Wall clock time and date at job start Tue Mar 31 2020 23:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.58485 * 2 1 4 4 C 1.53190 * 109.58776 * 120.28098 * 2 1 3 5 5 C 1.53047 * 109.31555 * 174.42201 * 4 2 1 6 6 H 1.08998 * 109.45850 * 178.62554 * 5 4 2 7 7 N 1.46504 * 109.45555 * 58.65595 * 5 4 2 8 8 C 1.36935 * 119.99300 * 154.99964 * 7 5 4 9 9 H 1.07998 * 120.00313 * 359.72940 * 8 7 5 10 10 C 1.38815 * 119.99724 * 179.72220 * 8 7 5 11 11 N 1.31619 * 119.99785 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00236 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47012 * 60.00203 * 12 10 8 14 14 H 1.48499 * 109.47356 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46861 * 300.00050 * 12 10 8 16 16 C 1.53033 * 109.53627 * 298.63761 * 5 4 2 17 17 C 1.53189 * 109.31330 * 61.36587 * 16 5 4 18 18 N 1.46928 * 109.58920 * 239.57300 * 2 1 3 19 19 C 1.34773 * 120.62855 * 6.58036 * 18 2 1 20 20 O 1.21553 * 120.00067 * 6.26104 * 19 18 2 21 21 C 1.47870 * 119.99888 * 186.25690 * 19 18 2 22 22 C 1.40610 * 119.75663 * 33.77127 * 21 19 18 23 23 C 1.35723 * 120.83867 * 179.97438 * 22 21 19 24 24 C 1.40711 * 120.08141 * 359.97438 * 23 22 21 25 25 N 1.33795 * 120.85975 * 180.02562 * 24 23 22 26 26 C 1.31327 * 119.76396 * 179.91537 * 25 24 23 27 27 C 1.39757 * 120.71013 * 0.09532 * 26 25 24 28 28 N 1.31271 * 120.67531 * 359.92593 * 27 26 25 29 29 C 1.33829 * 119.73585 * 0.02581 * 28 27 26 30 30 C 1.38410 * 119.74993 * 213.49774 * 21 19 18 31 31 H 1.08997 * 109.47639 * 292.56096 * 1 2 3 32 32 H 1.09003 * 109.46967 * 52.55702 * 1 2 3 33 33 H 1.08994 * 109.47178 * 172.55899 * 1 2 3 34 34 H 1.09001 * 109.49546 * 54.46943 * 4 2 1 35 35 H 1.09002 * 109.49904 * 294.37365 * 4 2 1 36 36 H 0.96990 * 120.00052 * 334.72591 * 7 5 4 37 37 H 0.97004 * 119.99924 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49947 * 181.31324 * 16 5 4 39 39 H 1.09000 * 109.49952 * 301.41187 * 16 5 4 40 40 H 1.09009 * 109.58508 * 185.57811 * 17 16 5 41 41 H 1.08999 * 109.71004 * 65.22314 * 17 16 5 42 42 H 1.08005 * 119.58529 * 359.95732 * 22 21 19 43 43 H 1.08000 * 119.96512 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.64178 * 180.02562 * 26 25 24 45 45 H 1.07997 * 119.66061 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.25622 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2463 5 6 3.5675 -0.8465 1.1712 6 1 3.9377 -1.3423 2.0685 7 7 4.1570 0.4912 1.0743 8 6 5.4413 0.7057 1.4982 9 1 6.0181 -0.1103 1.9079 10 6 6.0019 1.9719 1.4011 11 7 5.2988 2.9663 0.9021 12 14 7.7542 2.2644 1.9785 13 1 8.6813 1.4012 1.2036 14 1 8.1129 3.6901 1.7691 15 1 7.8610 1.9345 3.4225 16 6 3.9569 -1.6657 -0.0613 17 6 3.4651 -0.9485 -1.3224 18 7 2.0225 -0.7010 -1.1936 19 6 1.1673 -1.1097 -2.1517 20 8 -0.0067 -0.8010 -2.0904 21 6 1.6574 -1.9334 -3.2777 22 6 2.6968 -2.8565 -3.0665 23 6 3.1632 -3.6240 -4.0841 24 6 2.6066 -3.5034 -5.3708 25 7 3.0540 -4.2526 -6.3851 26 6 2.5177 -4.1236 -7.5769 27 6 1.4842 -3.2095 -7.7994 28 7 1.0283 -2.4629 -6.8207 29 6 1.5578 -2.5766 -5.5969 30 6 1.0856 -1.7941 -4.5305 31 1 -0.3634 0.3943 0.9490 32 1 -0.3633 0.6248 -0.8160 33 1 -0.3633 -1.0189 -0.1331 34 1 1.6029 -1.7236 1.2935 35 1 1.7660 -0.1640 2.1371 36 1 3.6389 1.2240 0.7064 37 1 5.6906 3.8511 0.8339 38 1 5.0412 -1.7697 -0.1014 39 1 3.4983 -2.6528 -0.0018 40 1 3.6518 -1.5745 -2.1951 41 1 3.9901 0.0001 -1.4342 42 1 3.1299 -2.9558 -2.0821 43 1 3.9619 -4.3288 -3.9060 44 1 2.8801 -4.7296 -8.3941 45 1 1.0558 -3.1171 -8.7865 46 1 0.2841 -1.0874 -4.6873 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044851547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:46 Heat of formation + Delta-G solvation = 81.705421 kcal Electronic energy + Delta-G solvation = -29698.055682 eV Core-core repulsion = 25782.405013 eV Total energy + Delta-G solvation = -3915.650669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.75045 -40.53222 -37.83836 -37.23278 -35.08605 -34.29624 -32.96068 -31.97219 -30.93035 -30.76787 -29.14170 -27.15994 -26.00241 -24.86307 -24.06296 -23.50349 -22.90427 -21.74109 -20.70314 -19.34207 -18.54416 -17.82311 -17.27750 -17.18532 -16.28618 -16.01549 -15.34766 -15.33972 -15.15025 -14.66340 -14.54348 -14.12264 -13.95027 -13.89245 -13.60290 -13.44944 -13.29582 -12.70944 -12.51668 -12.19338 -12.06261 -12.02828 -12.00344 -11.96590 -11.77838 -11.43715 -11.17751 -10.91581 -10.83994 -10.66381 -10.43330 -10.30656 -10.01315 -9.68314 -9.44600 -9.24639 -9.03034 -8.91332 -8.84561 -8.23311 -7.03886 -5.82801 -3.12241 -0.17610 0.13884 1.57733 2.15741 2.96598 3.13943 3.39364 3.44525 3.45554 3.70672 3.73446 3.82138 3.94400 4.34326 4.50275 4.53821 4.61788 4.74152 4.87824 5.06774 5.12663 5.23802 5.30605 5.40790 5.45740 5.55027 5.57271 5.64970 5.68870 5.70954 5.83073 5.83999 5.94278 5.98440 6.08210 6.12126 6.26362 6.27761 6.36012 6.44312 6.54528 6.66732 6.72358 6.78637 6.92294 6.98962 7.38487 7.61914 7.63945 8.26427 8.35429 9.46916 10.03036 10.37723 11.39413 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003032 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.601018 B = 9231.096590 C =10327.144690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.721 5.721 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.087 3.913 18 N -0.586 5.586 19 C 0.554 3.446 20 O -0.532 6.532 21 C -0.103 4.103 22 C -0.079 4.079 23 C -0.091 4.091 24 C 0.091 3.909 25 N -0.427 5.427 26 C 0.080 3.920 27 C 0.071 3.929 28 N -0.417 5.417 29 C 0.071 3.929 30 C -0.023 4.023 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 -14.668 -13.515 21.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.064 3.936 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.035 4.035 18 N -0.318 5.318 19 C 0.342 3.658 20 O -0.411 6.411 21 C -0.108 4.108 22 C -0.099 4.099 23 C -0.110 4.110 24 C -0.033 4.033 25 N -0.141 5.141 26 C -0.096 4.096 27 C -0.105 4.105 28 N -0.131 5.131 29 C -0.053 4.053 30 C -0.044 4.044 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.175 0.825 43 H 0.164 0.836 44 H 0.193 0.807 45 H 0.193 0.807 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.785 -14.390 -13.128 20.977 hybrid contribution 1.107 0.435 -0.003 1.189 sum -6.679 -13.955 -13.131 20.292 Atomic orbital electron populations 1.22192 0.93148 1.03227 1.00787 1.21304 0.94881 0.96188 0.83282 0.89930 1.22258 0.97386 1.00301 0.97294 1.20179 0.90437 0.88138 0.94876 0.92956 1.42505 1.13880 1.04754 1.75251 1.19175 0.89799 0.94279 1.34020 0.91226 1.24729 0.98257 0.95933 1.01789 1.69641 1.36589 1.00807 1.50931 0.86302 0.84724 0.76866 0.78459 1.21298 1.21766 1.21313 1.22557 1.01642 0.97902 0.97187 1.22427 0.79125 1.02869 0.99067 1.48067 1.07704 1.56115 1.19916 1.18120 0.85828 0.79974 0.81895 1.90833 1.16896 1.57068 1.76299 1.20171 0.97472 0.98570 0.94579 1.21497 0.94012 0.93442 1.00966 1.20708 1.00644 0.99879 0.89753 1.19669 0.94843 0.94133 0.94605 1.68726 1.25114 1.20613 0.99638 1.24130 0.93487 0.96584 0.95367 1.24083 0.94686 0.92388 0.99339 1.68673 1.24802 1.20557 0.99101 1.19427 0.95738 0.97379 0.92740 1.21133 0.97520 0.96537 0.89183 0.93706 0.90825 0.91968 0.92008 0.90539 0.78117 0.93407 0.90486 0.93153 0.89213 0.89431 0.82531 0.83592 0.80730 0.80706 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 7.61 37.15 0.28 -1.82 16 2 C 0.15 2.37 3.19 -67.60 -0.22 2.15 16 3 H 0.08 1.54 6.65 -51.93 -0.35 1.19 16 4 C -0.13 -2.09 5.07 -26.61 -0.13 -2.23 16 5 C 0.17 3.10 3.10 -67.89 -0.21 2.89 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.40 4.31 -53.38 -0.23 -16.63 16 8 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 11 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 12 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.15 -2.30 5.43 -26.62 -0.14 -2.44 16 17 C 0.09 1.31 5.26 -3.71 -0.02 1.29 16 18 N -0.59 -9.07 2.97 -166.32 -0.49 -9.56 16 19 C 0.55 8.57 7.18 -12.32 -0.09 8.48 16 20 O -0.53 -9.28 12.34 5.32 0.07 -9.21 16 21 C -0.10 -1.37 5.43 -105.00 -0.57 -1.94 16 22 C -0.08 -0.90 7.28 -39.59 -0.29 -1.19 16 23 C -0.09 -0.98 9.95 -39.55 -0.39 -1.37 16 24 C 0.09 1.11 6.59 -84.73 -0.56 0.55 16 25 N -0.43 -4.68 10.46 -10.74 -0.11 -4.79 16 26 C 0.08 0.62 11.21 -17.20 -0.19 0.42 16 27 C 0.07 0.56 11.21 -17.22 -0.19 0.37 16 28 N -0.42 -4.88 10.46 -10.81 -0.11 -4.99 16 29 C 0.07 0.90 6.58 -84.81 -0.56 0.35 16 30 C -0.02 -0.31 9.56 -38.69 -0.37 -0.68 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.23 6.68 -51.93 -0.35 0.88 16 33 H 0.06 0.98 6.81 -51.93 -0.35 0.63 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.38 9.41 6.06 -40.82 -0.25 9.16 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.64 7.58 -51.93 -0.39 0.25 16 40 H 0.09 1.15 3.53 -51.93 -0.18 0.97 16 41 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 42 H 0.16 1.62 4.94 -52.48 -0.26 1.36 16 43 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.15 1.99 7.95 -52.49 -0.42 1.57 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -31.65 363.48 -9.48 -41.13 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -5.87 Total: 10.21 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.90 Total: -1.93 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.23 Total: -62.23 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.65 -9.48 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044851547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.837 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds