Wall clock time and date at job start Tue Mar 31 2020 23:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.99649 * 2 1 4 4 C 1.54329 * 109.88447 * 238.90479 * 2 1 3 5 5 C 1.55156 * 102.94121 * 218.38954 * 4 2 1 6 6 H 1.08997 * 111.00313 * 277.38864 * 5 4 2 7 7 N 1.46501 * 111.00461 * 153.57395 * 5 4 2 8 8 C 1.36932 * 119.99845 * 154.99839 * 7 5 4 9 9 H 1.08002 * 120.00437 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99901 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00372 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99955 * 0.02562 * 10 8 7 13 13 H 1.48503 * 109.46845 * 269.99982 * 12 10 8 14 14 H 1.48503 * 109.47399 * 29.99472 * 12 10 8 15 15 H 1.48498 * 109.47295 * 150.00079 * 12 10 8 16 16 C 1.54916 * 101.58255 * 35.50024 * 5 4 2 17 17 N 1.47024 * 109.88262 * 121.09106 * 2 1 3 18 18 C 1.34773 * 125.65216 * 298.40556 * 17 2 1 19 19 O 1.21513 * 119.99619 * 359.97438 * 18 17 2 20 20 C 1.48180 * 120.00131 * 179.97438 * 18 17 2 21 21 C 1.39117 * 119.69159 * 179.73381 * 20 18 17 22 22 C 1.39294 * 118.97012 * 179.76086 * 21 20 18 23 23 N 1.39914 * 120.81918 * 180.21659 * 22 21 20 24 24 C 1.36620 * 125.67455 * 359.97438 * 23 22 21 25 25 C 1.34818 * 108.19415 * 179.83646 * 24 23 22 26 26 C 1.40987 * 107.47896 * 0.42880 * 25 24 23 27 27 C 1.34812 * 107.47770 * 359.73426 * 26 25 24 28 28 C 1.39285 * 118.35629 * 0.49693 * 22 21 20 29 29 C 1.38324 * 119.27492 * 359.73675 * 28 22 21 30 30 N 1.31601 * 120.98215 * 0.02562 * 29 28 22 31 31 H 1.08998 * 109.46873 * 181.10025 * 1 2 3 32 32 H 1.08996 * 109.46834 * 301.09616 * 1 2 3 33 33 H 1.08997 * 109.46920 * 61.09893 * 1 2 3 34 34 H 1.09000 * 110.71977 * 100.02357 * 4 2 1 35 35 H 1.09002 * 110.71507 * 336.74773 * 4 2 1 36 36 H 0.97000 * 119.99725 * 335.00273 * 7 5 4 37 37 H 0.96993 * 120.00251 * 180.02562 * 11 10 8 38 38 H 1.08995 * 110.36444 * 81.82740 * 16 5 4 39 39 H 1.09004 * 110.36203 * 204.15304 * 16 5 4 40 40 H 1.08001 * 120.51474 * 359.96579 * 21 20 18 41 41 H 1.08000 * 125.90624 * 359.96707 * 24 23 22 42 42 H 1.08003 * 126.26318 * 180.12437 * 25 24 23 43 43 H 1.07994 * 126.25680 * 179.70002 * 26 25 24 44 44 H 1.08000 * 125.89787 * 179.97438 * 27 26 25 45 45 H 1.08000 * 120.35673 * 179.75912 * 28 22 21 46 46 H 1.08006 * 119.50917 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5142 -0.6924 6 1 4.1656 -0.8690 -0.6610 7 7 3.5533 -2.7196 -1.4816 8 6 4.8165 -3.2464 -1.5227 9 1 5.6170 -2.7736 -0.9730 10 6 5.0681 -4.3888 -2.2700 11 7 6.2824 -4.8950 -2.3100 12 14 3.6834 -5.2070 -3.2202 13 1 3.0210 -6.2180 -2.3574 14 1 2.6916 -4.1811 -3.6315 15 1 4.2368 -5.8723 -4.4269 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.8073 -0.3620 2.4657 19 8 1.1420 0.6229 2.7185 20 6 2.3736 -1.1762 3.5668 21 6 2.1443 -0.8039 4.8874 22 6 2.6795 -1.5828 5.9107 23 7 2.4692 -1.2466 7.2524 24 6 1.7537 -0.1731 7.7021 25 6 1.7747 -0.1881 9.0500 26 6 2.5378 -1.3043 9.4493 27 6 2.9502 -1.9338 8.3309 28 6 3.4342 -2.7013 5.5650 29 6 3.6221 -3.0037 4.2284 30 7 3.0997 -2.2512 3.2836 31 1 -0.3633 -1.0275 0.0197 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8997 34 1 2.3529 -0.0460 -2.0201 35 1 1.3052 -1.4460 -1.6182 36 1 2.8342 -3.1444 -1.9750 37 1 6.4582 -5.6930 -2.8325 38 1 2.1887 -2.7714 0.7129 39 1 3.6717 -2.0337 1.3923 40 1 1.5576 0.0737 5.1158 41 1 1.2554 0.5595 7.0846 42 1 1.2986 0.5273 9.7043 43 1 2.7531 -1.6004 10.4653 44 1 3.5564 -2.8269 8.2938 45 1 3.8675 -3.3257 6.3322 46 1 4.2063 -3.8704 3.9560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989658385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:41 Heat of formation + Delta-G solvation = 74.654342 kcal Electronic energy + Delta-G solvation = -28909.174036 eV Core-core repulsion = 24993.217609 eV Total energy + Delta-G solvation = -3915.956427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.82666 -41.68202 -40.39266 -38.80970 -36.11954 -35.28338 -33.52729 -33.25734 -32.24693 -30.77608 -30.51738 -29.93599 -26.81226 -26.19005 -25.25846 -24.88824 -23.21499 -21.96848 -21.61394 -21.20628 -20.46725 -19.69082 -19.27693 -18.24448 -17.53267 -17.07034 -16.82607 -16.70070 -16.48648 -16.12576 -15.69326 -15.58539 -15.19571 -14.96399 -14.88832 -14.61290 -14.56147 -14.42418 -14.19686 -13.78343 -13.59558 -13.31612 -13.20919 -13.08925 -13.04757 -12.94943 -12.83747 -12.34905 -12.17200 -11.94625 -11.81359 -11.64997 -11.50060 -11.34876 -11.06629 -10.52536 -10.49531 -9.69574 -9.45489 -9.30511 -9.29396 -7.98024 -5.32933 -0.63515 -0.29888 1.24988 1.42886 1.45300 1.51579 1.53096 1.69051 1.86805 1.99281 2.52377 2.68682 2.88663 3.31003 3.32307 3.48465 3.50988 3.74510 3.79735 3.89780 3.90729 4.06597 4.07767 4.21702 4.33254 4.37282 4.44751 4.45259 4.47341 4.50667 4.64355 4.71963 4.74308 4.83953 4.97949 5.08575 5.17600 5.20589 5.23792 5.25790 5.29992 5.34847 5.50207 5.81146 5.87049 6.09375 6.24926 6.26811 6.37023 6.56745 6.96939 7.10415 7.83847 8.04032 9.22967 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014059 B = 0.002841 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.125452 B = 9853.307827 C =11476.694689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.133 3.867 3 H 0.081 0.919 4 C -0.128 4.128 5 C 0.164 3.836 6 H 0.062 0.938 7 N -0.735 5.735 8 C -0.228 4.228 9 H 0.060 0.940 10 C -0.059 4.059 11 N -0.982 5.982 12 Si 0.950 3.050 13 H -0.280 1.280 14 H -0.248 1.248 15 H -0.300 1.300 16 C 0.095 3.905 17 N -0.587 5.587 18 C 0.577 3.423 19 O -0.563 6.563 20 C 0.095 3.905 21 C -0.142 4.142 22 C 0.176 3.824 23 N -0.408 5.408 24 C -0.037 4.037 25 C -0.191 4.191 26 C -0.195 4.195 27 C -0.022 4.022 28 C -0.159 4.159 29 C 0.125 3.875 30 N -0.478 5.478 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.195 0.805 45 H 0.182 0.818 46 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 7.308 19.557 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.099 0.901 4 C -0.166 4.166 5 C 0.054 3.946 6 H 0.080 0.920 7 N -0.378 5.378 8 C -0.358 4.358 9 H 0.078 0.922 10 C -0.251 4.251 11 N -0.632 5.632 12 Si 0.778 3.222 13 H -0.206 1.206 14 H -0.173 1.173 15 H -0.227 1.227 16 C -0.030 4.030 17 N -0.318 5.318 18 C 0.364 3.636 19 O -0.443 6.443 20 C -0.043 4.043 21 C -0.165 4.165 22 C 0.074 3.926 23 N -0.082 5.082 24 C -0.161 4.161 25 C -0.215 4.215 26 C -0.218 4.218 27 C -0.146 4.146 28 C -0.181 4.181 29 C -0.034 4.034 30 N -0.191 5.191 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.169 0.831 41 H 0.190 0.810 42 H 0.177 0.823 43 H 0.182 0.818 44 H 0.212 0.788 45 H 0.199 0.801 46 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.070 7.577 18.615 22.945 hybrid contribution -0.458 -0.528 0.198 0.726 sum -11.528 7.049 18.813 23.162 Atomic orbital electron populations 1.22060 0.93599 1.02189 1.03166 1.21747 0.95413 0.96267 0.83566 0.90111 1.23022 0.97423 0.99799 0.96377 1.21488 0.96162 0.87506 0.89455 0.91974 1.42537 1.07529 1.30456 1.57228 1.18993 0.86809 1.06405 1.23637 0.92242 1.25431 0.98544 0.99160 1.01916 1.69872 1.21555 1.24894 1.46894 0.85487 0.79651 0.79014 0.78088 1.20635 1.17260 1.22704 1.23339 0.95635 0.86527 0.97501 1.48464 1.50338 1.28557 1.04463 1.17698 0.80285 0.83829 0.81751 1.90720 1.41807 1.28091 1.83698 1.20818 0.97330 0.94031 0.92092 1.21665 1.02100 1.01733 0.91041 1.18103 0.96402 0.95154 0.82903 1.41708 1.40951 1.22718 1.02804 1.22354 1.03394 0.94035 0.96358 1.21408 1.04895 1.01506 0.93648 1.21427 1.03500 0.97896 0.99018 1.22540 1.05744 1.01750 0.84584 1.22395 0.99496 0.96670 0.99537 1.23348 0.94717 0.97828 0.87489 1.67989 1.08223 1.04555 1.38333 0.92811 0.92868 0.89178 0.88296 0.89707 0.79712 0.93406 0.92318 0.88806 0.83073 0.80951 0.82290 0.81840 0.78825 0.80060 0.78705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.09 71.98 0.65 -2.98 16 2 C 0.13 3.59 3.46 45.34 0.16 3.74 16 3 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 4 C -0.13 -3.48 6.13 31.78 0.19 -3.28 16 5 C 0.16 5.84 3.71 46.39 0.17 6.01 16 6 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 7 N -0.74 -31.85 5.05 -316.37 -1.60 -33.45 16 8 C -0.23 -12.25 10.44 84.03 0.88 -11.37 16 9 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 10 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 11 N -0.98 -60.89 13.97 21.65 0.30 -60.59 16 12 Si 0.95 43.43 27.73 68.60 1.90 45.33 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 14 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16 15 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 16 C 0.10 3.23 5.63 86.86 0.49 3.72 16 17 N -0.59 -18.35 3.07 -791.01 -2.42 -20.77 16 18 C 0.58 18.67 7.63 86.89 0.66 19.33 16 19 O -0.56 -19.76 15.37 -3.76 -0.06 -19.82 16 20 C 0.09 2.75 6.72 41.86 0.28 3.03 16 21 C -0.14 -3.53 9.04 22.74 0.21 -3.32 16 22 C 0.18 3.64 6.65 38.36 0.26 3.90 16 23 N -0.41 -7.77 2.97 -346.09 -1.03 -8.80 16 24 C -0.04 -0.68 10.77 83.16 0.90 0.21 16 25 C -0.19 -3.11 10.86 22.16 0.24 -2.87 16 26 C -0.19 -2.89 10.86 22.16 0.24 -2.65 16 27 C -0.02 -0.33 10.77 83.16 0.90 0.57 16 28 C -0.16 -2.69 9.53 22.54 0.21 -2.47 16 29 C 0.12 2.60 11.17 84.75 0.95 3.55 16 30 N -0.48 -13.42 6.59 -185.14 -1.22 -14.64 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.43 6.90 -2.39 -0.02 1.42 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 35 H 0.08 2.20 7.71 -2.39 -0.02 2.18 16 36 H 0.37 15.24 5.63 -92.71 -0.52 14.72 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.09 3.42 5.88 -2.39 -0.01 3.40 16 40 H 0.15 3.65 6.42 -2.91 -0.02 3.63 16 41 H 0.17 2.81 7.09 -2.91 -0.02 2.79 16 42 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.19 1.65 7.08 -2.91 -0.02 1.63 16 45 H 0.18 1.67 6.83 -2.91 -0.02 1.65 16 46 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -71.45 376.32 4.16 -67.29 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.43 Total: 33.18 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 7.85 Total: 12.26 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -5.97 Total: -138.25 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.33 kcal Total: -71.45 4.16 -67.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989658385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.943 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds