Wall clock time and date at job start Wed Apr 1 2020 00:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 H 1.08996 * 109.49752 * 54.47198 * 4 2 1 6 6 N 1.46494 * 109.49855 * 294.40385 * 4 2 1 7 7 C 1.34777 * 120.00349 * 154.99894 * 6 4 2 8 8 O 1.21505 * 119.99507 * 0.02562 * 7 6 4 9 9 C 1.48233 * 120.00456 * 180.02562 * 7 6 4 10 10 C 1.40569 * 119.74647 * 180.02562 * 9 7 6 11 11 N 1.31265 * 120.56590 * 180.02562 * 10 9 7 12 12 C 1.33783 * 119.80887 * 0.02562 * 11 10 9 13 13 C 1.40540 * 120.99580 * 180.02562 * 12 11 10 14 14 C 1.36082 * 119.75104 * 179.97438 * 13 12 11 15 15 C 1.39473 * 121.01336 * 0.04509 * 14 13 12 16 16 C 1.35985 * 120.98540 * 359.95425 * 15 14 13 17 17 C 1.40818 * 119.70370 * 0.02562 * 16 15 14 18 18 N 1.32173 * 119.74511 * 359.73190 * 9 7 6 19 19 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 20 20 C 1.53043 * 109.53900 * 298.63512 * 19 4 2 21 21 C 1.52762 * 109.38024 * 61.24120 * 20 19 4 22 22 N 1.46923 * 109.00850 * 305.58475 * 21 20 19 23 23 C 1.36936 * 120.63133 * 233.58986 * 22 21 20 24 24 H 1.08002 * 120.00023 * 150.98059 * 23 22 21 25 25 C 1.38812 * 119.99954 * 330.97980 * 23 22 21 26 26 N 1.31617 * 120.00004 * 343.83473 * 25 23 22 27 27 Si 1.86802 * 119.99969 * 163.83966 * 25 23 22 28 28 H 1.48501 * 109.47353 * 84.97960 * 27 25 23 29 29 H 1.48495 * 109.47319 * 324.97580 * 27 25 23 30 30 H 1.48501 * 109.47125 * 204.97810 * 27 25 23 31 31 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 32 32 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 33 33 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 34 34 H 0.96998 * 120.00016 * 335.00693 * 6 4 2 35 35 H 1.07993 * 119.71888 * 0.02562 * 10 9 7 36 36 H 1.08001 * 120.12659 * 359.95539 * 13 12 11 37 37 H 1.07999 * 119.49106 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.50658 * 179.97438 * 15 14 13 39 39 H 1.08001 * 120.15122 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.45591 * 58.65791 * 19 4 2 41 41 H 1.08992 * 109.46157 * 178.61155 * 19 4 2 42 42 H 1.08995 * 109.49542 * 181.31386 * 20 19 4 43 43 H 1.08995 * 109.49583 * 301.41030 * 20 19 4 44 44 H 1.09006 * 109.50749 * 185.70770 * 21 20 19 45 45 H 1.08994 * 109.43486 * 65.42636 * 21 20 19 46 46 H 0.97001 * 120.00094 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.6030 -1.7270 1.2891 6 7 1.6699 0.0231 2.4435 7 6 1.5465 -0.6102 3.6268 8 8 1.7456 -1.8067 3.6991 9 6 1.1679 0.1527 4.8400 10 6 1.0413 -0.5133 6.0715 11 7 0.7063 0.1464 7.1557 12 6 0.4827 1.4638 7.0903 13 6 0.1233 2.1947 8.2356 14 6 -0.0978 3.5341 8.1401 15 6 0.0256 4.1976 6.9196 16 6 0.3714 3.5254 5.7892 17 6 0.6090 2.1386 5.8470 18 7 0.9577 1.4549 4.7567 19 6 3.5675 -0.8495 1.1690 20 6 3.9569 -1.6657 -0.0657 21 6 3.4645 -0.9502 -1.3223 22 7 2.0226 -0.6980 -1.1954 23 6 1.1537 -1.1107 -2.1700 24 1 0.1348 -1.3616 -1.9141 25 6 1.5824 -1.2067 -3.4867 26 7 2.6962 -0.6138 -3.8611 27 14 0.5783 -2.1772 -4.7275 28 1 -0.4893 -1.3100 -5.2873 29 1 -0.0377 -3.3502 -4.0568 30 1 1.4638 -2.6431 -5.8248 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8925 34 1 1.5112 0.9783 2.3859 35 1 1.2210 -1.5767 6.1260 36 1 0.0227 1.6953 9.1879 37 1 -0.3741 4.0916 9.0229 38 1 -0.1559 5.2611 6.8715 39 1 0.4628 4.0526 4.8510 40 1 4.0061 0.1459 1.0995 41 1 3.9379 -1.3475 2.0650 42 1 5.0412 -1.7695 -0.1060 43 1 3.4984 -2.6528 -0.0087 44 1 3.6504 -1.5769 -2.1946 45 1 3.9929 -0.0031 -1.4310 46 1 2.9955 -0.6805 -4.7813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993416988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:31 Heat of formation + Delta-G solvation = 55.867318 kcal Electronic energy + Delta-G solvation = -29064.791524 eV Core-core repulsion = 25148.020431 eV Total energy + Delta-G solvation = -3916.771094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83462 -39.77805 -38.01130 -37.35708 -35.31372 -34.32325 -32.60790 -31.77482 -31.25852 -30.98445 -29.19451 -26.56570 -25.88445 -25.07510 -24.70720 -22.65979 -22.42135 -20.78372 -20.69246 -19.63012 -18.80158 -18.67284 -17.65455 -16.44309 -16.09495 -15.78164 -15.74236 -15.30379 -14.89610 -14.74729 -14.55046 -14.30600 -13.97715 -13.77180 -13.63195 -13.36579 -12.84528 -12.58540 -12.36613 -12.27476 -12.19701 -12.07470 -12.04947 -11.72963 -11.54680 -11.11980 -10.93693 -10.74459 -10.59883 -10.42848 -10.30201 -10.09636 -10.05318 -9.75168 -9.49913 -9.37978 -9.31941 -9.02859 -8.72634 -8.45689 -6.68609 -5.80133 -3.23584 -0.34028 0.05346 1.46079 2.13922 2.99183 2.99707 3.37305 3.44534 3.47013 3.59320 3.70668 3.71569 3.88051 4.35345 4.44707 4.49877 4.66994 4.71004 4.81530 5.02186 5.27844 5.37716 5.42279 5.44091 5.49950 5.57668 5.62924 5.76746 5.77094 5.88523 5.95463 6.06339 6.20230 6.21672 6.31425 6.40929 6.51226 6.57313 6.68009 6.73984 6.77385 6.84045 6.97384 7.04987 7.24753 7.39363 7.64731 7.66746 7.81326 8.21430 8.43817 9.19429 9.82308 10.38381 11.28781 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021134 B = 0.002443 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.553302 B =11456.822477 C =11905.517948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.128 3.872 5 H 0.090 0.910 6 N -0.692 5.692 7 C 0.569 3.431 8 O -0.527 6.527 9 C 0.067 3.933 10 C 0.128 3.872 11 N -0.427 5.427 12 C 0.091 3.909 13 C -0.089 4.089 14 C -0.090 4.090 15 C -0.103 4.103 16 C -0.073 4.073 17 C 0.076 3.924 18 N -0.393 5.393 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.169 3.831 22 N -0.581 5.581 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.280 1.280 30 H -0.290 1.290 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.188 0.812 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.019 0.981 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 8.978 22.681 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.047 0.953 4 C 0.023 3.977 5 H 0.108 0.892 6 N -0.341 5.341 7 C 0.351 3.649 8 O -0.403 6.403 9 C -0.090 4.090 10 C -0.047 4.047 11 N -0.140 5.140 12 C -0.034 4.034 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.123 4.123 16 C -0.093 4.093 17 C -0.050 4.050 18 N -0.111 5.111 19 C -0.156 4.156 20 C -0.179 4.179 21 C 0.043 3.957 22 N -0.304 5.304 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.194 4.194 26 N -0.546 5.546 27 Si 0.731 3.269 28 H -0.213 1.213 29 H -0.205 1.205 30 H -0.216 1.216 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.205 0.795 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.037 0.963 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.289 8.265 22.577 24.267 hybrid contribution -0.457 0.024 -0.705 0.840 sum -3.747 8.289 21.873 23.689 Atomic orbital electron populations 1.21835 0.95623 1.01689 1.00386 1.20550 0.93297 0.93637 0.86491 0.95311 1.21942 0.95406 0.96976 0.83422 0.89207 1.46029 1.67381 1.12995 1.07696 1.17610 0.78342 0.86480 0.82440 1.90810 1.50805 1.13612 1.85044 1.22649 0.99106 0.90862 0.96389 1.24019 0.91494 1.02253 0.86950 1.68839 1.09000 1.06620 1.29572 1.19816 0.98346 0.90955 0.94303 1.20826 0.98882 0.93825 0.97301 1.21107 0.97363 0.94183 0.98388 1.21052 0.98289 1.00915 0.92090 1.20938 0.97419 0.90886 1.00036 1.19618 1.00306 0.95620 0.89475 1.68537 1.05940 1.06860 1.29719 1.21773 0.95062 1.00253 0.98510 1.22111 0.99328 0.99743 0.96752 1.20755 0.83102 0.97269 0.94551 1.44026 1.03207 1.65140 1.18072 1.19141 0.94729 1.38114 0.86191 0.91191 1.25057 0.97872 0.99618 0.96896 1.70029 1.23878 1.43818 1.16844 0.86342 0.79353 0.80197 0.81037 1.21342 1.20515 1.21585 0.92640 0.94269 0.91644 0.75800 0.79479 0.84068 0.84500 0.84406 0.83771 0.92621 0.93060 0.92869 0.92428 0.89345 0.96294 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.82 37.16 0.29 -2.28 16 2 C 0.17 3.37 3.04 -67.60 -0.21 3.16 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.13 2.30 1.99 -67.81 -0.14 2.17 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 6 N -0.69 -10.55 4.58 -54.51 -0.25 -10.80 16 7 C 0.57 8.76 7.78 -12.15 -0.09 8.66 16 8 O -0.53 -9.41 15.98 5.36 0.09 -9.32 16 9 C 0.07 0.89 6.76 -82.73 -0.56 0.33 16 10 C 0.13 1.56 10.75 -16.92 -0.18 1.38 16 11 N -0.43 -5.16 10.45 -10.53 -0.11 -5.27 16 12 C 0.09 1.00 6.60 -84.70 -0.56 0.45 16 13 C -0.09 -0.70 9.98 -39.49 -0.39 -1.10 16 14 C -0.09 -0.51 9.95 -39.90 -0.40 -0.91 16 15 C -0.10 -0.61 9.95 -39.93 -0.40 -1.00 16 16 C -0.07 -0.61 9.99 -39.42 -0.39 -1.00 16 17 C 0.08 0.86 6.60 -84.79 -0.56 0.30 16 18 N -0.39 -4.97 9.64 -7.39 -0.07 -5.04 16 19 C -0.12 -2.09 5.46 -26.69 -0.15 -2.24 16 20 C -0.14 -2.71 6.07 -26.83 -0.16 -2.87 16 21 C 0.17 3.95 5.26 -3.93 -0.02 3.92 16 22 N -0.58 -14.02 3.00 -165.04 -0.49 -14.52 16 23 C -0.25 -6.66 8.60 -15.06 -0.13 -6.79 16 24 H 0.07 1.81 6.21 -52.49 -0.33 1.48 16 25 C 0.00 0.12 4.93 -17.43 -0.09 0.03 16 26 N -0.90 -25.61 11.21 55.49 0.62 -24.99 16 27 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 31 H 0.05 1.08 7.45 -51.93 -0.39 0.69 16 32 H 0.04 0.62 7.80 -51.93 -0.41 0.21 16 33 H 0.06 1.30 7.62 -51.93 -0.40 0.90 16 34 H 0.41 5.61 7.94 -40.82 -0.32 5.29 16 35 H 0.19 2.01 7.62 -52.49 -0.40 1.61 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.09 2.32 6.10 -51.93 -0.32 2.00 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -31.05 374.98 -10.04 -41.08 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.31 Total: 4.60 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -4.13 Total: 2.22 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.30 Total: -60.62 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.05 -10.04 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993416988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.949 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds