Wall clock time and date at job start Wed Apr 1 2020 00:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.49493 * 2 1 4 4 C 1.53198 * 109.49526 * 120.09762 * 2 1 3 5 5 N 1.46925 * 108.77272 * 174.58597 * 4 2 1 6 6 C 1.34776 * 120.62727 * 126.38930 * 5 4 2 7 7 O 1.21551 * 119.99712 * 179.79011 * 6 5 4 8 8 C 1.47918 * 120.00292 * 359.78448 * 6 5 4 9 9 C 1.38939 * 119.84640 * 201.87225 * 8 6 5 10 10 C 1.40650 * 117.38282 * 179.75403 * 9 8 6 11 11 C 1.40263 * 122.02932 * 180.22505 * 10 9 8 12 12 C 1.36272 * 119.47049 * 180.29961 * 11 10 9 13 13 C 1.39323 * 120.87103 * 359.97438 * 12 11 10 14 14 C 1.36221 * 121.16243 * 0.02562 * 13 12 11 15 15 C 1.40339 * 119.68141 * 359.97438 * 14 13 12 16 16 N 1.33821 * 121.62422 * 179.97438 * 15 14 13 17 17 N 1.28440 * 121.68317 * 180.02562 * 16 15 14 18 18 C 1.46928 * 118.76526 * 306.41053 * 5 4 2 19 19 C 1.53188 * 108.77173 * 53.55804 * 18 5 4 20 20 C 1.53035 * 109.49885 * 239.93040 * 2 1 3 21 21 H 1.09006 * 109.45733 * 58.66577 * 20 2 1 22 22 N 1.46498 * 109.45242 * 298.70229 * 20 2 1 23 23 C 1.36941 * 119.99917 * 154.93569 * 22 20 2 24 24 H 1.07995 * 120.00506 * 0.02562 * 23 22 20 25 25 C 1.38813 * 119.99510 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99728 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00225 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46726 * 90.00366 * 27 25 23 29 29 H 1.48500 * 109.47202 * 210.00183 * 27 25 23 30 30 H 1.48500 * 109.47154 * 330.00425 * 27 25 23 31 31 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47004 * 300.06274 * 1 2 3 33 33 H 1.08997 * 109.47322 * 60.06720 * 1 2 3 34 34 H 1.08997 * 109.58229 * 294.37001 * 4 2 1 35 35 H 1.08998 * 109.58887 * 54.65426 * 4 2 1 36 36 H 1.08001 * 121.30743 * 359.97438 * 9 8 6 37 37 H 1.08001 * 120.26649 * 0.27570 * 11 10 9 38 38 H 1.08004 * 119.56054 * 179.97438 * 12 11 10 39 39 H 1.08004 * 119.41549 * 179.97438 * 13 12 11 40 40 H 1.08001 * 120.16345 * 179.97438 * 14 13 12 41 41 H 1.08998 * 109.56202 * 293.78111 * 18 5 4 42 42 H 1.09006 * 109.61265 * 173.35705 * 18 5 4 43 43 H 1.09007 * 109.49824 * 185.44325 * 19 18 5 44 44 H 1.09002 * 109.50177 * 65.38245 * 19 18 5 45 45 H 0.96996 * 119.99659 * 334.93780 * 22 20 2 46 46 H 0.97003 * 120.00084 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5046 -0.8295 1.1694 6 6 4.2811 -0.3866 2.1780 7 8 5.4903 -0.4829 2.1014 8 6 3.6617 0.2167 3.3782 9 6 4.4066 1.0645 4.1887 10 6 3.7648 1.6134 5.3134 11 6 4.4230 2.4842 6.1942 12 6 3.7526 2.9810 7.2716 13 6 2.4237 2.6357 7.5081 14 6 1.7550 1.7927 6.6727 15 6 2.4108 1.2601 5.5521 16 7 1.7915 0.4283 4.7063 17 7 2.3908 -0.0603 3.6807 18 6 4.1059 -1.4263 -0.0311 19 6 3.5708 -0.6947 -1.2661 20 6 2.0408 -0.7228 -1.2484 21 1 1.6582 -0.2239 -2.1389 22 7 1.5783 -2.1128 -1.2310 23 6 1.4468 -2.8054 -2.4050 24 1 1.6845 -2.3272 -3.3437 25 6 1.0091 -4.1226 -2.3883 26 7 0.8832 -4.7885 -3.5166 27 14 0.6001 -4.9505 -0.7645 28 1 -0.8333 -4.7309 -0.4442 29 1 0.8660 -6.4076 -0.8709 30 1 1.4423 -4.3710 0.3126 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3634 0.5128 -0.8906 34 1 1.7638 -0.1585 2.1388 35 1 1.6032 -1.7211 1.2990 36 1 5.4369 1.2958 3.9619 37 1 5.4530 2.7584 6.0203 38 1 4.2581 3.6512 7.9511 39 1 1.9151 3.0428 8.3695 40 1 0.7251 1.5356 6.8717 41 1 3.8387 -2.4815 -0.0870 42 1 5.1902 -1.3236 0.0132 43 1 3.9335 -1.1891 -2.1674 44 1 3.9159 0.3392 -1.2545 45 1 1.3652 -2.5424 -0.3879 46 1 0.5776 -5.7091 -3.5050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036131504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:56 Heat of formation + Delta-G solvation = 58.103542 kcal Electronic energy + Delta-G solvation = -29734.176990 eV Core-core repulsion = 25817.502867 eV Total energy + Delta-G solvation = -3916.674124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.65900 -41.25825 -39.37441 -38.78282 -36.04180 -34.88946 -34.35033 -33.54722 -32.66798 -31.78684 -31.24209 -27.70605 -27.15872 -26.46910 -25.73926 -24.81574 -23.50794 -23.06501 -21.79019 -20.14659 -19.88218 -19.80460 -19.21905 -17.91855 -17.42440 -16.93089 -16.87268 -16.63890 -16.09640 -15.82829 -15.69041 -15.46005 -15.41937 -15.14094 -15.01151 -14.57832 -14.53948 -14.33152 -13.86916 -13.59223 -13.43791 -13.29942 -13.03812 -12.98063 -12.83861 -12.70827 -12.51170 -12.13180 -12.06958 -11.97786 -11.95232 -11.89341 -11.68831 -11.50565 -11.06512 -10.94130 -10.68403 -10.34629 -9.79003 -9.45108 -9.25299 -7.99687 -5.30247 -1.18013 -0.78386 0.63811 1.17695 1.36585 1.36931 1.43343 1.71449 1.94050 2.47987 2.61849 2.79153 3.13285 3.19475 3.32294 3.39483 3.60128 3.66004 3.70649 3.78956 4.01978 4.07165 4.12993 4.18452 4.21708 4.34313 4.40011 4.45495 4.50805 4.55682 4.65164 4.74780 4.91233 4.91510 4.98733 5.01850 5.06381 5.08997 5.12072 5.19730 5.24708 5.26904 5.33214 5.45809 5.55664 5.70506 5.82615 6.20736 6.25306 6.78843 7.11050 7.31442 7.88048 8.06558 9.22231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.003021 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.412864 B = 9266.766301 C = 9755.097075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.104 4.104 3 H 0.089 0.911 4 C 0.090 3.910 5 N -0.582 5.582 6 C 0.573 3.427 7 O -0.565 6.565 8 C -0.028 4.028 9 C -0.024 4.024 10 C -0.081 4.081 11 C -0.100 4.100 12 C -0.082 4.082 13 C -0.071 4.071 14 C -0.100 4.100 15 C 0.055 3.945 16 N -0.228 5.228 17 N -0.209 5.209 18 C 0.121 3.879 19 C -0.139 4.139 20 C 0.177 3.823 21 H 0.054 0.946 22 N -0.742 5.742 23 C -0.213 4.213 24 H 0.063 0.937 25 C -0.059 4.059 26 N -0.983 5.983 27 Si 0.939 3.061 28 H -0.277 1.277 29 H -0.299 1.299 30 H -0.263 1.263 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.052 0.948 36 H 0.180 0.820 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.362 0.638 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 22.458 27.419 35.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.033 4.033 5 N -0.311 5.311 6 C 0.360 3.640 7 O -0.444 6.444 8 C -0.160 4.160 9 C -0.053 4.053 10 C -0.089 4.089 11 C -0.119 4.119 12 C -0.101 4.101 13 C -0.091 4.091 14 C -0.121 4.121 15 C -0.073 4.073 16 N -0.082 5.082 17 N -0.066 5.066 18 C -0.001 4.001 19 C -0.179 4.179 20 C 0.069 3.931 21 H 0.072 0.928 22 N -0.386 5.386 23 C -0.344 4.344 24 H 0.081 0.919 25 C -0.251 4.251 26 N -0.635 5.635 27 Si 0.768 3.232 28 H -0.203 1.203 29 H -0.227 1.227 30 H -0.188 1.188 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.070 0.930 36 H 0.197 0.803 37 H 0.184 0.816 38 H 0.194 0.806 39 H 0.193 0.807 40 H 0.173 0.827 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.196 0.804 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.853 21.555 26.709 34.664 hybrid contribution 0.811 -0.933 0.218 1.255 sum 5.664 20.623 26.927 34.387 Atomic orbital electron populations 1.21621 0.93421 1.01805 1.02205 1.21728 0.97135 0.99556 0.93922 0.89246 1.22806 0.77502 1.01711 1.01257 1.48050 1.08080 1.57645 1.17337 1.17839 0.85834 0.78068 0.82283 1.90749 1.14102 1.58905 1.80695 1.22284 0.93623 1.01628 0.98504 1.22737 1.01581 0.90394 0.90618 1.19070 0.94198 0.99211 0.96437 1.21421 1.01761 0.95023 0.93660 1.21687 0.94374 0.97648 0.96409 1.21641 0.94659 0.93864 0.98926 1.21098 1.01783 0.97317 0.91857 1.20863 0.92733 0.96285 0.97408 1.73816 1.29124 1.06727 0.98557 1.73061 1.07160 1.17109 1.09299 1.21513 0.98376 0.96761 0.83416 1.22360 0.98557 1.00227 0.96771 1.20430 0.91750 0.84250 0.96684 0.92800 1.42814 1.80671 1.10796 1.04281 1.19020 1.34517 0.94020 0.86836 0.91937 1.25290 1.03060 0.97665 0.99051 1.69854 1.55817 1.11068 1.26754 0.85653 0.78672 0.77577 0.81311 1.20308 1.22655 1.18810 0.93862 0.91143 0.92002 0.84183 0.93015 0.80268 0.81574 0.80630 0.80689 0.82736 0.92670 0.89540 0.91746 0.90565 0.80390 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.05 71.98 0.65 -3.26 16 2 C -0.10 -3.19 2.67 -10.71 -0.03 -3.22 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.09 2.92 4.97 86.36 0.43 3.35 16 5 N -0.58 -19.65 2.97 -822.21 -2.44 -22.10 16 6 C 0.57 18.86 7.61 86.81 0.66 19.52 16 7 O -0.56 -20.54 15.97 -3.88 -0.06 -20.61 16 8 C -0.03 -0.77 6.51 41.62 0.27 -0.50 16 9 C -0.02 -0.49 9.51 23.03 0.22 -0.28 16 10 C -0.08 -1.37 5.75 -21.28 -0.12 -1.49 16 11 C -0.10 -0.83 9.81 22.30 0.22 -0.61 16 12 C -0.08 -0.30 9.96 22.07 0.22 -0.08 16 13 C -0.07 -0.34 9.94 22.06 0.22 -0.12 16 14 C -0.10 -1.19 10.00 22.31 0.22 -0.96 16 15 C 0.05 1.08 6.69 40.27 0.27 1.35 16 16 N -0.23 -5.94 11.55 -51.93 -0.60 -6.54 16 17 N -0.21 -6.08 7.53 -48.75 -0.37 -6.45 16 18 C 0.12 4.37 6.17 86.36 0.53 4.90 16 19 C -0.14 -4.83 5.78 30.67 0.18 -4.65 16 20 C 0.18 6.61 2.53 45.02 0.11 6.72 16 21 H 0.05 2.09 8.08 -2.38 -0.02 2.07 16 22 N -0.74 -34.01 3.45 -322.82 -1.11 -35.12 16 23 C -0.21 -11.92 10.41 84.03 0.87 -11.05 16 24 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 25 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 26 N -0.98 -63.57 13.97 21.65 0.30 -63.27 16 27 Si 0.94 47.09 27.73 68.60 1.90 49.00 16 28 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 29 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 30 H -0.26 -12.37 6.52 99.48 0.65 -11.72 16 31 H 0.04 1.47 7.54 -2.39 -0.02 1.45 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.14 4.29 3.98 -89.30 -0.36 3.93 16 35 H 0.05 1.88 6.64 -2.39 -0.02 1.87 16 36 H 0.18 3.01 7.84 -2.91 -0.02 2.98 16 37 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.18 -0.64 8.06 -2.91 -0.02 -0.66 16 39 H 0.18 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.05 2.26 7.74 -2.39 -0.02 2.24 16 42 H 0.09 3.04 7.00 -2.38 -0.02 3.02 16 43 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.36 16.61 3.79 -92.71 -0.35 16.26 16 46 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -76.86 368.69 3.28 -73.58 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.26 Total: 24.96 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 5.40 Total: 6.55 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -4.22 Total: -133.48 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.61 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.90 Total: 49.00 kcal Total: -76.86 3.28 -73.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036131504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.683 kcal (2) G-P(sol) polarization free energy of solvation -76.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds