.82 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.37 19.61 7.53 -92.71 -0.70 18.91 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.09 1.73 6.15 -2.39 -0.01 1.71 16 39 H 0.11 1.65 7.31 -2.39 -0.02 1.63 16 40 H 0.16 2.76 7.94 -2.91 -0.02 2.74 16 41 H 0.18 1.51 6.66 -2.92 -0.02 1.49 16 42 H 0.20 1.32 6.96 -2.91 -0.02 1.30 16 43 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.17 2.87 8.03 -2.91 -0.02 2.85 16 46 H 0.20 3.02 4.54 -2.91 -0.01 3.01 16 Total: -1.00 -70.50 378.03 3.48 -67.03 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.32 Total: 32.87 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 7.92 Total: 8.35 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -6.73 Total: -134.51 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.50 3.48 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987197639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.715 kcal (2) G-P(sol) polarization free energy of solvation -70.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds