Wall clock time and date at job start Wed Apr 1 2020 00:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 110.64064 * 2 1 4 4 C 1.54327 * 110.87344 * 236.75591 * 2 1 3 5 5 N 1.47016 * 107.26939 * 219.37199 * 4 2 1 6 6 C 1.34781 * 125.64872 * 178.98149 * 5 4 2 7 7 O 1.21635 * 119.99769 * 359.51708 * 6 5 4 8 8 C 1.47076 * 120.00301 * 179.51785 * 6 5 4 9 9 C 1.38073 * 126.49250 * 351.23289 * 8 6 5 10 10 C 1.39251 * 107.69485 * 179.84433 * 9 8 6 11 11 N 1.31020 * 108.82562 * 0.42739 * 10 9 8 12 12 N 1.36946 * 126.49434 * 171.54431 * 8 6 5 13 13 C 1.40012 * 126.17020 * 0.03472 * 12 8 6 14 14 C 1.38875 * 120.07120 * 314.55115 * 13 12 8 15 15 C 1.38114 * 119.92960 * 179.71700 * 14 13 12 16 16 C 1.38283 * 120.07028 * 0.55791 * 15 14 13 17 17 C 1.38288 * 120.14006 * 359.71462 * 16 15 14 18 18 C 1.38105 * 120.07308 * 0.02562 * 17 16 15 19 19 C 1.47425 * 108.70405 * 358.93847 * 5 4 2 20 20 C 1.54900 * 104.83457 * 24.12866 * 19 5 4 21 21 H 1.09010 * 111.00714 * 81.06592 * 20 19 5 22 22 N 1.46498 * 111.00786 * 204.91895 * 20 19 5 23 23 C 1.36936 * 119.99789 * 263.18225 * 22 20 19 24 24 H 1.08003 * 120.00092 * 4.95666 * 23 22 20 25 25 C 1.38819 * 120.00339 * 184.95779 * 23 22 20 26 26 N 1.31613 * 120.00492 * 179.97438 * 25 23 22 27 27 Si 1.86807 * 119.99401 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47106 * 89.99897 * 27 25 23 29 29 H 1.48496 * 109.46724 * 210.00126 * 27 25 23 30 30 H 1.48501 * 109.47065 * 329.99756 * 27 25 23 31 31 H 1.09004 * 109.46711 * 296.85876 * 1 2 3 32 32 H 1.09008 * 109.46874 * 56.85547 * 1 2 3 33 33 H 1.08996 * 109.46885 * 176.85897 * 1 2 3 34 34 H 1.09001 * 109.88035 * 338.78515 * 4 2 1 35 35 H 1.08995 * 109.88083 * 99.95355 * 4 2 1 36 36 H 1.08004 * 126.15354 * 0.02562 * 9 8 6 37 37 H 1.08002 * 125.59055 * 180.14135 * 10 9 8 38 38 H 1.08003 * 120.03596 * 359.97438 * 14 13 12 39 39 H 1.08000 * 119.96270 * 180.29328 * 15 14 13 40 40 H 1.07990 * 119.93178 * 179.69795 * 16 15 14 41 41 H 1.08006 * 119.96543 * 180.02562 * 17 16 15 42 42 H 1.07998 * 120.04010 * 180.02562 * 18 17 16 43 43 H 1.08999 * 110.36618 * 265.28569 * 19 5 4 44 44 H 1.09007 * 110.36932 * 142.96848 * 19 5 4 45 45 H 0.97001 * 120.00366 * 83.17781 * 22 20 19 46 46 H 0.96995 * 119.99987 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2494 -1.5469 -0.7354 6 6 4.0005 -2.3783 -1.4845 7 8 3.7240 -2.5593 -2.6551 8 6 5.1546 -3.0667 -0.8866 9 6 5.6897 -2.8366 0.3652 10 6 6.7660 -3.7044 0.5314 11 7 6.8997 -4.4250 -0.5546 12 7 5.9055 -4.0531 -1.4683 13 6 5.7145 -4.5921 -2.7463 14 6 4.4386 -4.9376 -3.1723 15 6 4.2527 -5.4636 -4.4357 16 6 5.3368 -5.6572 -5.2720 17 6 6.6093 -5.3195 -4.8488 18 6 6.8012 -4.7881 -3.5886 19 6 3.4652 -1.2446 0.6913 20 6 2.0790 -0.7934 1.2151 21 1 1.4469 -1.6529 1.4383 22 7 2.2175 0.0727 2.3885 23 6 2.1001 -0.4549 3.6466 24 1 1.9854 -1.5210 3.7765 25 6 2.1284 0.3803 4.7551 26 7 2.0150 -0.1268 5.9643 27 14 2.3260 2.2242 4.5302 28 1 0.9872 2.8533 4.4003 29 1 3.0285 2.7939 5.7080 30 1 3.1195 2.4910 3.3037 31 1 -0.3633 0.4643 0.9169 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 1.3191 -1.4773 -1.5771 35 1 2.3775 -0.1014 -1.9963 36 1 5.3354 -2.1155 1.0869 37 1 7.3912 -3.7694 1.4097 38 1 3.5920 -4.7911 -2.5177 39 1 3.2601 -5.7280 -4.7692 40 1 5.1895 -6.0732 -6.2576 41 1 7.4540 -5.4716 -5.5044 42 1 7.7952 -4.5242 -3.2588 43 1 4.1930 -0.4409 0.8029 44 1 3.7993 -2.1363 1.2217 45 1 2.3925 1.0200 2.2742 46 1 2.0344 0.4568 6.7387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054802506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:57 Heat of formation + Delta-G solvation = 111.333699 kcal Electronic energy + Delta-G solvation = -29385.794987 eV Core-core repulsion = 25471.429096 eV Total energy + Delta-G solvation = -3914.365891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.71595 -39.73508 -39.03730 -37.70727 -34.41783 -33.56380 -32.81629 -31.33746 -31.15606 -30.39850 -29.11684 -28.13209 -26.50121 -24.38269 -23.56025 -23.06341 -22.43080 -21.15373 -20.89363 -20.20320 -19.67709 -17.81375 -17.63157 -16.64004 -16.37873 -16.30173 -15.72974 -15.36841 -14.86102 -14.78981 -14.39019 -14.19823 -14.01916 -13.79281 -13.66251 -13.37965 -13.32063 -13.03791 -12.82445 -12.73024 -12.63897 -12.10750 -11.92574 -11.77286 -11.51249 -11.36403 -11.25445 -11.03897 -10.76201 -10.66378 -10.45372 -10.25544 -10.11371 -9.99733 -9.72588 -9.21176 -9.11290 -9.07443 -8.58985 -8.38202 -7.46957 -5.91412 -3.30554 0.59470 1.20090 1.41853 2.02833 2.45838 3.01859 3.16237 3.26946 3.30464 3.37267 3.54542 4.25241 4.45698 4.50967 4.71955 4.75874 4.76947 4.89975 4.91260 4.98826 5.10543 5.17905 5.28582 5.34507 5.43663 5.44859 5.47117 5.55506 5.61744 5.66244 5.74017 5.75743 5.78942 5.96745 6.03366 6.12322 6.15348 6.17238 6.23241 6.27559 6.29435 6.43539 6.44682 6.52317 6.63152 6.97936 7.37727 7.46757 7.82725 8.02592 8.26867 9.03149 9.74990 9.92680 11.25889 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017271 B = 0.002956 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.789770 B = 9470.019314 C =10599.244149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.120 3.880 5 N -0.593 5.593 6 C 0.590 3.410 7 O -0.537 6.537 8 C 0.039 3.961 9 C -0.219 4.219 10 C 0.046 3.954 11 N -0.269 5.269 12 N -0.298 5.298 13 C 0.144 3.856 14 C -0.072 4.072 15 C -0.108 4.108 16 C -0.115 4.115 17 C -0.116 4.116 18 C -0.104 4.104 19 C 0.055 3.945 20 C 0.183 3.817 21 H 0.082 0.918 22 N -0.732 5.732 23 C -0.256 4.256 24 H 0.093 0.907 25 C 0.013 3.987 26 N -0.927 5.927 27 Si 0.884 3.116 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.179 0.821 37 H 0.196 0.804 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.365 0.635 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -6.768 -19.097 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 H 0.101 0.899 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.377 3.623 7 O -0.415 6.415 8 C -0.089 4.089 9 C -0.248 4.248 10 C -0.138 4.138 11 N -0.091 5.091 12 N -0.077 5.077 13 C 0.054 3.946 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.133 4.133 17 C -0.134 4.134 18 C -0.124 4.124 19 C -0.070 4.070 20 C 0.070 3.930 21 H 0.100 0.900 22 N -0.373 5.373 23 C -0.385 4.385 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.573 5.573 27 Si 0.714 3.286 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.196 0.804 37 H 0.213 0.787 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.198 0.802 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.948 -7.974 -20.143 22.466 hybrid contribution -0.077 2.100 0.605 2.187 sum 5.871 -5.875 -19.538 21.230 Atomic orbital electron populations 1.21670 0.93530 1.01940 1.02132 1.22628 0.96886 0.99738 0.94785 0.89899 1.22042 0.86796 0.94402 0.97008 1.48130 1.29098 1.42951 1.12406 1.16588 0.81187 0.79332 0.85180 1.90845 1.71030 1.64186 1.15460 1.21082 0.97429 0.95428 0.94911 1.22813 0.99643 1.05708 0.96648 1.23977 0.98115 0.94460 0.97206 1.77495 1.08818 1.22641 1.00114 1.45962 1.22844 1.27372 1.11534 1.17358 0.94785 1.00736 0.81719 1.21011 0.95200 0.95713 0.97356 1.20965 0.99332 0.99291 0.93072 1.21233 0.92614 0.99669 0.99810 1.20971 0.97582 0.99543 0.95316 1.20990 0.98069 0.99962 0.93369 1.23995 1.02648 1.01720 0.78681 1.21352 0.91856 0.93889 0.85886 0.90018 1.42655 1.86186 1.06606 1.01821 1.19058 1.43821 0.94462 0.81192 0.88946 1.24695 1.01207 0.97419 0.95104 1.69690 1.55919 1.34443 0.97217 0.86584 0.77970 0.87058 0.77022 1.20938 1.21651 1.20304 0.91229 0.93091 0.92552 0.91022 0.91518 0.80354 0.78702 0.85549 0.85234 0.85577 0.85296 0.85358 0.90683 0.89127 0.80168 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.17 37.16 0.34 -1.34 16 2 C -0.12 -1.62 3.20 -88.78 -0.28 -1.91 16 3 H 0.08 1.11 8.02 -51.92 -0.42 0.69 16 4 C 0.12 1.57 6.47 -3.07 -0.02 1.55 16 5 N -0.59 -8.61 3.33 -171.92 -0.57 -9.18 16 6 C 0.59 9.33 7.40 -12.67 -0.09 9.23 16 7 O -0.54 -9.28 13.60 5.25 0.07 -9.20 16 8 C 0.04 0.59 6.72 -82.06 -0.55 0.04 16 9 C -0.22 -2.99 9.11 -39.27 -0.36 -3.35 16 10 C 0.05 0.59 11.96 -17.52 -0.21 0.38 16 11 N -0.27 -3.97 12.42 30.53 0.38 -3.59 16 12 N -0.30 -4.59 3.73 -7.08 -0.03 -4.61 16 13 C 0.14 2.09 5.86 -83.65 -0.49 1.60 16 14 C -0.07 -0.99 7.41 -39.39 -0.29 -1.28 16 15 C -0.11 -1.18 10.04 -39.61 -0.40 -1.57 16 16 C -0.11 -1.08 10.04 -39.55 -0.40 -1.48 16 17 C -0.12 -1.14 10.04 -39.61 -0.40 -1.54 16 18 C -0.10 -1.28 9.88 -39.39 -0.39 -1.67 16 19 C 0.05 0.82 4.90 -2.53 -0.01 0.80 16 20 C 0.18 3.00 3.18 -65.79 -0.21 2.79 16 21 H 0.08 1.42 7.97 -51.92 -0.41 1.01 16 22 N -0.73 -14.97 5.01 -51.35 -0.26 -15.23 16 23 C -0.26 -6.46 10.43 -15.06 -0.16 -6.62 16 24 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 25 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 26 N -0.93 -27.27 13.97 55.49 0.78 -26.49 16 27 Si 0.88 20.42 27.79 -169.99 -4.72 15.70 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.28 -5.93 6.45 56.52 0.36 -5.56 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.07 0.91 7.78 -51.93 -0.40 0.50 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.18 2.30 4.79 -52.48 -0.25 2.05 16 37 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.13 1.83 6.87 -52.48 -0.36 1.47 16 39 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 42 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 44 H 0.09 1.35 5.51 -51.93 -0.29 1.07 16 45 H 0.36 7.40 5.65 -40.82 -0.23 7.17 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -31.31 375.50 -8.88 -40.19 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.17 Total: 10.88 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.01 Total: -4.11 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.11 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.72 Total: 15.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.31 -8.88 -40.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054802506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.521 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds