Wall clock time and date at job start Tue Mar 31 2020 23:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.00161 * 2 1 4 4 C 1.54331 * 109.87909 * 238.90352 * 2 1 3 5 5 C 1.55149 * 102.94321 * 218.38877 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48496 * 109.47031 * 59.99836 * 12 10 8 14 14 H 1.48497 * 109.47267 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47169 * 300.00118 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88369 * 121.09890 * 2 1 3 18 18 C 1.34781 * 125.65005 * 298.40047 * 17 2 1 19 19 O 1.21571 * 119.99625 * 359.97438 * 18 17 2 20 20 C 1.47736 * 120.00246 * 180.02562 * 18 17 2 21 21 C 1.41177 * 126.33381 * 179.97438 * 20 18 17 22 22 C 1.36686 * 105.44869 * 179.97438 * 21 20 18 23 23 C 1.48003 * 126.59581 * 179.97438 * 22 21 20 24 24 C 1.39490 * 120.13389 * 359.72017 * 23 22 21 25 25 C 1.37983 * 119.85826 * 179.74400 * 24 23 22 26 26 C 1.38349 * 120.13633 * 0.51908 * 25 24 23 27 27 C 1.38342 * 120.27444 * 359.75399 * 26 25 24 28 28 C 1.37979 * 120.13542 * 359.97438 * 27 26 25 29 29 N 1.36374 * 106.80594 * 0.02562 * 22 21 20 30 30 H 0.96995 * 125.00715 * 179.97438 * 29 22 21 31 31 N 1.28449 * 109.97481 * 359.74913 * 29 22 21 32 32 H 1.08999 * 109.47575 * 181.09658 * 1 2 3 33 33 H 1.09008 * 109.46550 * 301.09615 * 1 2 3 34 34 H 1.09003 * 109.47111 * 61.08992 * 1 2 3 35 35 H 1.09007 * 110.71733 * 100.02519 * 4 2 1 36 36 H 1.08999 * 110.71890 * 336.75990 * 4 2 1 37 37 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 38 38 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 39 39 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 40 40 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 41 41 H 1.07996 * 127.27639 * 359.97438 * 21 20 18 42 42 H 1.07994 * 120.07114 * 359.97438 * 24 23 22 43 43 H 1.07996 * 119.93770 * 180.27561 * 25 24 23 44 44 H 1.08001 * 119.85922 * 179.74119 * 26 25 24 45 45 H 1.08004 * 119.93162 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.06919 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2428 5 6 3.2875 -1.5143 -0.6926 6 1 4.1654 -0.8692 -0.6612 7 7 3.5529 -2.7197 -1.4818 8 6 4.8162 -3.2467 -1.5230 9 1 5.6169 -2.7735 -0.9740 10 6 5.0689 -4.3854 -2.2755 11 7 4.0933 -4.9618 -2.9450 12 14 6.7937 -5.0999 -2.3380 13 1 7.2249 -5.4729 -0.9668 14 1 6.7987 -6.3066 -3.2033 15 1 7.7287 -4.0883 -2.8929 16 6 2.8145 -1.8795 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8073 -0.3622 2.4657 19 8 1.1418 0.6232 2.7186 20 6 2.3728 -1.1734 3.5633 21 6 2.2251 -0.9289 4.9459 22 6 2.9140 -1.9319 5.5686 23 6 3.0646 -2.1247 7.0283 24 6 2.4746 -1.2266 7.9178 25 6 2.6142 -1.4147 9.2776 26 6 3.3464 -2.4852 9.7591 27 6 3.9387 -3.3761 8.8819 28 6 3.8017 -3.2019 7.5201 29 7 3.4367 -2.7202 4.5862 30 1 3.9766 -3.5119 4.7363 31 7 3.1048 -2.2622 3.4329 32 1 -0.3634 -1.0274 0.0197 33 1 -0.3633 0.5308 0.8801 34 1 -0.3633 0.4968 -0.8996 35 1 2.3528 -0.0460 -2.0202 36 1 1.3049 -1.4459 -1.6183 37 1 2.8339 -3.1445 -1.9753 38 1 4.2698 -5.7577 -3.4705 39 1 2.1885 -2.7715 0.7127 40 1 3.6716 -2.0340 1.3920 41 1 1.6825 -0.1203 5.4128 42 1 1.9066 -0.3880 7.5430 43 1 2.1542 -0.7228 9.9674 44 1 3.4563 -2.6258 10.8243 45 1 4.5095 -4.2096 9.2639 46 1 4.2648 -3.8978 6.8362 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989139269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:58 Heat of formation + Delta-G solvation = 83.124440 kcal Electronic energy + Delta-G solvation = -28532.267325 eV Core-core repulsion = 24616.678189 eV Total energy + Delta-G solvation = -3915.589136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.68343 -39.69770 -39.24894 -37.24066 -34.16086 -33.11319 -32.36296 -31.49130 -31.32655 -30.87257 -29.02932 -28.34672 -25.39542 -24.58839 -23.64662 -23.57069 -22.79259 -21.11981 -20.83128 -20.18512 -18.84109 -18.26442 -17.35269 -16.94069 -16.44986 -16.05045 -15.65048 -15.34545 -15.11364 -14.94755 -14.34733 -14.00857 -13.87702 -13.67839 -13.62063 -13.45012 -13.23212 -13.17572 -12.99193 -12.54397 -12.21690 -12.07637 -11.81304 -11.62727 -11.44386 -11.15882 -11.05589 -10.90748 -10.64149 -10.47548 -10.28755 -10.22065 -9.98828 -9.84266 -9.72211 -9.45765 -9.37247 -8.97905 -8.42792 -8.25683 -7.05529 -5.82846 -3.12908 0.52538 0.99046 1.68505 2.20072 2.63662 3.24544 3.40064 3.45005 3.45747 3.48021 3.59402 4.15204 4.34647 4.47453 4.54044 4.55080 4.72148 4.89354 5.01065 5.05572 5.19154 5.25559 5.30634 5.33628 5.52866 5.54857 5.55936 5.62932 5.65130 5.80533 5.83666 5.92047 6.00364 6.10144 6.11406 6.16998 6.20682 6.23302 6.35725 6.42530 6.51983 6.55526 6.63414 6.71196 6.91620 6.92749 7.65090 7.73868 7.87865 8.34611 8.42281 9.46593 10.01146 10.36407 11.39266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010216 B = 0.002898 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.197631 B = 9660.969316 C =12144.097175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.170 3.830 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.244 4.244 9 H 0.071 0.929 10 C -0.010 4.010 11 N -0.931 5.931 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.077 3.923 17 N -0.595 5.595 18 C 0.613 3.387 19 O -0.546 6.546 20 C -0.006 4.006 21 C -0.156 4.156 22 C 0.044 3.956 23 C -0.015 4.015 24 C -0.097 4.097 25 C -0.113 4.113 26 C -0.119 4.119 27 C -0.113 4.113 28 C -0.117 4.117 29 N -0.379 5.379 30 H 0.445 0.555 31 N -0.227 5.227 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.164 0.836 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.860 6.340 22.373 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.350 5.350 8 C -0.375 4.375 9 H 0.089 0.911 10 C -0.206 4.206 11 N -0.578 5.578 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.049 4.049 17 N -0.328 5.328 18 C 0.399 3.601 19 O -0.423 6.423 20 C -0.166 4.166 21 C -0.183 4.183 22 C -0.080 4.080 23 C -0.017 4.017 24 C -0.116 4.116 25 C -0.131 4.131 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.136 4.136 29 N -0.094 5.094 30 H 0.291 0.709 31 N -0.063 5.063 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.182 0.818 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.599 6.148 21.672 22.813 hybrid contribution 0.731 -0.769 0.500 1.173 sum -2.868 5.379 22.172 22.995 Atomic orbital electron populations 1.22136 0.95069 1.02267 1.02418 1.21553 0.94295 0.96102 0.84483 0.90814 1.23062 0.99303 0.99668 0.95668 1.21335 0.94592 0.89429 0.88859 0.91562 1.42292 1.09553 1.27810 1.55360 1.19211 0.86821 1.06957 1.24547 0.91070 1.24750 0.97554 0.98403 0.99889 1.69645 1.30811 1.22486 1.34897 0.86266 0.84106 0.78413 0.77361 1.21262 1.21683 1.21189 1.23628 0.95203 0.86878 0.99153 1.48456 1.51231 1.29005 1.04068 1.16503 0.79913 0.83258 0.80398 1.90741 1.41002 1.27178 1.83368 1.21834 1.03968 0.96357 0.94433 1.21647 1.04172 1.00800 0.91726 1.19874 1.03047 0.95580 0.89493 1.17929 0.99137 0.96310 0.88291 1.21179 0.98950 0.98655 0.92799 1.21125 0.98852 0.98021 0.95111 1.21274 0.97547 0.94939 0.99938 1.21056 0.99680 0.99490 0.92839 1.21106 0.99167 0.97256 0.96068 1.43706 1.39618 1.23664 1.02407 0.70947 1.73868 1.14271 1.11736 1.06404 0.92525 0.91545 0.91817 0.90307 0.90387 0.77882 0.93348 0.91495 0.89560 0.81812 0.85072 0.85411 0.85784 0.85585 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.09 37.16 0.34 -1.95 16 2 C 0.14 2.17 3.46 -66.95 -0.23 1.94 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -2.24 6.12 -24.90 -0.15 -2.39 16 5 C 0.17 3.32 3.71 -65.78 -0.24 3.08 16 6 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 7 N -0.71 -17.12 5.24 -51.35 -0.27 -17.39 16 8 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 9 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 11 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 12 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 C 0.08 1.43 5.84 -2.53 -0.01 1.41 16 17 N -0.60 -10.24 3.06 -164.16 -0.50 -10.74 16 18 C 0.61 10.81 7.65 -12.38 -0.09 10.71 16 19 O -0.55 -10.39 15.96 5.30 0.08 -10.30 16 20 C -0.01 -0.10 6.95 -82.87 -0.58 -0.67 16 21 C -0.16 -2.07 10.16 -39.03 -0.40 -2.46 16 22 C 0.04 0.51 6.98 -82.41 -0.58 -0.07 16 23 C -0.01 -0.14 5.87 -104.96 -0.62 -0.76 16 24 C -0.10 -0.80 9.58 -39.21 -0.38 -1.18 16 25 C -0.11 -0.78 10.03 -39.63 -0.40 -1.17 16 26 C -0.12 -0.77 10.04 -39.50 -0.40 -1.17 16 27 C -0.11 -0.77 10.03 -39.64 -0.40 -1.17 16 28 C -0.12 -0.93 9.71 -39.21 -0.38 -1.31 16 29 N -0.38 -4.49 6.80 33.31 0.23 -4.27 16 30 H 0.45 3.87 8.08 -190.46 -1.54 2.33 16 31 N -0.23 -3.48 9.30 33.37 0.31 -3.16 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.02 6.90 -51.92 -0.36 0.66 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.08 1.28 7.71 -51.93 -0.40 0.88 16 37 H 0.39 9.90 7.76 -40.82 -0.32 9.58 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.09 1.65 6.20 -51.93 -0.32 1.33 16 41 H 0.16 1.89 7.39 -52.49 -0.39 1.51 16 42 H 0.13 0.95 7.09 -52.49 -0.37 0.58 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 46 H 0.12 0.74 7.20 -52.48 -0.38 0.36 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -32.52 382.45 -10.87 -43.39 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.42 Total: 10.75 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -4.76 Total: -4.24 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 0.49 Total: -62.18 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.52 -10.87 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989139269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.515 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds