Wall clock time and date at job start Tue Mar 31 2020 23:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.59022 * 2 1 4 4 C 1.53196 * 109.58921 * 120.42754 * 2 1 3 5 5 C 1.53036 * 109.31466 * 174.42090 * 4 2 1 6 6 C 1.53043 * 109.53839 * 298.63117 * 5 4 2 7 7 H 1.08996 * 109.49826 * 301.41738 * 6 5 4 8 8 N 1.46496 * 109.52385 * 181.33190 * 6 5 4 9 9 C 1.34777 * 119.99627 * 155.14531 * 8 6 5 10 10 O 1.21543 * 120.00242 * 0.02562 * 9 8 6 11 11 C 1.47901 * 119.99619 * 180.02562 * 9 8 6 12 12 N 1.32128 * 120.03558 * 359.72998 * 11 9 8 13 13 C 1.31979 * 122.76971 * 179.69789 * 12 11 9 14 14 C 1.37783 * 121.72596 * 0.58181 * 13 12 11 15 15 C 1.40377 * 118.72743 * 359.72438 * 14 13 12 16 16 C 1.40649 * 122.28205 * 179.97438 * 15 14 13 17 17 C 1.36640 * 117.95590 * 180.02562 * 16 15 14 18 18 C 1.39395 * 119.92381 * 0.02562 * 17 16 15 19 19 N 1.31212 * 121.85419 * 359.97438 * 18 17 16 20 20 C 1.33255 * 121.21923 * 0.02562 * 19 18 17 21 21 C 1.53192 * 109.30834 * 61.36649 * 6 5 4 22 22 N 1.46927 * 108.77872 * 305.36149 * 21 6 5 23 23 C 1.36928 * 120.63300 * 233.58728 * 22 21 6 24 24 H 1.08004 * 120.00160 * 150.86664 * 23 22 21 25 25 C 1.38809 * 120.00407 * 330.86657 * 23 22 21 26 26 N 1.31620 * 119.99787 * 343.81676 * 25 23 22 27 27 Si 1.86793 * 120.00361 * 163.81680 * 25 23 22 28 28 H 1.48504 * 109.47031 * 94.31122 * 27 25 23 29 29 H 1.48496 * 109.47382 * 214.30849 * 27 25 23 30 30 H 1.48497 * 109.47172 * 334.31467 * 27 25 23 31 31 H 1.08992 * 109.47000 * 180.28836 * 1 2 3 32 32 H 1.09005 * 109.46405 * 300.28702 * 1 2 3 33 33 H 1.08996 * 109.47169 * 60.28312 * 1 2 3 34 34 H 1.09006 * 109.49395 * 294.37242 * 4 2 1 35 35 H 1.09004 * 109.49358 * 54.46504 * 4 2 1 36 36 H 1.09001 * 109.45882 * 178.61418 * 5 4 2 37 37 H 1.08997 * 109.46530 * 58.65247 * 5 4 2 38 38 H 0.96996 * 120.00218 * 335.15445 * 8 6 5 39 39 H 1.07999 * 119.13719 * 180.30388 * 13 12 11 40 40 H 1.07996 * 120.63284 * 179.73813 * 14 13 12 41 41 H 1.08002 * 121.01837 * 0.04419 * 16 15 14 42 42 H 1.07997 * 120.03694 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.07291 * 179.97438 * 18 17 16 44 44 H 1.08998 * 109.58505 * 185.57517 * 21 6 5 45 45 H 1.09005 * 109.58822 * 65.15615 * 21 6 5 46 46 H 0.96998 * 120.00378 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1691 6 6 3.9569 -1.6658 -0.0656 7 1 3.4983 -2.6529 -0.0085 8 7 5.4141 -1.8060 -0.1201 9 6 5.9669 -2.8467 -0.7743 10 8 5.2564 -3.6686 -1.3193 11 6 7.4380 -2.9885 -0.8289 12 7 8.2111 -2.0926 -0.2412 13 6 9.5287 -2.1694 -0.2513 14 6 10.1898 -3.1941 -0.8925 15 6 9.4339 -4.1810 -1.5447 16 6 10.0311 -5.2591 -2.2224 17 6 9.2106 -6.1689 -2.8273 18 6 7.8273 -6.0102 -2.7605 19 7 7.2757 -5.0023 -2.1268 20 6 8.0191 -4.0804 -1.5160 21 6 3.4650 -0.9454 -1.3249 22 7 2.0225 -0.6982 -1.1954 23 6 1.1537 -1.1100 -2.1703 24 1 0.1365 -1.3667 -1.9139 25 6 1.5803 -1.1977 -3.4883 26 7 2.6906 -0.5977 -3.8619 27 14 0.5788 -2.1672 -4.7317 28 1 -0.3434 -1.2496 -5.4480 29 1 1.4926 -2.8123 -5.7085 30 1 -0.2092 -3.2103 -4.0274 31 1 -0.3633 -1.0276 0.0052 32 1 -0.3632 0.5183 0.8875 33 1 -0.3633 0.5094 -0.8925 34 1 1.7661 -0.1694 2.1366 35 1 1.6029 -1.7269 1.2892 36 1 3.9378 -1.3474 2.0652 37 1 4.0062 0.1459 1.0994 38 1 5.9811 -1.1500 0.3146 39 1 10.1037 -1.4066 0.2525 40 1 11.2689 -3.2374 -0.8931 41 1 11.1052 -5.3646 -2.2631 42 1 9.6333 -7.0100 -3.3566 43 1 7.1917 -6.7373 -3.2439 44 1 3.6518 -1.5691 -2.1991 45 1 3.9904 0.0037 -1.4317 46 1 2.9890 -0.6592 -4.7828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071576428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:12 Heat of formation + Delta-G solvation = 36.227240 kcal Electronic energy + Delta-G solvation = -29601.116104 eV Core-core repulsion = 25683.493352 eV Total energy + Delta-G solvation = -3917.622751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34806 -40.70206 -39.27743 -38.87422 -35.98630 -34.76660 -34.64857 -32.66758 -32.29662 -31.79376 -31.19664 -27.85885 -27.03329 -26.17498 -25.10877 -24.51117 -23.91797 -22.29781 -21.56708 -20.98983 -19.76041 -18.75789 -18.56882 -18.31392 -17.40306 -17.15482 -16.71653 -16.37320 -15.83627 -15.70271 -15.54695 -15.30770 -15.27317 -15.13213 -14.91733 -14.51192 -14.23217 -14.12606 -14.01869 -13.72988 -13.48970 -13.13635 -13.08461 -12.78440 -12.70229 -12.54551 -12.29906 -12.14081 -12.00975 -11.83203 -11.67929 -11.46344 -11.23744 -11.12512 -10.96633 -10.54261 -10.39265 -10.17672 -10.06533 -9.47455 -8.63851 -7.86054 -5.31888 -1.11841 -0.34382 0.64735 1.38108 1.43358 1.51240 1.66502 2.03207 2.20280 2.49667 3.02878 3.06181 3.21732 3.30876 3.42073 3.63164 3.69336 3.74775 3.91981 3.94714 4.08275 4.21572 4.24303 4.32234 4.38536 4.46667 4.56708 4.60288 4.64415 4.70663 4.80849 4.88965 4.93417 5.00384 5.05760 5.08045 5.17585 5.28906 5.30797 5.35492 5.47967 5.55037 5.60875 5.61431 5.69404 5.78490 6.39042 6.47565 6.69156 6.96203 7.14006 7.30236 7.89011 8.39119 9.19407 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003547 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.883141 B = 7891.269795 C = 9454.770211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.132 3.868 7 H 0.051 0.949 8 N -0.695 5.695 9 C 0.551 3.449 10 O -0.541 6.541 11 C 0.098 3.902 12 N -0.449 5.449 13 C 0.056 3.944 14 C -0.087 4.087 15 C -0.105 4.105 16 C -0.047 4.047 17 C -0.153 4.153 18 C 0.124 3.876 19 N -0.492 5.492 20 C 0.080 3.920 21 C 0.184 3.816 22 N -0.603 5.603 23 C -0.251 4.251 24 H 0.077 0.923 25 C -0.055 4.055 26 N -0.935 5.935 27 Si 0.957 3.043 28 H -0.277 1.277 29 H -0.302 1.302 30 H -0.269 1.269 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.207 0.793 40 H 0.202 0.798 41 H 0.198 0.802 42 H 0.187 0.813 43 H 0.175 0.825 44 H 0.039 0.961 45 H -0.006 1.006 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.944 -6.914 10.229 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.070 0.930 8 N -0.347 5.347 9 C 0.336 3.664 10 O -0.416 6.416 11 C -0.053 4.053 12 N -0.162 5.162 13 C -0.092 4.092 14 C -0.107 4.107 15 C -0.113 4.113 16 C -0.073 4.073 17 C -0.174 4.174 18 C -0.050 4.050 19 N -0.201 5.201 20 C -0.044 4.044 21 C 0.057 3.943 22 N -0.327 5.327 23 C -0.381 4.381 24 H 0.095 0.905 25 C -0.250 4.250 26 N -0.582 5.582 27 Si 0.786 3.214 28 H -0.204 1.204 29 H -0.229 1.229 30 H -0.193 1.193 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.250 0.750 39 H 0.224 0.776 40 H 0.219 0.781 41 H 0.215 0.785 42 H 0.205 0.795 43 H 0.192 0.808 44 H 0.057 0.943 45 H 0.012 0.988 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.186 -6.552 10.262 22.723 hybrid contribution 0.665 -0.811 -1.679 1.980 sum 19.852 -7.363 8.583 22.847 Atomic orbital electron populations 1.21729 0.94512 1.01200 1.01146 1.20831 0.94467 0.93356 0.86622 0.96042 1.21952 0.94168 1.00969 0.98463 1.21644 0.97359 0.99855 0.95604 1.21570 0.78707 0.99185 0.97945 0.93028 1.45779 1.07726 1.26735 1.54455 1.18202 0.86989 0.82019 0.79214 1.90842 1.62494 1.43295 1.44987 1.21163 0.93368 0.92554 0.98219 1.67245 1.09013 1.24728 1.15234 1.23362 0.88288 0.99289 0.98268 1.22995 1.03465 0.91472 0.92799 1.19400 0.92261 0.99102 1.00519 1.22020 1.02995 0.90213 0.92051 1.22513 0.93292 1.01695 0.99871 1.23869 0.95338 0.93498 0.92272 1.68252 1.40665 1.03010 1.08190 1.19702 0.91716 0.95134 0.97810 1.20693 0.83890 0.94964 0.94769 1.44332 1.02368 1.65766 1.20220 1.19502 0.95266 1.36672 0.86651 0.90532 1.25827 0.99102 1.01027 0.99058 1.70191 1.26032 1.45707 1.16265 0.85397 0.77889 0.79014 0.79106 1.20358 1.22922 1.19323 0.93504 0.90110 0.94261 0.88309 0.92829 0.89807 0.90951 0.74969 0.77634 0.78129 0.78545 0.79531 0.80761 0.94264 0.98784 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 7.94 71.98 0.57 -4.27 16 2 C 0.15 6.44 3.50 44.97 0.16 6.59 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -3.92 5.37 30.67 0.16 -3.76 16 5 C -0.11 -3.59 5.36 30.62 0.16 -3.42 16 6 C 0.13 5.83 2.60 45.07 0.12 5.95 16 7 H 0.05 2.60 7.58 -2.39 -0.02 2.58 16 8 N -0.69 -28.00 5.07 -444.99 -2.26 -30.26 16 9 C 0.55 24.74 7.77 86.80 0.67 25.41 16 10 O -0.54 -29.29 14.87 -3.85 -0.06 -29.35 16 11 C 0.10 3.58 6.81 42.46 0.29 3.87 16 12 N -0.45 -12.87 9.48 -184.12 -1.75 -14.62 16 13 C 0.06 1.00 11.12 84.56 0.94 1.94 16 14 C -0.09 -1.21 9.93 22.68 0.23 -0.99 16 15 C -0.11 -2.24 5.75 -21.27 -0.12 -2.36 16 16 C -0.05 -0.61 9.94 22.48 0.22 -0.39 16 17 C -0.15 -2.21 10.03 22.17 0.22 -1.99 16 18 C 0.12 3.08 11.14 85.06 0.95 4.03 16 19 N -0.49 -18.19 8.49 -187.92 -1.60 -19.79 16 20 C 0.08 2.71 6.61 40.63 0.27 2.98 16 21 C 0.18 10.09 4.87 86.36 0.42 10.51 16 22 N -0.60 -32.53 2.99 -675.21 -2.02 -34.55 16 23 C -0.25 -14.76 8.59 84.03 0.72 -14.04 16 24 H 0.08 4.31 6.22 -2.91 -0.02 4.29 16 25 C -0.06 -3.40 4.93 84.86 0.42 -2.98 16 26 N -0.94 -61.36 11.22 21.65 0.24 -61.12 16 27 Si 0.96 49.73 29.58 68.60 2.03 51.76 16 28 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 29 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 30 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 31 H 0.05 1.81 7.45 -2.39 -0.02 1.79 16 32 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.04 1.62 7.62 -2.39 -0.02 1.61 16 34 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 35 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.41 14.03 7.95 -92.71 -0.74 13.30 16 39 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 41 H 0.20 0.45 8.06 -2.91 -0.02 0.42 16 42 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 44 H 0.04 2.57 6.11 -2.39 -0.01 2.56 16 45 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 46 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -93.20 373.82 1.28 -91.92 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.27 Total: 18.92 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 6.41 Total: 27.08 kcal Atomic # 7 Polarization: -152.96 SS G_CDS: -7.37 Total: -160.33 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.06 Total: -29.35 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -93.20 1.28 -91.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071576428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.149 kcal (2) G-P(sol) polarization free energy of solvation -93.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds