Wall clock time and date at job start Wed Apr 1 2020 00:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.52739 * 2 1 4 4 C 1.53196 * 109.49861 * 120.09100 * 2 1 3 5 5 N 1.46924 * 108.77379 * 174.58358 * 4 2 1 6 6 C 1.34777 * 120.62827 * 126.41403 * 5 4 2 7 7 O 1.21502 * 120.00205 * 352.75134 * 6 5 4 8 8 C 1.48287 * 119.99984 * 172.76060 * 6 5 4 9 9 C 1.40362 * 119.18807 * 164.48046 * 8 6 5 10 10 C 1.36559 * 119.82490 * 179.71246 * 9 8 6 11 11 C 1.40552 * 118.05747 * 0.54299 * 10 9 8 12 12 C 1.40525 * 122.20931 * 179.72915 * 11 10 9 13 13 C 1.36256 * 118.68428 * 179.97438 * 12 11 10 14 14 N 1.32582 * 121.80061 * 0.04221 * 13 12 11 15 15 C 1.31120 * 122.88108 * 359.97340 * 14 13 12 16 16 C 1.40857 * 119.95595 * 0.02562 * 15 14 13 17 17 N 1.31891 * 119.18371 * 344.74497 * 8 6 5 18 18 C 1.46921 * 118.74279 * 306.38681 * 5 4 2 19 19 C 1.53197 * 108.77312 * 53.60878 * 18 5 4 20 20 C 1.53036 * 109.31213 * 305.36620 * 19 18 5 21 21 H 1.09005 * 109.45692 * 181.38264 * 20 19 18 22 22 N 1.46496 * 109.46435 * 301.34435 * 20 19 18 23 23 C 1.36942 * 120.00332 * 275.00280 * 22 20 19 24 24 H 1.07999 * 119.99519 * 359.97438 * 23 22 20 25 25 C 1.38808 * 120.00308 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99912 * 179.97438 * 25 23 22 27 27 Si 1.86799 * 119.99770 * 0.02562 * 25 23 22 28 28 H 1.48497 * 109.47586 * 90.00102 * 27 25 23 29 29 H 1.48508 * 109.46956 * 209.99721 * 27 25 23 30 30 H 1.48495 * 109.47155 * 329.99317 * 27 25 23 31 31 H 1.08994 * 109.47873 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46699 * 300.07777 * 1 2 3 33 33 H 1.09004 * 109.47432 * 60.06957 * 1 2 3 34 34 H 1.08998 * 109.58770 * 54.79365 * 4 2 1 35 35 H 1.09003 * 109.69613 * 294.43691 * 4 2 1 36 36 H 1.08007 * 120.09114 * 359.97438 * 9 8 6 37 37 H 1.07998 * 120.97283 * 180.26170 * 10 9 8 38 38 H 1.07998 * 120.65630 * 359.94920 * 12 11 10 39 39 H 1.07995 * 119.10031 * 180.02562 * 13 12 11 40 40 H 1.07998 * 120.02339 * 180.02562 * 15 14 13 41 41 H 1.09004 * 109.58801 * 293.82700 * 18 5 4 42 42 H 1.08992 * 109.58919 * 173.39998 * 18 5 4 43 43 H 1.09007 * 109.49418 * 185.41564 * 19 18 5 44 44 H 1.09002 * 109.52248 * 65.33969 * 19 18 5 45 45 H 0.96998 * 120.00209 * 94.99817 * 22 20 19 46 46 H 0.97006 * 119.99652 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 3.5046 -0.8294 1.1694 6 6 4.2811 -0.3868 2.1781 7 8 3.7846 0.2224 3.1048 8 6 5.7415 -0.6433 2.1571 9 6 6.5770 0.0861 3.0173 10 6 7.9231 -0.1437 3.0129 11 6 8.4260 -1.1093 2.1239 12 6 9.7960 -1.4113 2.0427 13 6 10.2049 -2.3610 1.1552 14 7 9.3474 -3.0010 0.3723 15 6 8.0566 -2.7715 0.3930 16 6 7.5275 -1.8085 1.2743 17 7 6.2237 -1.5474 1.3267 18 6 4.1052 -1.4268 -0.0310 19 6 3.5707 -0.6950 -1.2662 20 6 2.0407 -0.7231 -1.2484 21 1 1.6581 -0.2243 -2.1389 22 7 1.5781 -2.1130 -1.2310 23 6 1.4466 -2.8056 -2.4050 24 1 1.6834 -2.3270 -3.3437 25 6 1.0088 -4.1228 -2.3884 26 7 0.8818 -4.7883 -3.5169 27 14 0.5985 -4.9502 -0.7647 28 1 -0.8351 -4.7306 -0.4455 29 1 0.8643 -6.4075 -0.8707 30 1 1.4400 -4.3707 0.3127 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8894 33 1 -0.3634 0.5128 -0.8906 34 1 1.6052 -1.7218 1.2978 35 1 1.7637 -0.1603 2.1402 36 1 6.1560 0.8241 3.6841 37 1 8.5826 0.4037 3.6699 38 1 10.5107 -0.9005 2.6709 39 1 11.2562 -2.5986 1.0875 40 1 7.3996 -3.3205 -0.2652 41 1 3.8374 -2.4819 -0.0871 42 1 5.1894 -1.3248 0.0135 43 1 3.9333 -1.1897 -2.1673 44 1 3.9159 0.3389 -1.2548 45 1 1.3651 -2.5427 -0.3879 46 1 0.5755 -5.7087 -3.5053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036114404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:39 Heat of formation + Delta-G solvation = 48.384698 kcal Electronic energy + Delta-G solvation = -29926.219140 eV Core-core repulsion = 26009.123575 eV Total energy + Delta-G solvation = -3917.095564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54902 -41.29293 -39.52673 -38.69390 -36.11223 -35.07565 -34.33417 -33.17918 -32.64365 -31.59816 -31.43662 -28.09446 -27.15179 -26.01673 -25.23840 -24.93034 -23.75798 -23.02775 -21.88260 -20.13719 -19.81474 -19.38634 -18.84434 -18.35041 -17.42307 -16.98893 -16.76045 -16.55155 -16.15258 -15.93291 -15.70671 -15.46115 -15.29075 -15.12155 -15.03627 -14.55242 -14.46881 -14.41104 -14.18511 -13.75113 -13.62529 -13.32632 -13.12932 -12.98621 -12.91995 -12.67509 -12.49239 -12.17290 -12.06705 -11.95417 -11.84885 -11.70436 -11.60420 -11.22305 -11.00352 -10.67660 -10.49406 -10.21674 -9.71426 -9.51064 -9.21845 -7.98496 -5.29006 -1.09158 -0.56209 0.65250 1.28596 1.35963 1.37009 1.43737 1.79016 2.09448 2.48703 2.70452 2.93867 3.28571 3.33459 3.36750 3.43698 3.60862 3.61132 3.68865 3.79050 3.97329 4.01654 4.06083 4.20944 4.34338 4.38692 4.48122 4.50646 4.59087 4.62129 4.68950 4.72487 4.77546 4.82437 4.99097 5.02950 5.06939 5.10584 5.18195 5.23044 5.25508 5.38199 5.42941 5.50122 5.61840 5.83801 6.21645 6.26129 6.36647 6.83892 6.91550 7.12284 7.89070 8.07568 9.23550 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003793 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.959679 B = 7380.880225 C = 8865.630147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.563 3.437 7 O -0.560 6.560 8 C 0.104 3.896 9 C -0.117 4.117 10 C -0.040 4.040 11 C -0.075 4.075 12 C -0.129 4.129 13 C 0.070 3.930 14 N -0.492 5.492 15 C 0.158 3.842 16 C 0.041 3.959 17 N -0.434 5.434 18 C 0.101 3.899 19 C -0.145 4.145 20 C 0.177 3.823 21 H 0.050 0.950 22 N -0.741 5.741 23 C -0.213 4.213 24 H 0.061 0.939 25 C -0.057 4.057 26 N -0.984 5.984 27 Si 0.939 3.061 28 H -0.279 1.279 29 H -0.300 1.300 30 H -0.261 1.261 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.166 0.834 37 H 0.198 0.802 38 H 0.188 0.812 39 H 0.190 0.810 40 H 0.171 0.829 41 H 0.049 0.951 42 H 0.136 0.864 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.361 0.639 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.039 13.239 16.370 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.007 4.007 5 N -0.312 5.312 6 C 0.350 3.650 7 O -0.439 6.439 8 C -0.049 4.049 9 C -0.138 4.138 10 C -0.065 4.065 11 C -0.082 4.082 12 C -0.149 4.149 13 C -0.072 4.072 14 N -0.201 5.201 15 C -0.015 4.015 16 C -0.084 4.084 17 N -0.148 5.148 18 C -0.021 4.021 19 C -0.185 4.185 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.385 5.385 23 C -0.344 4.344 24 H 0.079 0.921 25 C -0.249 4.249 26 N -0.635 5.635 27 Si 0.768 3.232 28 H -0.205 1.205 29 H -0.227 1.227 30 H -0.186 1.186 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.183 0.817 37 H 0.215 0.785 38 H 0.205 0.795 39 H 0.207 0.793 40 H 0.188 0.812 41 H 0.068 0.932 42 H 0.153 0.847 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.196 0.804 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.740 12.404 15.513 27.307 hybrid contribution -0.683 -0.357 1.148 1.383 sum 18.057 12.048 16.661 27.364 Atomic orbital electron populations 1.21653 0.93448 1.01783 1.02401 1.21662 0.97038 0.99655 0.93582 0.89028 1.21728 0.78648 1.00600 0.99716 1.48069 1.06923 1.58066 1.18131 1.18238 0.85751 0.78823 0.82159 1.90730 1.74564 1.42362 1.36254 1.21404 0.94100 0.94836 0.94592 1.21991 0.94126 0.99626 0.98079 1.21894 0.94960 0.94063 0.95589 1.19411 0.95810 0.96682 0.96286 1.22344 0.93900 0.98592 1.00016 1.22968 1.00866 0.92277 0.91100 1.67543 1.03395 1.26053 1.23134 1.23299 0.91609 0.92349 0.94292 1.20210 0.89549 0.99344 0.99249 1.67864 1.14107 1.14975 1.17806 1.22561 1.01351 0.96187 0.82039 1.22434 0.98269 1.00108 0.97721 1.20426 0.92184 0.84146 0.96388 0.93177 1.42782 1.80716 1.10768 1.04220 1.19005 1.34556 0.94007 0.86805 0.92085 1.25264 1.03012 0.97608 0.98975 1.69856 1.55791 1.11092 1.26778 0.85654 0.78515 0.77613 0.81416 1.20540 1.22701 1.18640 0.93869 0.90886 0.92053 0.92697 0.88425 0.81674 0.78507 0.79520 0.79305 0.81188 0.93244 0.84738 0.92092 0.91060 0.80439 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.05 71.98 0.65 -3.17 16 2 C -0.10 -2.96 2.67 -10.71 -0.03 -2.99 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.12 3.58 5.43 86.36 0.47 4.05 16 5 N -0.58 -18.35 2.97 -821.81 -2.44 -20.79 16 6 C 0.56 17.07 7.63 86.92 0.66 17.73 16 7 O -0.56 -18.53 15.81 -3.72 -0.06 -18.59 16 8 C 0.10 2.64 6.49 42.33 0.27 2.92 16 9 C -0.12 -2.09 9.53 22.39 0.21 -1.87 16 10 C -0.04 -0.47 9.93 22.44 0.22 -0.25 16 11 C -0.07 -1.21 5.75 -21.21 -0.12 -1.33 16 12 C -0.13 -1.34 9.88 22.37 0.22 -1.11 16 13 C 0.07 0.95 11.07 84.12 0.93 1.88 16 14 N -0.49 -10.38 10.28 -195.22 -2.01 -12.39 16 15 C 0.16 3.62 11.26 85.44 0.96 4.58 16 16 C 0.04 0.94 6.62 40.55 0.27 1.21 16 17 N -0.43 -11.47 6.26 -177.68 -1.11 -12.58 16 18 C 0.10 3.31 5.56 86.37 0.48 3.79 16 19 C -0.14 -4.82 5.78 30.67 0.18 -4.65 16 20 C 0.18 6.41 2.53 45.02 0.11 6.53 16 21 H 0.05 1.92 8.08 -2.38 -0.02 1.90 16 22 N -0.74 -33.09 3.44 -322.81 -1.11 -34.20 16 23 C -0.21 -11.71 10.41 84.03 0.87 -10.83 16 24 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 25 C -0.06 -3.34 5.50 84.86 0.47 -2.88 16 26 N -0.98 -62.78 13.97 21.65 0.30 -62.48 16 27 Si 0.94 46.09 27.74 68.60 1.90 47.99 16 28 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 29 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 30 H -0.26 -11.90 6.52 99.48 0.65 -11.25 16 31 H 0.04 1.41 7.54 -2.39 -0.02 1.39 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.05 1.87 6.64 -2.39 -0.02 1.85 16 35 H 0.10 2.87 7.00 -2.39 -0.02 2.85 16 36 H 0.17 2.53 7.68 -2.91 -0.02 2.50 16 37 H 0.20 0.46 8.06 -2.91 -0.02 0.44 16 38 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 39 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.17 3.89 8.06 -2.91 -0.02 3.87 16 41 H 0.05 1.92 7.74 -2.39 -0.02 1.90 16 42 H 0.14 4.12 4.21 -45.62 -0.19 3.93 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.36 16.06 3.79 -92.71 -0.35 15.71 16 46 H 0.25 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -74.06 368.31 2.74 -71.33 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.42 Total: 28.11 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.84 Total: 13.61 kcal Atomic # 7 Polarization: -136.07 SS G_CDS: -6.37 Total: -142.44 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.06 Total: -18.59 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -74.06 2.74 -71.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036114404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.712 kcal (2) G-P(sol) polarization free energy of solvation -74.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds