Wall clock time and date at job start Tue Mar 31 2020 23:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.99564 * 2 1 4 4 C 1.54323 * 109.88275 * 121.09828 * 2 1 3 5 5 C 1.55448 * 102.96710 * 141.60966 * 4 2 1 6 6 H 1.09001 * 111.11328 * 206.46878 * 5 4 2 7 7 N 1.46496 * 111.01620 * 82.52614 * 5 4 2 8 8 C 1.36932 * 120.00346 * 161.50302 * 7 5 4 9 9 H 1.08005 * 119.99670 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00387 * 180.02562 * 8 7 5 11 11 N 1.31624 * 120.00020 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00334 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46906 * 59.99569 * 12 10 8 14 14 H 1.48493 * 109.47130 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47208 * 299.99871 * 12 10 8 16 16 C 1.54915 * 101.45036 * 324.51447 * 5 4 2 17 17 N 1.47026 * 109.88112 * 238.90491 * 2 1 3 18 18 C 1.34779 * 125.64459 * 61.66441 * 17 2 1 19 19 O 1.21550 * 120.00074 * 173.72600 * 18 17 2 20 20 C 1.47861 * 120.00341 * 353.72337 * 18 17 2 21 21 C 1.39615 * 120.10921 * 16.70800 * 20 18 17 22 22 C 1.37986 * 119.98698 * 179.76481 * 21 20 18 23 23 C 1.38261 * 120.21396 * 0.51068 * 22 21 20 24 24 C 1.38922 * 120.22665 * 359.74647 * 23 22 21 25 25 N 1.40211 * 119.99386 * 179.97438 * 24 23 22 26 26 C 1.35222 * 126.04968 * 0.02562 * 25 24 23 27 27 C 1.35321 * 107.70823 * 180.02562 * 26 25 24 28 28 C 1.39919 * 107.93679 * 359.97438 * 27 26 25 29 29 N 1.30882 * 108.23765 * 359.72125 * 28 27 26 30 30 C 1.38590 * 120.01005 * 359.97438 * 24 23 22 31 31 H 1.08992 * 109.47357 * 197.47996 * 1 2 3 32 32 H 1.09008 * 109.46673 * 317.47824 * 1 2 3 33 33 H 1.08996 * 109.47211 * 77.47351 * 1 2 3 34 34 H 1.08993 * 110.72058 * 259.97185 * 4 2 1 35 35 H 1.08997 * 110.71781 * 23.24647 * 4 2 1 36 36 H 0.97003 * 119.99590 * 341.49948 * 7 5 4 37 37 H 0.96999 * 120.00308 * 179.97438 * 11 10 8 38 38 H 1.09001 * 110.36842 * 278.11142 * 16 5 4 39 39 H 1.09000 * 110.36174 * 155.89967 * 16 5 4 40 40 H 1.08007 * 120.01103 * 0.02562 * 21 20 18 41 41 H 1.07992 * 119.89070 * 180.25363 * 22 21 20 42 42 H 1.07993 * 119.88479 * 179.76263 * 23 22 21 43 43 H 1.07997 * 126.14658 * 359.97438 * 26 25 24 44 44 H 1.08008 * 126.03398 * 180.02562 * 27 26 25 45 45 H 1.07994 * 125.88297 * 180.02562 * 28 27 26 46 46 H 1.08001 * 120.10890 * 179.97438 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7496 1.2427 5 6 3.2900 -1.5160 0.6919 6 1 3.4885 -2.4135 1.2777 7 7 4.4698 -0.6486 0.6479 8 6 5.7211 -1.1983 0.5631 9 1 5.8382 -2.2715 0.5290 10 6 6.8389 -0.3765 0.5220 11 7 6.6962 0.9313 0.5640 12 14 8.5459 -1.1265 0.4070 13 1 8.6489 -1.9347 -0.8346 14 1 9.5614 -0.0435 0.3778 15 1 8.7843 -1.9976 1.5858 16 6 2.8144 -1.8794 -0.7369 17 7 2.0300 -0.7141 -1.1840 18 6 1.8082 -0.3613 -2.4657 19 8 2.3648 -0.9594 -3.3657 20 6 0.8879 0.7532 -2.7772 21 6 0.5213 1.6585 -1.7796 22 6 -0.3339 2.7005 -2.0742 23 6 -0.8386 2.8460 -3.3532 24 6 -0.4840 1.9473 -4.3514 25 7 -0.9991 2.0992 -5.6466 26 6 -1.8451 3.0706 -6.0577 27 6 -2.1018 2.8646 -7.3702 28 6 -1.3893 1.7307 -7.7758 29 7 -0.7234 1.2751 -6.7453 30 6 0.3789 0.9007 -4.0672 31 1 -0.3634 -0.9801 0.3087 32 1 -0.3633 0.7575 0.6946 33 1 -0.3633 0.2229 -1.0032 34 1 2.3529 -0.0461 2.0200 35 1 1.3051 -1.4460 1.6181 36 1 4.3646 0.3152 0.6789 37 1 7.4774 1.5056 0.5357 38 1 2.1885 -2.7715 -0.7130 39 1 3.6705 -2.0350 -1.3935 40 1 0.9103 1.5457 -0.7783 41 1 -0.6132 3.4022 -1.3023 42 1 -1.5106 3.6613 -3.5769 43 1 -2.2448 3.8673 -5.4478 44 1 -2.7427 3.4693 -7.9948 45 1 -1.3854 1.3075 -8.7694 46 1 0.6553 0.2008 -4.8419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989557675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:50 Heat of formation + Delta-G solvation = 111.355523 kcal Electronic energy + Delta-G solvation = -29245.141642 eV Core-core repulsion = 25330.776698 eV Total energy + Delta-G solvation = -3914.364945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57416 -41.86933 -39.68910 -38.84461 -36.23800 -34.83038 -33.34626 -32.55738 -32.37799 -31.31025 -30.60824 -29.34357 -27.14880 -25.85019 -25.13231 -24.45365 -23.34387 -21.95599 -21.76569 -21.35538 -20.51898 -19.36927 -19.15624 -17.94143 -17.39330 -17.23008 -16.51493 -16.46353 -16.27073 -16.03164 -15.60952 -15.42635 -15.31646 -15.07321 -14.77201 -14.56989 -14.45327 -14.30812 -13.73199 -13.61885 -13.55673 -13.25233 -13.15146 -12.92018 -12.77452 -12.58434 -12.48065 -12.30707 -12.20550 -12.01206 -11.70564 -11.62489 -11.52826 -11.13756 -11.12784 -11.01354 -10.22330 -10.12671 -9.70596 -9.05127 -8.99932 -7.98012 -5.25363 -0.39205 -0.08802 1.10146 1.35348 1.43398 1.47007 1.51693 1.75660 1.85010 1.93067 2.52892 2.70304 3.22649 3.36107 3.54424 3.60238 3.74586 3.81737 3.86572 3.90810 4.02549 4.03760 4.11770 4.24105 4.31640 4.37446 4.45789 4.63215 4.69751 4.72419 4.73446 4.78694 4.84706 4.96078 5.02148 5.03851 5.09378 5.16304 5.18702 5.22706 5.25861 5.38725 5.42555 5.50805 5.57397 5.69432 6.16253 6.24762 6.49374 6.62365 7.02778 7.31857 8.06463 8.28454 9.24779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.002718 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.641147 B =10300.930000 C =11011.691593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.086 0.914 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.082 0.918 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.075 0.925 10 C -0.072 4.072 11 N -0.965 5.965 12 Si 0.966 3.034 13 H -0.289 1.289 14 H -0.296 1.296 15 H -0.271 1.271 16 C 0.080 3.920 17 N -0.591 5.591 18 C 0.556 3.444 19 O -0.599 6.599 20 C -0.127 4.127 21 C -0.106 4.106 22 C -0.092 4.092 23 C -0.098 4.098 24 C 0.129 3.871 25 N -0.337 5.337 26 C 0.051 3.949 27 C -0.264 4.264 28 C 0.047 3.953 29 N -0.352 5.352 30 C -0.088 4.088 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.375 0.625 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.178 0.822 41 H 0.189 0.811 42 H 0.178 0.822 43 H 0.221 0.779 44 H 0.187 0.813 45 H 0.212 0.788 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.407 8.140 -3.882 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.103 0.897 4 C -0.157 4.157 5 C 0.048 3.952 6 H 0.100 0.900 7 N -0.361 5.361 8 C -0.373 4.373 9 H 0.093 0.907 10 C -0.265 4.265 11 N -0.615 5.615 12 Si 0.796 3.204 13 H -0.216 1.216 14 H -0.222 1.222 15 H -0.196 1.196 16 C -0.045 4.045 17 N -0.322 5.322 18 C 0.347 3.653 19 O -0.482 6.482 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.119 4.119 24 C 0.037 3.963 25 N -0.113 5.113 26 C -0.090 4.090 27 C -0.292 4.292 28 C -0.139 4.139 29 N -0.172 5.172 30 C -0.110 4.110 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.207 0.793 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.194 0.806 41 H 0.206 0.794 42 H 0.195 0.805 43 H 0.237 0.763 44 H 0.204 0.796 45 H 0.229 0.771 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.159 6.811 -3.910 26.356 hybrid contribution 1.315 0.000 -1.267 1.826 sum -23.844 6.811 -5.177 25.332 Atomic orbital electron populations 1.22830 0.91780 1.04705 1.03838 1.22256 0.96130 0.96065 0.84370 0.89669 1.23100 0.96563 1.00228 0.95853 1.21698 0.86987 0.94865 0.91663 0.89991 1.42428 1.01023 1.05193 1.87414 1.19557 0.84875 0.92087 1.40826 0.90710 1.25479 1.01388 0.95861 1.03755 1.69777 1.29470 1.02995 1.59300 0.85322 0.80194 0.76921 0.78002 1.21597 1.22193 1.19639 1.23176 0.94018 0.88127 0.99199 1.48381 1.50651 1.28453 1.04717 1.18480 0.81578 0.83673 0.81577 1.90726 1.52806 1.57548 1.47074 1.19581 1.00646 0.97946 0.94922 1.22940 0.96107 0.92594 1.00788 1.21475 0.95620 0.97214 0.96651 1.21478 1.00729 0.98212 0.91477 1.17597 0.98437 0.97864 0.82369 1.46011 1.36112 1.22501 1.06720 1.23447 0.93661 0.94434 0.97456 1.22059 1.09552 1.02175 0.95451 1.24716 0.94344 0.96029 0.98805 1.77551 1.25983 1.18906 0.94753 1.20673 0.96613 0.97763 0.95912 0.91165 0.87273 0.91370 0.88822 0.86665 0.79310 0.94106 0.90292 0.94912 0.80599 0.79364 0.80517 0.76258 0.79619 0.77132 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 7.78 71.98 0.56 -2.34 16 2 C 0.11 2.86 2.73 45.34 0.12 2.98 16 3 H 0.09 2.18 6.19 -2.39 -0.01 2.16 16 4 C -0.12 -2.94 6.05 31.89 0.19 -2.75 16 5 C 0.16 5.72 3.71 46.49 0.17 5.89 16 6 H 0.08 2.82 8.13 -2.39 -0.02 2.80 16 7 N -0.72 -34.93 5.27 -315.90 -1.66 -36.59 16 8 C -0.24 -13.36 9.98 84.03 0.84 -12.52 16 9 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 11 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 12 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.08 3.09 6.62 86.86 0.58 3.66 16 17 N -0.59 -21.07 3.06 -791.40 -2.43 -23.50 16 18 C 0.56 22.76 7.61 86.79 0.66 23.42 16 19 O -0.60 -30.69 16.70 -3.87 -0.06 -30.76 16 20 C -0.13 -4.09 5.06 -20.10 -0.10 -4.19 16 21 C -0.11 -2.32 6.23 22.54 0.14 -2.18 16 22 C -0.09 -1.27 10.02 22.22 0.22 -1.05 16 23 C -0.10 -1.49 9.45 22.44 0.21 -1.28 16 24 C 0.13 3.26 6.68 38.05 0.25 3.51 16 25 N -0.34 -8.33 3.80 -187.86 -0.71 -9.04 16 26 C 0.05 0.79 10.80 83.50 0.90 1.69 16 27 C -0.26 -3.85 10.80 22.00 0.24 -3.62 16 28 C 0.05 0.95 12.03 85.24 1.03 1.98 16 29 N -0.35 -10.29 11.86 -56.97 -0.68 -10.96 16 30 C -0.09 -2.94 9.20 22.65 0.21 -2.73 16 31 H 0.07 1.10 7.70 -2.39 -0.02 1.09 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.07 1.32 4.27 -2.39 -0.01 1.31 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.12 2.04 7.57 -2.39 -0.02 2.03 16 36 H 0.37 19.34 7.82 -92.71 -0.72 18.62 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.03 1.58 7.98 -2.39 -0.02 1.56 16 40 H 0.18 3.44 2.60 -2.91 -0.01 3.44 16 41 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.18 1.04 6.72 -2.91 -0.02 1.03 16 43 H 0.22 1.10 7.03 -2.91 -0.02 1.08 16 44 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.21 2.78 8.06 -2.91 -0.02 2.75 16 46 H 0.11 4.32 7.38 -2.91 -0.02 4.29 16 Total: -1.00 -88.13 373.03 3.76 -84.37 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.30 Total: 29.25 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 6.69 Total: 6.75 kcal Atomic # 7 Polarization: -133.73 SS G_CDS: -5.20 Total: -138.93 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.76 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -88.13 3.76 -84.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989557675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.727 kcal (2) G-P(sol) polarization free energy of solvation -88.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds