Wall clock time and date at job start Tue Mar 31 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.41185 * 2 1 4 4 C 1.54903 * 110.37172 * 122.29923 * 2 1 3 5 5 C 1.55157 * 101.58291 * 155.84506 * 4 2 1 6 6 H 1.08997 * 110.72132 * 83.04183 * 5 4 2 7 7 N 1.46504 * 110.71709 * 206.13645 * 5 4 2 8 8 C 1.36939 * 119.99408 * 202.55751 * 7 5 4 9 9 H 1.07998 * 120.00325 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99623 * 179.72473 * 8 7 5 11 11 N 1.31614 * 119.99852 * 180.27934 * 10 8 7 12 12 Si 1.86801 * 119.99860 * 0.27764 * 10 8 7 13 13 H 1.48499 * 109.47148 * 90.00032 * 12 10 8 14 14 H 1.48498 * 109.46899 * 209.99841 * 12 10 8 15 15 H 1.48496 * 109.47213 * 329.99888 * 12 10 8 16 16 C 1.54322 * 103.10132 * 324.58911 * 5 4 2 17 17 N 1.47319 * 107.12362 * 21.97316 * 16 5 4 18 18 C 1.34773 * 125.61577 * 181.10934 * 17 16 5 19 19 O 1.21594 * 119.99695 * 174.47082 * 18 17 16 20 20 C 1.47584 * 120.00118 * 354.46130 * 18 17 16 21 21 C 1.39817 * 120.00278 * 186.84143 * 20 18 17 22 22 C 1.36579 * 119.99261 * 179.72004 * 21 20 18 23 23 C 1.39781 * 120.00320 * 0.53172 * 22 21 20 24 24 C 1.47658 * 119.99282 * 179.74171 * 23 22 21 25 25 C 1.36248 * 126.77794 * 180.02562 * 24 23 22 26 26 N 1.33677 * 107.86399 * 179.97438 * 25 24 23 27 27 C 1.30656 * 109.57688 * 0.02562 * 26 25 24 28 28 N 1.34957 * 109.02638 * 359.76503 * 27 26 25 29 29 H 0.97001 * 126.45618 * 180.26817 * 28 27 26 30 30 C 1.39780 * 120.00880 * 359.76425 * 23 22 21 31 31 C 1.36582 * 120.00413 * 359.95251 * 30 23 22 32 32 H 1.08999 * 109.46729 * 297.70081 * 1 2 3 33 33 H 1.08997 * 109.47520 * 57.69842 * 1 2 3 34 34 H 1.09000 * 109.47285 * 177.70339 * 1 2 3 35 35 H 1.09001 * 110.99846 * 37.77105 * 4 2 1 36 36 H 1.08995 * 111.03710 * 273.93948 * 4 2 1 37 37 H 0.96996 * 120.00120 * 22.56047 * 7 5 4 38 38 H 0.97002 * 120.00064 * 180.02562 * 11 10 8 39 39 H 1.09003 * 109.88556 * 141.52233 * 16 5 4 40 40 H 1.09005 * 109.88303 * 262.68384 * 16 5 4 41 41 H 1.08003 * 120.00201 * 359.97438 * 21 20 18 42 42 H 1.08003 * 120.00156 * 180.27717 * 22 21 20 43 43 H 1.08004 * 126.06645 * 359.97438 * 25 24 23 44 44 H 1.07994 * 125.48621 * 180.02562 * 27 26 25 45 45 H 1.08001 * 119.99623 * 179.97438 * 30 23 22 46 46 H 1.08000 * 119.99977 * 179.97438 * 31 30 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7759 1.2275 5 6 3.4778 -1.1998 0.7339 6 1 4.1952 -0.3914 0.8748 7 7 3.9250 -2.4130 1.4227 8 6 5.2612 -2.7019 1.5024 9 1 5.9853 -2.0352 1.0579 10 6 5.6853 -3.8485 2.1600 11 7 6.9698 -4.1233 2.2414 12 14 4.4328 -5.0013 2.9293 13 1 4.0236 -6.0236 1.9331 14 1 5.0367 -5.6727 4.1081 15 1 3.2426 -4.2239 3.3583 16 6 3.2539 -1.4755 -0.7679 17 7 2.0430 -0.7383 -1.1685 18 6 1.4970 -0.7362 -2.4007 19 8 0.4381 -0.1713 -2.5954 20 6 2.1847 -1.4192 -3.5136 21 6 1.6954 -1.2975 -4.8177 22 6 2.3352 -1.9250 -5.8484 23 6 3.4726 -2.6980 -5.5979 24 6 4.1609 -3.3810 -6.7115 25 6 5.2725 -4.1641 -6.6258 26 7 5.5712 -4.5884 -7.8578 27 6 4.7027 -4.1094 -8.7083 28 7 3.8031 -3.3562 -8.0414 29 1 3.0475 -2.8851 -8.4263 30 6 3.9583 -2.8248 -4.2933 31 6 3.3221 -2.1927 -3.2632 32 1 -0.3633 0.4777 0.9099 33 1 -0.3634 0.5491 -0.8686 34 1 -0.3634 -1.0268 -0.0412 35 1 1.4511 -1.6481 1.4406 36 1 2.1399 -0.1271 2.1004 37 1 3.2746 -3.0116 1.8221 38 1 7.2662 -4.9248 2.7006 39 1 4.1120 -1.1247 -1.3412 40 1 3.1081 -2.5434 -0.9311 41 1 0.8140 -0.7039 -5.0106 42 1 1.9600 -1.8274 -6.8564 43 1 5.8159 -4.4002 -5.7228 44 1 4.7021 -4.2907 -9.7729 45 1 4.8369 -3.4224 -4.1000 46 1 3.6971 -2.2911 -2.2552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989638617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:43 Heat of formation + Delta-G solvation = 74.852247 kcal Electronic energy + Delta-G solvation = -28874.449404 eV Core-core repulsion = 24958.501559 eV Total energy + Delta-G solvation = -3915.947845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.01509 -41.72437 -39.75953 -38.65657 -36.07304 -34.35628 -33.52828 -33.41594 -32.75719 -31.63061 -30.56732 -29.31165 -27.10624 -25.81756 -24.99911 -23.99531 -22.98744 -22.33943 -21.85447 -21.51560 -20.60186 -19.63961 -19.44323 -18.14021 -17.76274 -16.93991 -16.51507 -16.38367 -16.03115 -15.91801 -15.65899 -15.51259 -15.04368 -14.95427 -14.86766 -14.68966 -14.48109 -14.38332 -14.27476 -13.79123 -13.62723 -13.54938 -13.16724 -13.04797 -12.94519 -12.86474 -12.38837 -12.21670 -11.99525 -11.80994 -11.67104 -11.54380 -11.18763 -11.10255 -10.99383 -10.67855 -10.62952 -10.15805 -9.69280 -9.34057 -8.89406 -7.99046 -5.34450 -0.56872 0.36548 1.05360 1.42493 1.44057 1.51245 1.85571 1.90399 2.08698 2.17230 2.51156 2.86719 3.26285 3.30201 3.53546 3.64608 3.66703 3.77969 3.83150 3.87178 3.96380 4.13182 4.21293 4.25192 4.31097 4.39753 4.45170 4.49289 4.51563 4.64355 4.68785 4.75288 4.82860 4.87912 4.97527 5.07753 5.09695 5.17953 5.24900 5.28481 5.35643 5.43747 5.53197 5.61312 5.77493 5.81195 6.24076 6.44908 6.46782 7.01523 7.07123 7.10229 7.83271 8.01446 9.21450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008805 B = 0.003468 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.154259 B = 8071.017890 C =10808.212843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 H 0.089 0.911 4 C -0.128 4.128 5 C 0.167 3.833 6 H 0.076 0.924 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.067 0.933 10 C -0.055 4.055 11 N -0.979 5.979 12 Si 0.944 3.056 13 H -0.282 1.282 14 H -0.301 1.301 15 H -0.249 1.249 16 C 0.075 3.925 17 N -0.605 5.605 18 C 0.569 3.431 19 O -0.568 6.568 20 C -0.152 4.152 21 C -0.056 4.056 22 C -0.126 4.126 23 C 0.015 3.985 24 C -0.003 4.003 25 C -0.012 4.012 26 N -0.539 5.539 27 C 0.211 3.789 28 N -0.552 5.552 29 H 0.437 0.563 30 C -0.119 4.119 31 C -0.117 4.117 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.368 0.632 38 H 0.257 0.743 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.174 0.826 44 H 0.254 0.746 45 H 0.141 0.859 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 6.176 -18.904 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.167 4.167 5 C 0.057 3.943 6 H 0.094 0.906 7 N -0.381 5.381 8 C -0.362 4.362 9 H 0.085 0.915 10 C -0.247 4.247 11 N -0.629 5.629 12 Si 0.772 3.228 13 H -0.208 1.208 14 H -0.228 1.228 15 H -0.174 1.174 16 C -0.050 4.050 17 N -0.337 5.337 18 C 0.360 3.640 19 O -0.450 6.450 20 C -0.156 4.156 21 C -0.075 4.075 22 C -0.145 4.145 23 C 0.014 3.986 24 C -0.118 4.118 25 C -0.162 4.162 26 N -0.258 5.258 27 C -0.072 4.072 28 N -0.156 5.156 29 H 0.279 0.721 30 C -0.138 4.138 31 C -0.134 4.134 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.191 0.809 44 H 0.270 0.730 45 H 0.159 0.841 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.442 5.974 -19.269 23.702 hybrid contribution -0.982 -0.422 0.726 1.292 sum -13.424 5.553 -18.543 23.556 Atomic orbital electron populations 1.22043 0.93406 1.02001 1.03307 1.22043 0.95450 0.95778 0.83520 0.89323 1.23138 0.95205 1.00844 0.97504 1.21396 0.95177 0.88880 0.88855 0.90643 1.42690 1.03643 1.25510 1.66245 1.19036 0.83491 1.05009 1.28623 0.91520 1.25395 0.97180 1.00273 1.01863 1.69861 1.15003 1.28440 1.49560 0.85572 0.79693 0.79575 0.77914 1.20810 1.22824 1.17372 1.23463 0.86404 0.96212 0.98950 1.48576 1.28038 1.47970 1.09118 1.18168 0.84124 0.79866 0.81843 1.90678 1.22890 1.47812 1.83642 1.20027 0.98416 1.02832 0.94274 1.20975 0.98913 0.97018 0.90623 1.21001 0.95195 0.98037 1.00220 1.18241 0.94204 0.95255 0.90931 1.19562 1.00510 1.07085 0.84669 1.22712 0.96887 0.99799 0.96753 1.70181 1.28092 1.26249 1.01251 1.25917 0.86937 0.93378 1.00959 1.43271 1.26063 1.40183 1.06100 0.72076 1.21035 1.01058 1.00489 0.91173 1.22674 0.93784 0.94171 1.02803 0.89898 0.91484 0.93867 0.90680 0.87784 0.79839 0.93418 0.90300 0.90605 0.84135 0.82810 0.80922 0.73012 0.84145 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.51 71.98 0.61 -3.01 16 2 C 0.13 3.37 3.79 45.46 0.17 3.55 16 3 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 4 C -0.13 -3.27 6.12 31.98 0.20 -3.08 16 5 C 0.17 5.36 3.59 46.18 0.17 5.53 16 6 H 0.08 2.48 8.11 -2.39 -0.02 2.46 16 7 N -0.74 -30.26 4.97 -317.32 -1.58 -31.83 16 8 C -0.23 -11.88 10.45 84.03 0.88 -11.00 16 9 H 0.07 3.74 8.06 -2.91 -0.02 3.72 16 10 C -0.05 -3.03 5.50 84.86 0.47 -2.57 16 11 N -0.98 -59.72 13.97 21.65 0.30 -59.42 16 12 Si 0.94 42.88 27.74 68.60 1.90 44.78 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 14 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 15 H -0.25 -10.06 6.51 99.48 0.65 -9.41 16 16 C 0.07 2.23 4.63 86.67 0.40 2.64 16 17 N -0.60 -17.27 3.25 -808.68 -2.63 -19.90 16 18 C 0.57 17.34 7.63 86.71 0.66 18.00 16 19 O -0.57 -19.27 13.94 -4.01 -0.06 -19.33 16 20 C -0.15 -4.14 5.88 -20.05 -0.12 -4.26 16 21 C -0.06 -1.28 9.53 22.26 0.21 -1.06 16 22 C -0.13 -2.28 9.65 22.25 0.21 -2.07 16 23 C 0.02 0.32 5.88 -20.04 -0.12 0.20 16 24 C 0.00 -0.06 6.96 40.24 0.28 0.22 16 25 C -0.01 -0.27 11.28 83.95 0.95 0.67 16 26 N -0.54 -12.21 11.22 -199.42 -2.24 -14.44 16 27 C 0.21 2.83 13.02 180.24 2.35 5.18 16 28 N -0.55 -6.74 6.06 -187.62 -1.14 -7.88 16 29 H 0.44 2.08 8.20 -92.71 -0.76 1.32 16 30 C -0.12 -2.85 9.52 22.26 0.21 -2.63 16 31 C -0.12 -3.09 8.55 22.26 0.19 -2.90 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.86 6.09 -2.39 -0.01 1.85 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 36 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.37 14.69 5.59 -92.71 -0.52 14.18 16 38 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.08 2.32 6.76 -2.39 -0.02 2.30 16 40 H 0.08 2.43 6.61 -2.38 -0.02 2.41 16 41 H 0.14 3.00 7.65 -2.91 -0.02 2.97 16 42 H 0.15 1.60 7.27 -2.91 -0.02 1.57 16 43 H 0.17 3.81 7.30 -2.91 -0.02 3.79 16 44 H 0.25 0.79 8.06 -2.91 -0.02 0.77 16 45 H 0.14 3.13 7.04 -2.91 -0.02 3.11 16 46 H 0.17 4.62 2.70 -9.73 -0.03 4.59 16 Total: -1.00 -73.16 370.60 1.99 -71.18 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.31 Total: 33.44 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 7.72 Total: 3.40 kcal Atomic # 7 Polarization: -126.19 SS G_CDS: -7.27 Total: -133.47 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.06 Total: -19.33 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.90 Total: 44.78 kcal Total: -73.16 1.99 -71.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989638617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.030 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds