Wall clock time and date at job start Tue Mar 31 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.99737 * 2 1 4 4 C 1.54334 * 109.77601 * 121.16607 * 2 1 3 5 5 C 1.55166 * 103.02152 * 97.49687 * 4 2 1 6 6 H 1.09001 * 111.00050 * 277.23275 * 5 4 2 7 7 N 1.46497 * 111.00409 * 153.37869 * 5 4 2 8 8 C 1.36935 * 119.99691 * 161.34727 * 7 5 4 9 9 H 1.08000 * 120.00301 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99694 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99966 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99683 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47127 * 60.00013 * 12 10 8 14 14 H 1.48505 * 109.46896 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.46985 * 299.99781 * 12 10 8 16 16 C 1.54905 * 101.58031 * 35.30541 * 5 4 2 17 17 N 1.47017 * 109.88205 * 238.90143 * 2 1 3 18 18 C 1.34783 * 125.64504 * 59.56604 * 17 2 1 19 19 O 1.21588 * 119.99546 * 183.61142 * 18 17 2 20 20 C 1.47627 * 119.99975 * 3.61257 * 18 17 2 21 21 C 1.39764 * 120.02335 * 187.05335 * 20 18 17 22 22 C 1.37614 * 119.96740 * 180.02562 * 21 20 18 23 23 C 1.39525 * 120.02774 * 359.97438 * 22 21 20 24 24 C 1.48272 * 119.96885 * 180.02562 * 23 22 21 25 25 C 1.40943 * 126.24798 * 359.69684 * 24 23 22 26 26 N 1.30634 * 108.06758 * 180.26425 * 25 24 23 27 27 N 1.39998 * 108.56928 * 359.97438 * 26 25 24 28 28 H 0.97000 * 125.87437 * 180.02562 * 27 26 25 29 29 C 1.34717 * 108.25709 * 0.02562 * 27 26 25 30 30 C 1.39529 * 120.05629 * 0.27886 * 23 22 21 31 31 C 1.37613 * 120.02824 * 359.45166 * 30 23 22 32 32 H 1.08997 * 109.47433 * 199.61874 * 1 2 3 33 33 H 1.09003 * 109.46856 * 319.62045 * 1 2 3 34 34 H 1.09000 * 109.46804 * 79.62105 * 1 2 3 35 35 H 1.09001 * 110.85535 * 339.03094 * 4 2 1 36 36 H 1.09004 * 110.66727 * 215.87615 * 4 2 1 37 37 H 0.96999 * 120.00278 * 341.35098 * 7 5 4 38 38 H 0.97008 * 119.99616 * 180.02562 * 11 10 8 39 39 H 1.09002 * 110.36838 * 204.15333 * 16 5 4 40 40 H 1.09004 * 110.46009 * 81.87653 * 16 5 4 41 41 H 1.07994 * 120.01521 * 0.04008 * 21 20 18 42 42 H 1.07996 * 119.98447 * 179.97438 * 22 21 20 43 43 H 1.07998 * 125.96460 * 0.21815 * 25 24 23 44 44 H 1.07994 * 126.19923 * 180.02562 * 29 27 26 45 45 H 1.08000 * 119.98080 * 179.69585 * 30 23 22 46 46 H 1.07989 * 120.01483 * 180.29816 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0522 -0.7516 1.2427 5 6 2.3561 -2.1698 0.6914 6 1 1.4521 -2.7779 0.6578 7 7 3.3999 -2.8277 1.4813 8 6 3.5510 -4.1872 1.4190 9 1 2.9010 -4.7745 0.7874 10 6 4.5398 -4.8107 2.1679 11 7 5.3316 -4.0950 2.9381 12 14 4.7463 -6.6652 2.0824 13 1 5.0486 -7.0657 0.6848 14 1 5.8628 -7.0803 2.9694 15 1 3.4915 -7.3240 2.5258 16 6 2.8613 -1.8466 -0.7368 17 7 2.0300 -0.7141 -1.1838 18 6 1.7754 -0.3844 -2.4657 19 8 2.1889 -1.0871 -3.3677 20 6 0.9944 0.8297 -2.7744 21 6 0.6039 1.0943 -4.0900 22 6 -0.1237 2.2267 -4.3766 23 6 -0.4718 3.1102 -3.3544 24 6 -1.2562 4.3296 -3.6645 25 6 -1.7113 4.7263 -4.9381 26 7 -2.3579 5.8535 -4.8044 27 7 -2.3426 6.2185 -3.4529 28 1 -2.7500 7.0132 -3.0742 29 6 -1.6648 5.2764 -2.7689 30 6 -0.0780 2.8499 -2.0414 31 6 0.6448 1.7153 -1.7513 32 1 -0.3634 -0.9680 0.3450 33 1 -0.3633 0.7829 0.6658 34 1 -0.3633 0.1851 -1.0109 35 1 1.2884 -0.7952 2.0192 36 1 2.9600 -0.2828 1.6225 37 1 3.9839 -2.3002 2.0484 38 1 6.0228 -4.5307 3.4611 39 1 2.7178 -2.7049 -1.3933 40 1 3.9125 -1.5595 -0.7133 41 1 0.8727 0.4102 -4.8813 42 1 -0.4252 2.4316 -5.3932 43 1 -1.5524 4.1920 -5.8632 44 1 -1.4789 5.2706 -1.7051 45 1 -0.3439 3.5371 -1.2518 46 1 0.9454 1.5116 -0.7343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989554995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:00 Heat of formation + Delta-G solvation = 118.440492 kcal Electronic energy + Delta-G solvation = -28530.626121 eV Core-core repulsion = 24616.568404 eV Total energy + Delta-G solvation = -3914.057717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67688 -40.71850 -38.50531 -37.42582 -34.64398 -33.09333 -31.90355 -31.88396 -31.43450 -30.56981 -29.23886 -28.04407 -25.78977 -24.46131 -23.47303 -23.34417 -22.06041 -21.59289 -20.54367 -20.15731 -19.57147 -18.52764 -17.46449 -17.05763 -16.08513 -15.72098 -15.39064 -15.15148 -15.11562 -14.73921 -14.57891 -14.41364 -14.08721 -13.83061 -13.49818 -13.23934 -13.23375 -13.05377 -12.89698 -12.62550 -12.28887 -12.14839 -12.07611 -11.64984 -11.27806 -11.20820 -11.08671 -10.88086 -10.71416 -10.68731 -10.26877 -10.21649 -9.99674 -9.90825 -9.76969 -9.68288 -9.03136 -9.01431 -8.40994 -8.09287 -7.08592 -5.84244 -3.14937 0.52501 1.28221 1.48469 2.30728 2.37855 3.13392 3.19056 3.42598 3.47092 3.48253 3.89524 4.17790 4.33236 4.48101 4.55521 4.60444 4.72797 4.77858 4.87438 4.99261 5.01232 5.05119 5.12098 5.28175 5.35886 5.48024 5.54867 5.56069 5.70388 5.73481 5.78165 5.86769 5.91584 5.98426 6.10164 6.14335 6.24370 6.25138 6.28596 6.35139 6.40345 6.54620 6.63733 6.71579 6.75754 6.88582 7.13419 7.65591 7.78930 8.33132 8.39271 9.45489 9.98211 10.33132 11.37656 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.002064 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.237218 B =13564.556875 C =14195.307928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 H 0.085 0.915 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.064 0.936 7 N -0.712 5.712 8 C -0.248 4.248 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.931 5.931 12 Si 0.909 3.091 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.081 3.919 17 N -0.603 5.603 18 C 0.567 3.433 19 O -0.544 6.544 20 C -0.141 4.141 21 C -0.051 4.051 22 C -0.134 4.134 23 C 0.026 3.974 24 C -0.203 4.203 25 C 0.070 3.930 26 N -0.295 5.295 27 N -0.473 5.473 28 H 0.442 0.558 29 C 0.079 3.921 30 C -0.140 4.140 31 C -0.108 4.108 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.188 0.812 44 H 0.182 0.818 45 H 0.123 0.877 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 22.025 -8.917 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.016 3.984 3 H 0.102 0.898 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.082 0.918 7 N -0.352 5.352 8 C -0.379 4.379 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.212 1.212 16 C -0.043 4.043 17 N -0.336 5.336 18 C 0.357 3.643 19 O -0.423 6.423 20 C -0.144 4.144 21 C -0.070 4.070 22 C -0.152 4.152 23 C 0.024 3.976 24 C -0.215 4.215 25 C -0.118 4.118 26 N -0.116 5.116 27 N -0.179 5.179 28 H 0.286 0.714 29 C -0.070 4.070 30 C -0.158 4.158 31 C -0.125 4.125 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.222 0.778 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.153 0.847 42 H 0.144 0.856 43 H 0.205 0.795 44 H 0.199 0.801 45 H 0.141 0.859 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.338 22.372 -10.066 29.475 hybrid contribution 0.659 -1.017 0.757 1.428 sum -15.679 21.356 -9.309 28.081 Atomic orbital electron populations 1.22748 0.94737 1.03171 1.03119 1.21978 0.94295 0.95898 0.86193 0.89785 1.23021 1.01885 0.97171 0.95478 1.21286 0.92830 0.91018 0.88713 0.91787 1.42288 1.36999 1.04940 1.50938 1.19208 1.13423 0.83174 1.22093 0.90986 1.24766 0.98291 0.98107 0.99334 1.69648 1.22167 1.34547 1.31432 0.86245 0.77240 0.85140 0.77427 1.21076 1.21644 1.21151 1.23442 0.94488 0.87565 0.98854 1.48500 1.49992 1.30937 1.04186 1.17931 0.80053 0.84824 0.81479 1.90769 1.53543 1.52981 1.45023 1.19966 1.03098 0.96702 0.94633 1.21179 0.94095 0.96078 0.95668 1.20971 1.00676 0.94674 0.98890 1.18240 0.94361 0.91583 0.93367 1.19004 1.10514 0.99017 0.92928 1.24066 0.95735 0.93350 0.98613 1.77251 1.23599 1.16268 0.94506 1.46234 1.44280 1.21460 1.05943 0.71399 1.22707 0.95467 0.89947 0.98919 1.20989 1.01272 0.98080 0.95453 1.22922 0.95190 0.92658 1.01727 0.91459 0.91225 0.90868 0.89899 0.90308 0.77845 0.93311 0.90928 0.91300 0.84736 0.85561 0.79539 0.80080 0.85864 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 7.64 37.16 0.28 -1.55 16 2 C 0.12 1.46 2.72 -66.95 -0.18 1.28 16 3 H 0.08 0.87 6.04 -51.93 -0.31 0.55 16 4 C -0.14 -1.93 6.01 -24.89 -0.15 -2.08 16 5 C 0.17 3.25 3.69 -65.78 -0.24 3.01 16 6 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 7 N -0.71 -16.90 5.28 -51.35 -0.27 -17.17 16 8 C -0.25 -6.67 9.98 -15.06 -0.15 -6.82 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 12 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 C 0.08 1.54 6.62 -2.53 -0.02 1.52 16 17 N -0.60 -9.56 3.08 -165.90 -0.51 -10.07 16 18 C 0.57 9.48 7.53 -12.43 -0.09 9.39 16 19 O -0.54 -11.08 16.59 5.29 0.09 -11.00 16 20 C -0.14 -1.84 5.17 -104.93 -0.54 -2.38 16 21 C -0.05 -0.61 9.58 -39.24 -0.38 -0.98 16 22 C -0.13 -1.27 9.56 -39.33 -0.38 -1.65 16 23 C 0.03 0.23 5.88 -104.81 -0.62 -0.38 16 24 C -0.20 -1.59 6.04 -105.34 -0.64 -2.23 16 25 C 0.07 0.55 11.42 -17.04 -0.19 0.36 16 26 N -0.30 -2.55 12.66 30.82 0.39 -2.16 16 27 N -0.47 -2.72 7.32 30.64 0.22 -2.50 16 28 H 0.44 1.09 8.96 -182.67 -1.64 -0.55 16 29 C 0.08 0.44 11.38 -16.88 -0.19 0.25 16 30 C -0.14 -1.18 9.55 -39.33 -0.38 -1.55 16 31 C -0.11 -1.10 6.50 -39.24 -0.26 -1.36 16 32 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 33 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.07 0.79 4.75 -51.93 -0.25 0.55 16 35 H 0.08 1.05 7.83 -51.93 -0.41 0.64 16 36 H 0.08 1.12 7.99 -51.93 -0.42 0.71 16 37 H 0.39 9.67 7.71 -40.82 -0.31 9.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 1.50 8.00 -51.93 -0.42 1.09 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.13 1.63 7.66 -52.49 -0.40 1.23 16 42 H 0.13 0.90 7.03 -52.49 -0.37 0.53 16 43 H 0.19 1.03 7.34 -52.49 -0.39 0.65 16 44 H 0.18 0.41 7.27 -52.49 -0.38 0.03 16 45 H 0.12 0.68 7.00 -52.49 -0.37 0.31 16 46 H 0.17 1.55 2.19 -54.80 -0.12 1.43 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -34.69 371.92 -9.99 -44.67 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.00 Total: 7.62 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.21 Total: -5.51 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.56 Total: -58.45 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.69 -9.99 -44.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989554995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.113 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds