Wall clock time and date at job start Tue Mar 31 2020 23:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58673 * 2 1 4 4 C 1.53191 * 109.58229 * 120.28336 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56566 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09000 * 109.49826 * 301.40916 * 6 5 4 8 8 N 1.46498 * 109.49601 * 181.31313 * 6 5 4 9 9 C 1.34779 * 120.00097 * 155.00026 * 8 6 5 10 10 O 1.21495 * 119.99416 * 0.02562 * 9 8 6 11 11 C 1.48350 * 120.00041 * 180.02562 * 9 8 6 12 12 C 1.40180 * 119.20100 * 179.97438 * 11 9 8 13 13 C 1.36618 * 119.70477 * 179.97438 * 12 11 9 14 14 C 1.40593 * 118.20980 * 0.02562 * 13 12 11 15 15 C 1.40740 * 121.37836 * 179.97438 * 14 13 12 16 16 C 1.36589 * 118.12941 * 180.02562 * 15 14 13 17 17 C 1.39419 * 119.85182 * 359.97438 * 16 15 14 18 18 N 1.31019 * 121.83954 * 0.02562 * 17 16 15 19 19 C 1.33857 * 121.42134 * 359.97438 * 18 17 16 20 20 N 1.31873 * 119.20409 * 359.73023 * 11 9 8 21 21 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 22 22 N 1.46921 * 109.70627 * 239.64259 * 2 1 3 23 23 C 1.36944 * 120.63036 * 6.51200 * 22 2 1 24 24 H 1.07995 * 119.99899 * 330.20373 * 23 22 2 25 25 C 1.38810 * 119.99902 * 150.20045 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.48280 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.47877 * 25 23 22 28 28 H 1.48509 * 109.47049 * 90.00392 * 27 25 23 29 29 H 1.48497 * 109.47148 * 209.99933 * 27 25 23 30 30 H 1.48495 * 109.47222 * 330.00437 * 27 25 23 31 31 H 1.09000 * 109.47456 * 300.00245 * 1 2 3 32 32 H 1.09001 * 109.46694 * 60.00114 * 1 2 3 33 33 H 1.09003 * 109.47396 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.49925 * 294.51526 * 4 2 1 35 35 H 1.09002 * 109.49898 * 54.61022 * 4 2 1 36 36 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 37 37 H 1.08993 * 109.46150 * 178.61238 * 5 4 2 38 38 H 0.96998 * 120.00367 * 334.99799 * 8 6 5 39 39 H 1.07995 * 120.14654 * 359.97438 * 12 11 9 40 40 H 1.08001 * 120.89300 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.93453 * 359.97438 * 15 14 13 42 42 H 1.08002 * 120.06945 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.08293 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.58698 * 65.15033 * 21 6 5 45 45 H 1.08994 * 109.58664 * 185.43222 * 21 6 5 46 46 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7278 1.2464 5 6 3.5677 -0.8434 1.1731 6 6 3.9603 -1.6609 -0.0597 7 1 3.5036 -2.6489 -0.0016 8 7 5.4179 -1.7976 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2669 -3.6652 -1.3031 11 6 7.4504 -2.9783 -0.8133 12 6 8.0112 -4.0688 -1.4924 13 6 9.3693 -4.2064 -1.5475 14 6 10.1620 -3.2350 -0.9113 15 6 11.5672 -3.3116 -0.9258 16 6 12.2721 -2.3322 -0.2860 17 6 11.5949 -1.2961 0.3557 18 7 10.2865 -1.2283 0.3671 19 6 9.5345 -2.1544 -0.2400 20 7 8.2033 -2.0701 -0.2239 21 6 3.4685 -0.9436 -1.3209 22 7 2.0254 -0.6990 -1.1935 23 6 1.1585 -1.1152 -2.1685 24 1 0.1448 -1.3840 -1.9108 25 6 1.5827 -1.1915 -3.4880 26 7 2.6926 -0.5886 -3.8583 27 14 0.5786 -2.1499 -4.7379 28 1 -0.4165 -1.2471 -5.3706 29 1 1.4812 -2.7000 -5.7810 30 1 -0.1273 -3.2643 -4.0561 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7637 -0.1655 2.1372 35 1 1.6047 -1.7246 1.2922 36 1 4.0045 0.1528 1.1023 37 1 3.9379 -1.3391 2.0704 38 1 5.9827 -1.1382 0.3206 39 1 7.3724 -4.7970 -1.9700 40 1 9.8218 -5.0393 -2.0651 41 1 12.0739 -4.1224 -1.4281 42 1 13.3518 -2.3599 -0.2779 43 1 12.1647 -0.5285 0.8582 44 1 3.9920 0.0063 -1.4286 45 1 3.6599 -1.5673 -2.1941 46 1 2.9889 -0.6416 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071518055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:39 Heat of formation + Delta-G solvation = 59.963626 kcal Electronic energy + Delta-G solvation = -29137.584701 eV Core-core repulsion = 25220.991237 eV Total energy + Delta-G solvation = -3916.593464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.47021 -39.60353 -38.02636 -37.22914 -34.61246 -34.21429 -32.76979 -31.60423 -31.18504 -30.37176 -29.77253 -26.47548 -25.52205 -24.85822 -24.30469 -22.87602 -22.23855 -21.28778 -20.14899 -19.40732 -18.89383 -18.03195 -17.43120 -16.39255 -16.25550 -15.64888 -15.43990 -15.16317 -14.85698 -14.46252 -14.26282 -14.19326 -13.79289 -13.73202 -13.45952 -13.34928 -13.30748 -12.74167 -12.35189 -12.29231 -12.17188 -11.80490 -11.42029 -11.37438 -11.07336 -10.91632 -10.86079 -10.65934 -10.47269 -10.35844 -10.21386 -9.98336 -9.87992 -9.55875 -9.40623 -9.22227 -9.21586 -9.17210 -8.50034 -8.37357 -6.55133 -5.69379 -3.13908 -0.18595 0.24557 1.59489 2.23941 3.16839 3.27869 3.44428 3.51830 3.54100 3.55369 3.96463 4.09405 4.29975 4.36111 4.44829 4.56741 4.66474 4.79861 5.00350 5.07028 5.36011 5.40737 5.42851 5.49593 5.56773 5.58525 5.63434 5.75487 5.85059 5.89505 6.01994 6.18511 6.28515 6.33160 6.36023 6.44707 6.49993 6.54850 6.68957 6.79455 6.93645 7.05099 7.10251 7.18325 7.36675 7.77246 7.78386 7.90443 7.97940 8.51874 8.56397 9.29213 9.93694 10.49700 11.38770 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.002912 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.820158 B = 9612.192133 C =10770.014263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.693 5.693 9 C 0.561 3.439 10 O -0.519 6.519 11 C 0.158 3.842 12 C -0.127 4.127 13 C -0.049 4.049 14 C -0.146 4.146 15 C -0.045 4.045 16 C -0.178 4.178 17 C 0.156 3.844 18 N -0.458 5.458 19 C 0.302 3.698 20 N -0.437 5.437 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.279 1.279 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.405 0.595 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.168 0.832 44 H 0.019 0.981 45 H 0.093 0.907 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.135 -4.882 9.254 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.155 4.155 6 C 0.009 3.991 7 H 0.103 0.897 8 N -0.343 5.343 9 C 0.343 3.657 10 O -0.394 6.394 11 C 0.000 4.000 12 C -0.148 4.148 13 C -0.076 4.076 14 C -0.151 4.151 15 C -0.072 4.072 16 C -0.197 4.197 17 C -0.021 4.021 18 N -0.167 5.167 19 C 0.063 3.937 20 N -0.150 5.150 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.087 0.913 25 C -0.193 4.193 26 N -0.543 5.543 27 Si 0.730 3.270 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.204 1.204 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.241 0.759 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.185 0.815 44 H 0.037 0.963 45 H 0.111 0.889 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.744 -4.043 9.557 20.555 hybrid contribution 0.897 -1.446 -1.412 2.211 sum 18.641 -5.489 8.145 21.070 Atomic orbital electron populations 1.21796 0.95990 1.01383 1.00180 1.20496 0.93046 0.93624 0.87055 0.95702 1.22044 0.94223 1.01318 0.98930 1.21681 0.97370 0.99834 0.96610 1.22111 0.77197 1.01131 0.98656 0.89747 1.45980 1.08882 1.25866 1.53546 1.17778 0.85176 0.82678 0.80032 1.90838 1.61294 1.42305 1.44917 1.21729 0.94901 0.90504 0.92842 1.21924 0.95739 0.98639 0.98461 1.21456 0.93202 0.97290 0.95671 1.19730 0.95673 0.98128 1.01551 1.21495 0.91932 0.98177 0.95568 1.22033 1.02001 0.95969 0.99745 1.23131 0.89393 0.96124 0.93473 1.67640 1.06714 1.25200 1.17122 1.19230 0.89970 0.90173 0.94302 1.67420 1.04583 1.25974 1.16988 1.21061 0.83637 0.97026 0.94084 1.44006 1.02526 1.64737 1.19325 1.19117 0.95106 1.37975 0.85973 0.91261 1.25093 0.97802 0.99345 0.97061 1.70014 1.24071 1.43599 1.16664 0.86338 0.79306 0.80055 0.81317 1.21521 1.21625 1.20413 0.94340 0.92023 0.92798 0.92623 0.92056 0.92074 0.92948 0.75936 0.82394 0.83294 0.83881 0.83879 0.81518 0.96309 0.88889 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.96 37.16 0.30 -2.30 16 2 C 0.16 3.44 3.49 -67.60 -0.24 3.21 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 5 C -0.12 -2.00 5.35 -26.69 -0.14 -2.14 16 6 C 0.11 2.31 2.60 -67.81 -0.18 2.14 16 7 H 0.08 1.89 7.58 -51.93 -0.39 1.49 16 8 N -0.69 -12.68 5.07 -54.47 -0.28 -12.95 16 9 C 0.56 10.60 7.78 -12.10 -0.09 10.50 16 10 O -0.52 -11.41 15.94 5.37 0.09 -11.33 16 11 C 0.16 2.51 6.75 -82.96 -0.56 1.95 16 12 C -0.13 -1.64 9.54 -39.44 -0.38 -2.01 16 13 C -0.05 -0.49 9.89 -39.28 -0.39 -0.88 16 14 C -0.15 -1.59 5.75 -106.68 -0.61 -2.21 16 15 C -0.04 -0.33 9.90 -39.23 -0.39 -0.72 16 16 C -0.18 -1.11 10.04 -39.74 -0.40 -1.51 16 17 C 0.16 1.31 11.14 -17.46 -0.19 1.11 16 18 N -0.46 -5.99 10.43 -12.59 -0.13 -6.12 16 19 C 0.30 4.27 7.62 -157.90 -1.20 3.07 16 20 N -0.44 -6.97 9.56 -9.19 -0.09 -7.06 16 21 C 0.17 4.20 4.86 -3.71 -0.02 4.19 16 22 N -0.58 -14.76 2.99 -164.78 -0.49 -15.26 16 23 C -0.25 -6.98 8.58 -15.06 -0.13 -7.10 16 24 H 0.07 1.86 6.24 -52.49 -0.33 1.53 16 25 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 26 N -0.90 -27.02 11.23 55.49 0.62 -26.40 16 27 Si 0.90 22.53 29.58 -169.99 -5.03 17.50 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 30 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.05 1.04 7.42 -51.93 -0.39 0.66 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.41 6.72 7.91 -40.82 -0.32 6.39 16 39 H 0.16 1.92 7.60 -52.49 -0.40 1.52 16 40 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 2.70 6.15 -51.93 -0.32 2.38 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -34.95 375.76 -10.83 -45.78 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.33 Total: 5.13 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -4.85 Total: 5.04 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -0.36 Total: -67.78 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.95 -10.83 -45.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071518055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.739 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds